Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_16240

Experiment: ICP3_phage_0.41_MOI_rep2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_16225 and CSW01_16230 are separated by 304 nucleotidesCSW01_16230 and CSW01_16235 are separated by 41 nucleotidesCSW01_16235 and CSW01_16240 overlap by 19 nucleotidesCSW01_16240 and CSW01_16245 are separated by 149 nucleotidesCSW01_16245 and CSW01_16250 are separated by 81 nucleotidesCSW01_16250 and CSW01_16255 are separated by 35 nucleotides CSW01_16225: CSW01_16225 - hypothetical protein, at 382,788 to 383,105 _16225 CSW01_16230: CSW01_16230 - DUF645 domain-containing protein, at 383,410 to 383,592 _16230 CSW01_16235: CSW01_16235 - hypothetical protein, at 383,634 to 383,729 _16235 CSW01_16240: CSW01_16240 - hypothetical protein, at 383,711 to 384,496 _16240 CSW01_16245: CSW01_16245 - hypothetical protein, at 384,646 to 384,960 _16245 CSW01_16250: CSW01_16250 - C4-dicarboxylate ABC transporter, at 385,042 to 385,170 _16250 CSW01_16255: CSW01_16255 - hypothetical protein, at 385,206 to 385,631 _16255 Position (kb) 383 384 385Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 382.793 kb on - strandat 382.928 kb on + strand, within CSW01_16225at 383.465 kb on - strand, within CSW01_16230at 383.492 kb on + strand, within CSW01_16230at 383.500 kb on - strand, within CSW01_16230at 383.506 kb on + strand, within CSW01_16230at 383.551 kb on - strand, within CSW01_16230at 383.837 kb on - strand, within CSW01_16240at 383.859 kb on - strand, within CSW01_16240at 383.859 kb on - strand, within CSW01_16240at 383.859 kb on - strand, within CSW01_16240at 383.867 kb on + strand, within CSW01_16240at 383.968 kb on - strand, within CSW01_16240at 384.010 kb on + strand, within CSW01_16240at 384.018 kb on - strand, within CSW01_16240at 384.018 kb on - strand, within CSW01_16240at 384.327 kb on + strand, within CSW01_16240at 384.335 kb on - strand, within CSW01_16240at 384.379 kb on + strand, within CSW01_16240at 384.399 kb on - strand, within CSW01_16240at 384.407 kb on + strand, within CSW01_16240at 384.411 kb on + strand, within CSW01_16240at 384.424 kb on - strandat 384.458 kb on - strandat 384.739 kb on - strand, within CSW01_16245at 384.739 kb on - strand, within CSW01_16245at 384.739 kb on - strand, within CSW01_16245at 384.739 kb on - strand, within CSW01_16245at 384.778 kb on + strand, within CSW01_16245at 384.788 kb on + strand, within CSW01_16245at 384.788 kb on + strand, within CSW01_16245at 384.867 kb on + strand, within CSW01_16245at 385.112 kb on + strand, within CSW01_16250at 385.112 kb on + strand, within CSW01_16250at 385.136 kb on - strand, within CSW01_16250at 385.283 kb on + strand, within CSW01_16255at 385.306 kb on - strand, within CSW01_16255at 385.336 kb on + strand, within CSW01_16255at 385.344 kb on - strand, within CSW01_16255at 385.351 kb on + strand, within CSW01_16255at 385.351 kb on + strand, within CSW01_16255at 385.360 kb on - strand, within CSW01_16255at 385.397 kb on - strand, within CSW01_16255

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep2
remove
382,793 - -3.4
382,928 + CSW01_16225 0.44 -0.6
383,465 - CSW01_16230 0.30 -0.5
383,492 + CSW01_16230 0.45 -1.4
383,500 - CSW01_16230 0.49 -0.0
383,506 + CSW01_16230 0.52 -1.7
383,551 - CSW01_16230 0.77 +1.3
383,837 - CSW01_16240 0.16 -2.2
383,859 - CSW01_16240 0.19 -0.6
383,859 - CSW01_16240 0.19 -2.3
383,859 - CSW01_16240 0.19 +0.2
383,867 + CSW01_16240 0.20 -1.7
383,968 - CSW01_16240 0.33 -0.9
384,010 + CSW01_16240 0.38 +2.0
384,018 - CSW01_16240 0.39 -0.2
384,018 - CSW01_16240 0.39 -1.7
384,327 + CSW01_16240 0.78 +0.1
384,335 - CSW01_16240 0.79 +1.2
384,379 + CSW01_16240 0.85 +2.0
384,399 - CSW01_16240 0.88 +0.2
384,407 + CSW01_16240 0.89 +0.7
384,411 + CSW01_16240 0.89 +1.3
384,424 - -0.3
384,458 - -0.2
384,739 - CSW01_16245 0.30 -0.2
384,739 - CSW01_16245 0.30 -1.8
384,739 - CSW01_16245 0.30 +1.3
384,739 - CSW01_16245 0.30 +1.3
384,778 + CSW01_16245 0.42 -0.5
384,788 + CSW01_16245 0.45 +1.0
384,788 + CSW01_16245 0.45 +0.9
384,867 + CSW01_16245 0.70 +0.8
385,112 + CSW01_16250 0.54 -1.0
385,112 + CSW01_16250 0.54 +0.4
385,136 - CSW01_16250 0.73 +0.8
385,283 + CSW01_16255 0.18 +0.2
385,306 - CSW01_16255 0.23 -2.3
385,336 + CSW01_16255 0.31 -1.6
385,344 - CSW01_16255 0.32 +1.1
385,351 + CSW01_16255 0.34 -0.1
385,351 + CSW01_16255 0.34 +1.4
385,360 - CSW01_16255 0.36 -1.5
385,397 - CSW01_16255 0.45 -0.4

Or see this region's nucleotide sequence