Experiment: ICP3_phage_0.41_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_16985 and CSW01_16990 are separated by 88 nucleotides CSW01_16990 and CSW01_16995 are separated by 150 nucleotides
CSW01_16985: CSW01_16985 - 9-hexadecenoic acid cis-trans isomerase, at 486,352 to 488,652
_16985
CSW01_16990: CSW01_16990 - hypothetical protein, at 488,741 to 488,914
_16990
CSW01_16995: CSW01_16995 - MFS transporter, at 489,065 to 490,297
_16995
Position (kb) 488
489 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 487.917 kb on - strand, within CSW01_16985 at 487.917 kb on - strand, within CSW01_16985 at 487.938 kb on - strand, within CSW01_16985 at 487.945 kb on + strand, within CSW01_16985 at 487.953 kb on - strand, within CSW01_16985 at 488.092 kb on + strand, within CSW01_16985 at 488.097 kb on + strand, within CSW01_16985 at 488.097 kb on + strand, within CSW01_16985 at 488.102 kb on + strand, within CSW01_16985 at 488.148 kb on + strand, within CSW01_16985 at 488.373 kb on - strand, within CSW01_16985 at 488.426 kb on - strand at 488.434 kb on + strand at 488.581 kb on + strand at 488.581 kb on - strand at 488.605 kb on + strand at 488.613 kb on - strand at 488.615 kb on + strand at 488.623 kb on - strand at 488.628 kb on + strand at 488.635 kb on + strand at 488.635 kb on + strand at 488.643 kb on - strand at 488.817 kb on + strand, within CSW01_16990 at 488.909 kb on + strand at 488.950 kb on - strand at 489.080 kb on - strand at 489.107 kb on - strand at 489.135 kb on - strand at 489.200 kb on + strand, within CSW01_16995 at 489.200 kb on + strand, within CSW01_16995 at 489.203 kb on - strand, within CSW01_16995 at 489.517 kb on + strand, within CSW01_16995 at 489.523 kb on - strand, within CSW01_16995 at 489.609 kb on - strand, within CSW01_16995 at 489.613 kb on + strand, within CSW01_16995 at 489.621 kb on + strand, within CSW01_16995 at 489.621 kb on + strand, within CSW01_16995 at 489.634 kb on - strand, within CSW01_16995 at 489.634 kb on - strand, within CSW01_16995 at 489.756 kb on - strand, within CSW01_16995 at 489.845 kb on - strand, within CSW01_16995 at 489.877 kb on - strand, within CSW01_16995
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep2 remove 487,917 - CSW01_16985 0.68 +0.9 487,917 - CSW01_16985 0.68 -2.2 487,938 - CSW01_16985 0.69 -0.1 487,945 + CSW01_16985 0.69 +0.3 487,953 - CSW01_16985 0.70 -2.2 488,092 + CSW01_16985 0.76 -2.8 488,097 + CSW01_16985 0.76 -0.6 488,097 + CSW01_16985 0.76 +0.3 488,102 + CSW01_16985 0.76 -0.2 488,148 + CSW01_16985 0.78 -0.8 488,373 - CSW01_16985 0.88 -3.5 488,426 - -1.6 488,434 + +1.6 488,581 + +0.3 488,581 - +0.7 488,605 + -1.2 488,613 - -0.3 488,615 + +0.3 488,623 - -1.3 488,628 + -0.8 488,635 + +0.2 488,635 + +0.7 488,643 - +0.1 488,817 + CSW01_16990 0.44 -1.1 488,909 + +0.3 488,950 - -0.8 489,080 - +0.4 489,107 - -1.6 489,135 - +0.7 489,200 + CSW01_16995 0.11 +0.2 489,200 + CSW01_16995 0.11 +0.7 489,203 - CSW01_16995 0.11 -0.6 489,517 + CSW01_16995 0.37 -0.3 489,523 - CSW01_16995 0.37 -0.8 489,609 - CSW01_16995 0.44 -0.1 489,613 + CSW01_16995 0.44 -2.6 489,621 + CSW01_16995 0.45 +1.0 489,621 + CSW01_16995 0.45 -1.7 489,634 - CSW01_16995 0.46 +0.8 489,634 - CSW01_16995 0.46 +1.5 489,756 - CSW01_16995 0.56 -1.1 489,845 - CSW01_16995 0.63 +0.5 489,877 - CSW01_16995 0.66 +0.0
Or see this region's nucleotide sequence