Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_16445

Experiment: ICP3_phage_0.41_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_16430 and CSW01_16435 are separated by 1 nucleotidesCSW01_16435 and CSW01_16440 are separated by 79 nucleotidesCSW01_16440 and CSW01_16445 are separated by 99 nucleotidesCSW01_16445 and CSW01_16450 are separated by 382 nucleotides CSW01_16430: CSW01_16430 - hypothetical protein, at 401,348 to 401,848 _16430 CSW01_16435: CSW01_16435 - DUF3265 domain-containing protein, at 401,850 to 401,924 _16435 CSW01_16440: CSW01_16440 - hypothetical protein, at 402,004 to 402,401 _16440 CSW01_16445: CSW01_16445 - hypothetical protein, at 402,501 to 402,965 _16445 CSW01_16450: CSW01_16450 - sulfate transporter subunit, at 403,348 to 404,333 _16450 Position (kb) 402 403Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 401.507 kb on + strand, within CSW01_16430at 401.552 kb on + strand, within CSW01_16430at 401.574 kb on + strand, within CSW01_16430at 401.574 kb on + strand, within CSW01_16430at 401.580 kb on + strand, within CSW01_16430at 401.582 kb on + strand, within CSW01_16430at 401.590 kb on - strand, within CSW01_16430at 401.673 kb on + strand, within CSW01_16430at 401.681 kb on - strand, within CSW01_16430at 401.681 kb on - strand, within CSW01_16430at 401.681 kb on - strand, within CSW01_16430at 401.708 kb on - strand, within CSW01_16430at 401.796 kb on - strand, within CSW01_16430at 401.841 kb on + strandat 401.913 kb on - strand, within CSW01_16435at 401.933 kb on + strandat 401.956 kb on + strandat 401.956 kb on + strandat 401.966 kb on + strandat 401.966 kb on + strandat 401.966 kb on + strandat 401.966 kb on + strandat 401.966 kb on + strandat 401.966 kb on + strandat 401.966 kb on + strandat 402.063 kb on + strand, within CSW01_16440at 402.087 kb on - strand, within CSW01_16440at 402.087 kb on - strand, within CSW01_16440at 402.115 kb on + strand, within CSW01_16440at 402.146 kb on + strand, within CSW01_16440at 402.286 kb on + strand, within CSW01_16440at 402.286 kb on + strand, within CSW01_16440at 402.286 kb on + strand, within CSW01_16440at 402.286 kb on + strand, within CSW01_16440at 402.286 kb on + strand, within CSW01_16440at 402.286 kb on + strand, within CSW01_16440at 402.286 kb on + strand, within CSW01_16440at 402.287 kb on + strand, within CSW01_16440at 402.294 kb on - strand, within CSW01_16440at 402.294 kb on - strand, within CSW01_16440at 402.294 kb on - strand, within CSW01_16440at 402.294 kb on - strand, within CSW01_16440at 402.294 kb on - strand, within CSW01_16440at 402.294 kb on - strand, within CSW01_16440at 402.294 kb on - strand, within CSW01_16440at 402.294 kb on - strand, within CSW01_16440at 402.294 kb on - strand, within CSW01_16440at 402.317 kb on - strand, within CSW01_16440at 402.317 kb on - strand, within CSW01_16440at 402.317 kb on - strand, within CSW01_16440at 402.327 kb on - strand, within CSW01_16440at 402.375 kb on - strandat 402.437 kb on + strandat 402.450 kb on - strandat 402.452 kb on + strandat 402.460 kb on - strandat 402.460 kb on - strandat 402.460 kb on - strandat 402.460 kb on - strandat 402.467 kb on - strandat 402.597 kb on + strand, within CSW01_16445at 402.597 kb on + strand, within CSW01_16445at 402.605 kb on - strand, within CSW01_16445at 402.605 kb on - strand, within CSW01_16445at 402.605 kb on - strand, within CSW01_16445at 402.641 kb on + strand, within CSW01_16445at 402.642 kb on + strand, within CSW01_16445at 402.645 kb on - strand, within CSW01_16445at 402.652 kb on + strand, within CSW01_16445at 402.652 kb on + strand, within CSW01_16445at 402.652 kb on + strand, within CSW01_16445at 402.652 kb on + strand, within CSW01_16445at 402.655 kb on - strand, within CSW01_16445at 402.660 kb on - strand, within CSW01_16445at 402.660 kb on - strand, within CSW01_16445at 402.660 kb on - strand, within CSW01_16445at 402.660 kb on - strand, within CSW01_16445at 402.660 kb on - strand, within CSW01_16445at 402.660 kb on - strand, within CSW01_16445at 402.660 kb on - strand, within CSW01_16445at 402.660 kb on - strand, within CSW01_16445at 402.749 kb on + strand, within CSW01_16445at 402.749 kb on + strand, within CSW01_16445at 402.757 kb on - strand, within CSW01_16445at 402.757 kb on - strand, within CSW01_16445at 402.762 kb on - strand, within CSW01_16445at 402.767 kb on + strand, within CSW01_16445at 402.801 kb on + strand, within CSW01_16445at 402.821 kb on - strand, within CSW01_16445at 402.902 kb on + strand, within CSW01_16445at 402.991 kb on + strandat 403.033 kb on - strandat 403.045 kb on - strandat 403.108 kb on - strandat 403.109 kb on - strandat 403.126 kb on + strandat 403.150 kb on + strandat 403.170 kb on - strandat 403.214 kb on + strandat 403.222 kb on - strandat 403.243 kb on - strandat 403.259 kb on + strandat 403.314 kb on + strandat 403.322 kb on - strandat 403.351 kb on + strandat 403.403 kb on + strandat 403.403 kb on + strandat 403.403 kb on + strandat 403.410 kb on - strandat 403.410 kb on - strandat 403.410 kb on - strandat 403.410 kb on - strandat 403.458 kb on + strand, within CSW01_16450at 403.519 kb on + strand, within CSW01_16450at 403.558 kb on - strand, within CSW01_16450at 403.564 kb on - strand, within CSW01_16450at 403.708 kb on + strand, within CSW01_16450at 403.708 kb on + strand, within CSW01_16450at 403.708 kb on + strand, within CSW01_16450at 403.716 kb on - strand, within CSW01_16450at 403.716 kb on - strand, within CSW01_16450at 403.716 kb on - strand, within CSW01_16450at 403.716 kb on - strand, within CSW01_16450at 403.726 kb on - strand, within CSW01_16450at 403.761 kb on + strand, within CSW01_16450at 403.761 kb on - strand, within CSW01_16450at 403.762 kb on - strand, within CSW01_16450at 403.768 kb on + strand, within CSW01_16450at 403.776 kb on - strand, within CSW01_16450at 403.821 kb on - strand, within CSW01_16450at 403.852 kb on + strand, within CSW01_16450at 403.852 kb on + strand, within CSW01_16450at 403.852 kb on + strand, within CSW01_16450at 403.852 kb on + strand, within CSW01_16450at 403.852 kb on + strand, within CSW01_16450at 403.852 kb on + strand, within CSW01_16450at 403.852 kb on + strand, within CSW01_16450at 403.852 kb on + strand, within CSW01_16450at 403.852 kb on + strand, within CSW01_16450at 403.852 kb on + strand, within CSW01_16450at 403.852 kb on + strand, within CSW01_16450at 403.852 kb on + strand, within CSW01_16450at 403.852 kb on + strand, within CSW01_16450at 403.852 kb on + strand, within CSW01_16450at 403.852 kb on + strand, within CSW01_16450at 403.852 kb on + strand, within CSW01_16450at 403.852 kb on + strand, within CSW01_16450at 403.852 kb on + strand, within CSW01_16450at 403.852 kb on + strand, within CSW01_16450at 403.852 kb on + strand, within CSW01_16450at 403.860 kb on - strand, within CSW01_16450at 403.860 kb on - strand, within CSW01_16450at 403.860 kb on - strand, within CSW01_16450at 403.860 kb on - strand, within CSW01_16450at 403.860 kb on - strand, within CSW01_16450at 403.860 kb on - strand, within CSW01_16450at 403.860 kb on - strand, within CSW01_16450at 403.860 kb on - strand, within CSW01_16450at 403.860 kb on - strand, within CSW01_16450at 403.860 kb on - strand, within CSW01_16450at 403.860 kb on - strand, within CSW01_16450at 403.860 kb on - strand, within CSW01_16450at 403.860 kb on - strand, within CSW01_16450at 403.860 kb on - strand, within CSW01_16450at 403.860 kb on - strand, within CSW01_16450at 403.860 kb on - strand, within CSW01_16450at 403.860 kb on - strand, within CSW01_16450at 403.860 kb on - strand, within CSW01_16450at 403.860 kb on - strand, within CSW01_16450at 403.860 kb on - strand, within CSW01_16450at 403.860 kb on - strand, within CSW01_16450at 403.860 kb on - strand, within CSW01_16450at 403.860 kb on - strand, within CSW01_16450at 403.860 kb on - strand, within CSW01_16450at 403.860 kb on - strand, within CSW01_16450at 403.860 kb on - strand, within CSW01_16450at 403.892 kb on - strand, within CSW01_16450at 403.899 kb on + strand, within CSW01_16450at 403.907 kb on - strand, within CSW01_16450at 403.930 kb on + strand, within CSW01_16450at 403.930 kb on + strand, within CSW01_16450at 403.938 kb on - strand, within CSW01_16450

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep2
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401,507 + CSW01_16430 0.32 +1.1
401,552 + CSW01_16430 0.41 +0.1
401,574 + CSW01_16430 0.45 +0.7
401,574 + CSW01_16430 0.45 +0.0
401,580 + CSW01_16430 0.46 +1.3
401,582 + CSW01_16430 0.47 +0.2
401,590 - CSW01_16430 0.48 -2.5
401,673 + CSW01_16430 0.65 -0.0
401,681 - CSW01_16430 0.66 -2.6
401,681 - CSW01_16430 0.66 -2.7
401,681 - CSW01_16430 0.66 -2.4
401,708 - CSW01_16430 0.72 -0.7
401,796 - CSW01_16430 0.89 +0.2
401,841 + -1.8
401,913 - CSW01_16435 0.84 +0.7
401,933 + -1.4
401,956 + +0.2
401,956 + -2.6
401,966 + +0.4
401,966 + +0.5
401,966 + -1.2
401,966 + +0.6
401,966 + +2.0
401,966 + +1.4
401,966 + +1.4
402,063 + CSW01_16440 0.15 -1.4
402,087 - CSW01_16440 0.21 -0.9
402,087 - CSW01_16440 0.21 -0.2
402,115 + CSW01_16440 0.28 +0.5
402,146 + CSW01_16440 0.36 -2.6
402,286 + CSW01_16440 0.71 +1.7
402,286 + CSW01_16440 0.71 -0.1
402,286 + CSW01_16440 0.71 -1.0
402,286 + CSW01_16440 0.71 +0.5
402,286 + CSW01_16440 0.71 +0.3
402,286 + CSW01_16440 0.71 -0.9
402,286 + CSW01_16440 0.71 +0.4
402,287 + CSW01_16440 0.71 -1.4
402,294 - CSW01_16440 0.73 +0.1
402,294 - CSW01_16440 0.73 -0.0
402,294 - CSW01_16440 0.73 -0.1
402,294 - CSW01_16440 0.73 -0.3
402,294 - CSW01_16440 0.73 -0.8
402,294 - CSW01_16440 0.73 -0.5
402,294 - CSW01_16440 0.73 -1.0
402,294 - CSW01_16440 0.73 -0.1
402,294 - CSW01_16440 0.73 -1.2
402,317 - CSW01_16440 0.79 +0.5
402,317 - CSW01_16440 0.79 +1.3
402,317 - CSW01_16440 0.79 -0.1
402,327 - CSW01_16440 0.81 +0.6
402,375 - -2.5
402,437 + -0.0
402,450 - +0.7
402,452 + -0.2
402,460 - +0.8
402,460 - -0.0
402,460 - +0.3
402,460 - +0.1
402,467 - +0.9
402,597 + CSW01_16445 0.21 +0.9
402,597 + CSW01_16445 0.21 +0.2
402,605 - CSW01_16445 0.22 -0.6
402,605 - CSW01_16445 0.22 +0.2
402,605 - CSW01_16445 0.22 -3.4
402,641 + CSW01_16445 0.30 -0.6
402,642 + CSW01_16445 0.30 +0.9
402,645 - CSW01_16445 0.31 +0.1
402,652 + CSW01_16445 0.32 -0.9
402,652 + CSW01_16445 0.32 -0.7
402,652 + CSW01_16445 0.32 -0.4
402,652 + CSW01_16445 0.32 -1.7
402,655 - CSW01_16445 0.33 -0.8
402,660 - CSW01_16445 0.34 -0.3
402,660 - CSW01_16445 0.34 -0.3
402,660 - CSW01_16445 0.34 +0.4
402,660 - CSW01_16445 0.34 -2.3
402,660 - CSW01_16445 0.34 +0.0
402,660 - CSW01_16445 0.34 -0.9
402,660 - CSW01_16445 0.34 -0.9
402,660 - CSW01_16445 0.34 +0.5
402,749 + CSW01_16445 0.53 -0.7
402,749 + CSW01_16445 0.53 -0.8
402,757 - CSW01_16445 0.55 -2.3
402,757 - CSW01_16445 0.55 -0.4
402,762 - CSW01_16445 0.56 -1.9
402,767 + CSW01_16445 0.57 -1.0
402,801 + CSW01_16445 0.65 -0.1
402,821 - CSW01_16445 0.69 -0.8
402,902 + CSW01_16445 0.86 -0.4
402,991 + -1.1
403,033 - -0.2
403,045 - -1.1
403,108 - -0.2
403,109 - -2.4
403,126 + -1.8
403,150 + +2.3
403,170 - -0.8
403,214 + -3.7
403,222 - -1.2
403,243 - +0.5
403,259 + -0.2
403,314 + +1.0
403,322 - -1.8
403,351 + -0.9
403,403 + -1.1
403,403 + +0.3
403,403 + +0.4
403,410 - +1.1
403,410 - +1.0
403,410 - +0.0
403,410 - +0.2
403,458 + CSW01_16450 0.11 -3.7
403,519 + CSW01_16450 0.17 -0.3
403,558 - CSW01_16450 0.21 +0.7
403,564 - CSW01_16450 0.22 -2.8
403,708 + CSW01_16450 0.37 -1.4
403,708 + CSW01_16450 0.37 -3.5
403,708 + CSW01_16450 0.37 -1.8
403,716 - CSW01_16450 0.37 -2.1
403,716 - CSW01_16450 0.37 +0.6
403,716 - CSW01_16450 0.37 -3.3
403,716 - CSW01_16450 0.37 -1.1
403,726 - CSW01_16450 0.38 -3.3
403,761 + CSW01_16450 0.42 -0.4
403,761 - CSW01_16450 0.42 -1.4
403,762 - CSW01_16450 0.42 +2.2
403,768 + CSW01_16450 0.43 -1.8
403,776 - CSW01_16450 0.43 -3.2
403,821 - CSW01_16450 0.48 -0.2
403,852 + CSW01_16450 0.51 -1.8
403,852 + CSW01_16450 0.51 +0.9
403,852 + CSW01_16450 0.51 -0.8
403,852 + CSW01_16450 0.51 -0.5
403,852 + CSW01_16450 0.51 -0.9
403,852 + CSW01_16450 0.51 -1.8
403,852 + CSW01_16450 0.51 -0.5
403,852 + CSW01_16450 0.51 -0.6
403,852 + CSW01_16450 0.51 -0.6
403,852 + CSW01_16450 0.51 -0.3
403,852 + CSW01_16450 0.51 +1.0
403,852 + CSW01_16450 0.51 -0.0
403,852 + CSW01_16450 0.51 -0.8
403,852 + CSW01_16450 0.51 -3.0
403,852 + CSW01_16450 0.51 -1.4
403,852 + CSW01_16450 0.51 -0.5
403,852 + CSW01_16450 0.51 -2.3
403,852 + CSW01_16450 0.51 -1.7
403,852 + CSW01_16450 0.51 -1.7
403,852 + CSW01_16450 0.51 +1.4
403,860 - CSW01_16450 0.52 -1.2
403,860 - CSW01_16450 0.52 -0.2
403,860 - CSW01_16450 0.52 +1.0
403,860 - CSW01_16450 0.52 +0.6
403,860 - CSW01_16450 0.52 -0.3
403,860 - CSW01_16450 0.52 +2.1
403,860 - CSW01_16450 0.52 -1.6
403,860 - CSW01_16450 0.52 +0.6
403,860 - CSW01_16450 0.52 -0.2
403,860 - CSW01_16450 0.52 +1.5
403,860 - CSW01_16450 0.52 +0.4
403,860 - CSW01_16450 0.52 +1.5
403,860 - CSW01_16450 0.52 +0.8
403,860 - CSW01_16450 0.52 +2.2
403,860 - CSW01_16450 0.52 -0.7
403,860 - CSW01_16450 0.52 +0.3
403,860 - CSW01_16450 0.52 -2.7
403,860 - CSW01_16450 0.52 -0.7
403,860 - CSW01_16450 0.52 -1.2
403,860 - CSW01_16450 0.52 -1.0
403,860 - CSW01_16450 0.52 +0.5
403,860 - CSW01_16450 0.52 -1.4
403,860 - CSW01_16450 0.52 -0.6
403,860 - CSW01_16450 0.52 +0.3
403,860 - CSW01_16450 0.52 -0.1
403,860 - CSW01_16450 0.52 -0.9
403,892 - CSW01_16450 0.55 -2.1
403,899 + CSW01_16450 0.56 +0.3
403,907 - CSW01_16450 0.57 +0.6
403,930 + CSW01_16450 0.59 -1.3
403,930 + CSW01_16450 0.59 +2.0
403,938 - CSW01_16450 0.60 -3.9

Or see this region's nucleotide sequence