Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_15245

Experiment: ICP3_phage_0.41_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_15235 and CSW01_15240 overlap by 4 nucleotidesCSW01_15240 and CSW01_15245 overlap by 25 nucleotidesCSW01_15245 and CSW01_15250 are separated by 102 nucleotidesCSW01_15250 and CSW01_15255 are separated by 194 nucleotides CSW01_15235: CSW01_15235 - DUF2861 domain-containing protein, at 275,066 to 275,896 _15235 CSW01_15240: CSW01_15240 - DNA-binding response regulator, at 275,893 to 276,564 _15240 CSW01_15245: CSW01_15245 - histidine kinase, at 276,540 to 277,994 _15245 CSW01_15250: CSW01_15250 - cupin domain-containing protein, at 278,097 to 278,609 _15250 CSW01_15255: CSW01_15255 - copper-binding protein, at 278,804 to 279,313 _15255 Position (kb) 276 277 278Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 275.577 kb on + strand, within CSW01_15235at 275.618 kb on + strand, within CSW01_15235at 275.704 kb on + strand, within CSW01_15235at 275.714 kb on - strand, within CSW01_15235at 275.714 kb on - strand, within CSW01_15235at 275.906 kb on + strandat 275.993 kb on - strand, within CSW01_15240at 276.029 kb on + strand, within CSW01_15240at 276.037 kb on - strand, within CSW01_15240at 276.098 kb on - strand, within CSW01_15240at 276.120 kb on + strand, within CSW01_15240at 276.130 kb on + strand, within CSW01_15240at 276.143 kb on - strand, within CSW01_15240at 276.183 kb on + strand, within CSW01_15240at 276.244 kb on + strand, within CSW01_15240at 276.280 kb on - strand, within CSW01_15240at 276.335 kb on + strand, within CSW01_15240at 276.343 kb on - strand, within CSW01_15240at 276.371 kb on - strand, within CSW01_15240at 276.447 kb on + strand, within CSW01_15240at 276.455 kb on - strand, within CSW01_15240at 276.495 kb on + strand, within CSW01_15240at 276.495 kb on + strand, within CSW01_15240at 276.495 kb on + strand, within CSW01_15240at 276.495 kb on + strand, within CSW01_15240at 276.505 kb on - strandat 276.574 kb on - strandat 276.580 kb on + strandat 276.627 kb on + strandat 276.627 kb on + strandat 276.662 kb on - strandat 276.672 kb on + strandat 276.711 kb on - strand, within CSW01_15245at 276.732 kb on + strand, within CSW01_15245at 276.748 kb on - strand, within CSW01_15245at 276.758 kb on + strand, within CSW01_15245at 276.771 kb on - strand, within CSW01_15245at 276.836 kb on + strand, within CSW01_15245at 276.836 kb on + strand, within CSW01_15245at 276.836 kb on + strand, within CSW01_15245at 276.844 kb on - strand, within CSW01_15245at 276.844 kb on - strand, within CSW01_15245at 276.844 kb on - strand, within CSW01_15245at 276.844 kb on - strand, within CSW01_15245at 276.844 kb on - strand, within CSW01_15245at 276.863 kb on + strand, within CSW01_15245at 276.880 kb on + strand, within CSW01_15245at 276.886 kb on + strand, within CSW01_15245at 276.940 kb on + strand, within CSW01_15245at 276.957 kb on + strand, within CSW01_15245at 277.046 kb on - strand, within CSW01_15245at 277.049 kb on - strand, within CSW01_15245at 277.049 kb on - strand, within CSW01_15245at 277.105 kb on - strand, within CSW01_15245at 277.105 kb on - strand, within CSW01_15245at 277.122 kb on - strand, within CSW01_15245at 277.124 kb on + strand, within CSW01_15245at 277.124 kb on + strand, within CSW01_15245at 277.124 kb on + strand, within CSW01_15245at 277.132 kb on - strand, within CSW01_15245at 277.132 kb on - strand, within CSW01_15245at 277.132 kb on - strand, within CSW01_15245at 277.166 kb on + strand, within CSW01_15245at 277.166 kb on + strand, within CSW01_15245at 277.166 kb on + strand, within CSW01_15245at 277.174 kb on - strand, within CSW01_15245at 277.174 kb on - strand, within CSW01_15245at 277.189 kb on - strand, within CSW01_15245at 277.199 kb on - strand, within CSW01_15245at 277.234 kb on + strand, within CSW01_15245at 277.234 kb on + strand, within CSW01_15245at 277.234 kb on + strand, within CSW01_15245at 277.242 kb on - strand, within CSW01_15245at 277.242 kb on - strand, within CSW01_15245at 277.242 kb on - strand, within CSW01_15245at 277.376 kb on + strand, within CSW01_15245at 277.441 kb on - strand, within CSW01_15245at 277.541 kb on + strand, within CSW01_15245at 277.556 kb on + strand, within CSW01_15245at 277.572 kb on + strand, within CSW01_15245at 277.574 kb on + strand, within CSW01_15245at 277.580 kb on - strand, within CSW01_15245at 277.580 kb on - strand, within CSW01_15245at 277.580 kb on - strand, within CSW01_15245at 277.580 kb on - strand, within CSW01_15245at 277.580 kb on - strand, within CSW01_15245at 277.619 kb on + strand, within CSW01_15245at 277.637 kb on + strand, within CSW01_15245at 277.637 kb on + strand, within CSW01_15245at 277.642 kb on + strand, within CSW01_15245at 277.738 kb on - strand, within CSW01_15245at 277.801 kb on + strand, within CSW01_15245at 277.801 kb on + strand, within CSW01_15245at 277.809 kb on - strand, within CSW01_15245at 277.809 kb on - strand, within CSW01_15245at 277.903 kb on + strandat 277.913 kb on + strandat 277.913 kb on + strandat 277.913 kb on + strandat 277.913 kb on + strandat 277.913 kb on + strandat 277.913 kb on + strandat 277.918 kb on + strandat 277.918 kb on + strandat 277.918 kb on + strandat 277.921 kb on - strandat 277.921 kb on - strandat 277.928 kb on + strandat 277.937 kb on - strandat 277.947 kb on - strandat 277.961 kb on + strandat 277.969 kb on - strandat 277.969 kb on - strandat 278.125 kb on - strandat 278.125 kb on - strandat 278.143 kb on + strandat 278.168 kb on + strand, within CSW01_15250at 278.178 kb on + strand, within CSW01_15250at 278.242 kb on + strand, within CSW01_15250at 278.243 kb on - strand, within CSW01_15250at 278.298 kb on + strand, within CSW01_15250at 278.311 kb on - strand, within CSW01_15250at 278.348 kb on + strand, within CSW01_15250at 278.353 kb on - strand, within CSW01_15250at 278.353 kb on - strand, within CSW01_15250at 278.384 kb on - strand, within CSW01_15250at 278.894 kb on + strand, within CSW01_15255at 278.925 kb on - strand, within CSW01_15255at 278.925 kb on - strand, within CSW01_15255at 278.925 kb on - strand, within CSW01_15255at 278.942 kb on + strand, within CSW01_15255

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep2
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275,577 + CSW01_15235 0.61 -1.4
275,618 + CSW01_15235 0.66 -1.2
275,704 + CSW01_15235 0.77 -1.6
275,714 - CSW01_15235 0.78 -0.6
275,714 - CSW01_15235 0.78 -0.6
275,906 + -0.6
275,993 - CSW01_15240 0.15 +0.9
276,029 + CSW01_15240 0.20 -0.3
276,037 - CSW01_15240 0.21 -0.5
276,098 - CSW01_15240 0.31 +1.3
276,120 + CSW01_15240 0.34 -0.2
276,130 + CSW01_15240 0.35 +1.6
276,143 - CSW01_15240 0.37 +0.2
276,183 + CSW01_15240 0.43 -0.1
276,244 + CSW01_15240 0.52 -2.3
276,280 - CSW01_15240 0.58 +0.4
276,335 + CSW01_15240 0.66 -2.3
276,343 - CSW01_15240 0.67 -1.9
276,371 - CSW01_15240 0.71 +1.5
276,447 + CSW01_15240 0.82 +0.9
276,455 - CSW01_15240 0.84 -0.5
276,495 + CSW01_15240 0.90 -0.8
276,495 + CSW01_15240 0.90 -1.2
276,495 + CSW01_15240 0.90 +0.8
276,495 + CSW01_15240 0.90 -2.7
276,505 - -2.3
276,574 - +1.1
276,580 + -0.8
276,627 + -2.0
276,627 + -0.4
276,662 - +1.6
276,672 + +0.4
276,711 - CSW01_15245 0.12 +0.5
276,732 + CSW01_15245 0.13 +1.3
276,748 - CSW01_15245 0.14 -0.2
276,758 + CSW01_15245 0.15 -0.8
276,771 - CSW01_15245 0.16 +0.4
276,836 + CSW01_15245 0.20 -2.8
276,836 + CSW01_15245 0.20 +0.8
276,836 + CSW01_15245 0.20 -0.8
276,844 - CSW01_15245 0.21 -0.2
276,844 - CSW01_15245 0.21 +0.1
276,844 - CSW01_15245 0.21 -3.0
276,844 - CSW01_15245 0.21 -1.6
276,844 - CSW01_15245 0.21 -0.3
276,863 + CSW01_15245 0.22 +1.6
276,880 + CSW01_15245 0.23 +1.1
276,886 + CSW01_15245 0.24 +2.7
276,940 + CSW01_15245 0.27 +2.0
276,957 + CSW01_15245 0.29 -3.3
277,046 - CSW01_15245 0.35 -0.3
277,049 - CSW01_15245 0.35 -0.8
277,049 - CSW01_15245 0.35 +0.7
277,105 - CSW01_15245 0.39 -0.3
277,105 - CSW01_15245 0.39 +0.0
277,122 - CSW01_15245 0.40 +0.1
277,124 + CSW01_15245 0.40 +0.6
277,124 + CSW01_15245 0.40 -0.8
277,124 + CSW01_15245 0.40 -0.2
277,132 - CSW01_15245 0.41 -2.3
277,132 - CSW01_15245 0.41 -0.2
277,132 - CSW01_15245 0.41 +1.0
277,166 + CSW01_15245 0.43 -0.5
277,166 + CSW01_15245 0.43 +0.6
277,166 + CSW01_15245 0.43 -1.7
277,174 - CSW01_15245 0.44 -1.6
277,174 - CSW01_15245 0.44 -0.2
277,189 - CSW01_15245 0.45 -0.3
277,199 - CSW01_15245 0.45 +1.2
277,234 + CSW01_15245 0.48 +0.2
277,234 + CSW01_15245 0.48 -0.1
277,234 + CSW01_15245 0.48 +0.1
277,242 - CSW01_15245 0.48 -1.1
277,242 - CSW01_15245 0.48 +0.1
277,242 - CSW01_15245 0.48 +1.3
277,376 + CSW01_15245 0.57 +0.5
277,441 - CSW01_15245 0.62 -2.3
277,541 + CSW01_15245 0.69 +1.3
277,556 + CSW01_15245 0.70 -1.9
277,572 + CSW01_15245 0.71 +0.4
277,574 + CSW01_15245 0.71 +1.6
277,580 - CSW01_15245 0.71 +0.9
277,580 - CSW01_15245 0.71 -3.1
277,580 - CSW01_15245 0.71 -1.7
277,580 - CSW01_15245 0.71 +0.8
277,580 - CSW01_15245 0.71 -0.6
277,619 + CSW01_15245 0.74 -1.1
277,637 + CSW01_15245 0.75 +1.3
277,637 + CSW01_15245 0.75 +0.8
277,642 + CSW01_15245 0.76 -0.1
277,738 - CSW01_15245 0.82 +0.6
277,801 + CSW01_15245 0.87 +0.1
277,801 + CSW01_15245 0.87 +0.2
277,809 - CSW01_15245 0.87 -1.4
277,809 - CSW01_15245 0.87 +1.0
277,903 + -0.3
277,913 + -1.0
277,913 + +0.6
277,913 + -1.0
277,913 + -2.9
277,913 + -2.6
277,913 + -2.9
277,918 + +0.6
277,918 + +0.0
277,918 + -2.1
277,921 - -3.5
277,921 - -0.4
277,928 + -2.3
277,937 - +1.6
277,947 - -0.8
277,961 + -0.6
277,969 - +2.4
277,969 - +0.6
278,125 - -2.3
278,125 - -2.2
278,143 + +0.1
278,168 + CSW01_15250 0.14 -1.6
278,178 + CSW01_15250 0.16 +0.8
278,242 + CSW01_15250 0.28 -0.4
278,243 - CSW01_15250 0.28 +0.7
278,298 + CSW01_15250 0.39 +0.9
278,311 - CSW01_15250 0.42 -2.8
278,348 + CSW01_15250 0.49 +0.2
278,353 - CSW01_15250 0.50 +0.6
278,353 - CSW01_15250 0.50 +1.0
278,384 - CSW01_15250 0.56 +1.7
278,894 + CSW01_15255 0.18 -1.2
278,925 - CSW01_15255 0.24 -0.2
278,925 - CSW01_15255 0.24 -0.3
278,925 - CSW01_15255 0.24 -3.1
278,942 + CSW01_15255 0.27 +2.8

Or see this region's nucleotide sequence