Experiment: ICP3_phage_0.41_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_17735 and CSW01_17740 are separated by 68 nucleotides CSW01_17740 and CSW01_17745 are separated by 304 nucleotides CSW01_17745 and CSW01_17750 are separated by 139 nucleotides CSW01_17750 and CSW01_17755 overlap by 8 nucleotides
CSW01_17735: CSW01_17735 - methylglyoxal synthase, at 655,092 to 655,547
_17735
CSW01_17740: CSW01_17740 - nicotinamidase/pyrazinamidase, at 655,616 to 656,236
_17740
CSW01_17745: CSW01_17745 - diacylglycerol kinase, at 656,541 to 656,897
_17745
CSW01_17750: CSW01_17750 - cytochrome B, at 657,037 to 657,354
_17750
CSW01_17755: CSW01_17755 - cytochrome B, at 657,347 to 657,883
_17755
Position (kb) 656
657 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 655.548 kb on + strand at 655.613 kb on + strand at 655.633 kb on + strand at 655.641 kb on - strand at 655.705 kb on + strand, within CSW01_17740 at 655.713 kb on - strand, within CSW01_17740 at 655.713 kb on - strand, within CSW01_17740 at 655.911 kb on - strand, within CSW01_17740 at 655.996 kb on + strand, within CSW01_17740 at 656.030 kb on - strand, within CSW01_17740 at 656.047 kb on + strand, within CSW01_17740 at 656.187 kb on - strand at 656.224 kb on + strand at 656.234 kb on - strand at 656.466 kb on + strand at 656.474 kb on - strand at 656.474 kb on - strand at 656.495 kb on - strand at 656.559 kb on + strand at 656.650 kb on + strand, within CSW01_17745 at 656.710 kb on + strand, within CSW01_17745 at 656.716 kb on - strand, within CSW01_17745 at 656.716 kb on - strand, within CSW01_17745 at 656.716 kb on - strand, within CSW01_17745 at 656.725 kb on + strand, within CSW01_17745 at 656.725 kb on + strand, within CSW01_17745 at 656.799 kb on - strand, within CSW01_17745 at 656.818 kb on - strand, within CSW01_17745 at 656.855 kb on + strand, within CSW01_17745 at 656.860 kb on + strand, within CSW01_17745 at 656.972 kb on - strand at 657.036 kb on + strand at 657.044 kb on - strand at 657.046 kb on + strand at 657.053 kb on + strand at 657.053 kb on + strand at 657.053 kb on + strand at 657.053 kb on + strand at 657.053 kb on + strand at 657.053 kb on + strand at 657.053 kb on + strand at 657.053 kb on + strand at 657.061 kb on - strand at 657.061 kb on - strand at 657.061 kb on - strand at 657.115 kb on + strand, within CSW01_17750 at 657.355 kb on + strand at 657.363 kb on + strand at 657.363 kb on - strand at 657.518 kb on - strand, within CSW01_17755 at 657.532 kb on + strand, within CSW01_17755 at 657.566 kb on + strand, within CSW01_17755 at 657.574 kb on + strand, within CSW01_17755 at 657.582 kb on - strand, within CSW01_17755 at 657.582 kb on - strand, within CSW01_17755 at 657.612 kb on - strand, within CSW01_17755 at 657.614 kb on + strand, within CSW01_17755 at 657.614 kb on + strand, within CSW01_17755 at 657.616 kb on + strand, within CSW01_17755 at 657.714 kb on - strand, within CSW01_17755 at 657.723 kb on + strand, within CSW01_17755 at 657.731 kb on - strand, within CSW01_17755 at 657.731 kb on - strand, within CSW01_17755 at 657.731 kb on - strand, within CSW01_17755 at 657.747 kb on + strand, within CSW01_17755 at 657.752 kb on + strand, within CSW01_17755 at 657.827 kb on - strand, within CSW01_17755 at 657.867 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep2 remove 655,548 + +1.3 655,613 + -0.7 655,633 + +1.4 655,641 - +0.8 655,705 + CSW01_17740 0.14 +1.0 655,713 - CSW01_17740 0.16 +0.7 655,713 - CSW01_17740 0.16 -1.4 655,911 - CSW01_17740 0.48 +0.5 655,996 + CSW01_17740 0.61 -1.1 656,030 - CSW01_17740 0.67 -0.1 656,047 + CSW01_17740 0.69 +0.5 656,187 - -1.3 656,224 + -0.7 656,234 - +0.5 656,466 + +0.7 656,474 - -1.5 656,474 - +0.8 656,495 - -4.1 656,559 + -1.9 656,650 + CSW01_17745 0.31 -1.8 656,710 + CSW01_17745 0.47 -0.1 656,716 - CSW01_17745 0.49 +2.4 656,716 - CSW01_17745 0.49 -2.0 656,716 - CSW01_17745 0.49 -1.3 656,725 + CSW01_17745 0.52 -1.1 656,725 + CSW01_17745 0.52 -3.1 656,799 - CSW01_17745 0.72 -1.4 656,818 - CSW01_17745 0.78 -1.6 656,855 + CSW01_17745 0.88 -0.2 656,860 + CSW01_17745 0.89 -0.8 656,972 - -0.7 657,036 + -1.7 657,044 - +1.3 657,046 + -3.0 657,053 + -1.9 657,053 + -1.4 657,053 + -1.9 657,053 + +0.8 657,053 + -0.6 657,053 + -2.1 657,053 + -0.4 657,053 + +0.5 657,061 - +2.0 657,061 - +1.1 657,061 - +0.4 657,115 + CSW01_17750 0.25 -0.1 657,355 + -0.2 657,363 + +1.5 657,363 - -0.3 657,518 - CSW01_17755 0.32 -1.9 657,532 + CSW01_17755 0.34 +1.8 657,566 + CSW01_17755 0.41 -0.2 657,574 + CSW01_17755 0.42 -1.4 657,582 - CSW01_17755 0.44 +1.7 657,582 - CSW01_17755 0.44 -1.1 657,612 - CSW01_17755 0.49 +0.8 657,614 + CSW01_17755 0.50 -0.5 657,614 + CSW01_17755 0.50 +0.6 657,616 + CSW01_17755 0.50 +1.1 657,714 - CSW01_17755 0.68 -1.5 657,723 + CSW01_17755 0.70 +0.6 657,731 - CSW01_17755 0.72 +0.1 657,731 - CSW01_17755 0.72 -0.6 657,731 - CSW01_17755 0.72 -0.2 657,747 + CSW01_17755 0.74 +0.2 657,752 + CSW01_17755 0.75 -3.1 657,827 - CSW01_17755 0.89 +0.9 657,867 + +1.0
Or see this region's nucleotide sequence