Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_15200

Experiment: ICP3_phage_0.41_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_15190 and CSW01_15195 are separated by 8 nucleotidesCSW01_15195 and CSW01_15200 are separated by 97 nucleotidesCSW01_15200 and CSW01_15205 are separated by 365 nucleotides CSW01_15190: CSW01_15190 - L-ribulose-5-phosphate 4-epimerase, at 264,010 to 264,702 _15190 CSW01_15195: CSW01_15195 - PTS ascorbate-specific transporter subunit IIA, at 264,711 to 265,217 _15195 CSW01_15200: CSW01_15200 - PTS ascorbate transporter subunit IIC, at 265,315 to 267,075 _15200 CSW01_15205: CSW01_15205 - HTH-type transcriptional regulator UlaR, at 267,441 to 268,196 _15205 Position (kb) 265 266 267 268Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 264.362 kb on - strand, within CSW01_15190at 264.362 kb on - strand, within CSW01_15190at 264.418 kb on + strand, within CSW01_15190at 264.418 kb on + strand, within CSW01_15190at 264.426 kb on - strand, within CSW01_15190at 264.426 kb on - strand, within CSW01_15190at 264.426 kb on - strand, within CSW01_15190at 264.426 kb on - strand, within CSW01_15190at 264.447 kb on - strand, within CSW01_15190at 264.454 kb on + strand, within CSW01_15190at 264.467 kb on - strand, within CSW01_15190at 264.540 kb on - strand, within CSW01_15190at 264.627 kb on + strand, within CSW01_15190at 264.637 kb on - strandat 264.692 kb on - strandat 264.699 kb on + strandat 264.706 kb on - strandat 264.716 kb on - strandat 264.816 kb on - strand, within CSW01_15195at 264.821 kb on - strand, within CSW01_15195at 264.846 kb on + strand, within CSW01_15195at 264.967 kb on - strand, within CSW01_15195at 265.022 kb on + strand, within CSW01_15195at 265.022 kb on + strand, within CSW01_15195at 265.030 kb on - strand, within CSW01_15195at 265.030 kb on - strand, within CSW01_15195at 265.036 kb on - strand, within CSW01_15195at 265.054 kb on - strand, within CSW01_15195at 265.145 kb on + strand, within CSW01_15195at 265.145 kb on + strand, within CSW01_15195at 265.145 kb on + strand, within CSW01_15195at 265.153 kb on - strand, within CSW01_15195at 265.231 kb on + strandat 265.231 kb on + strandat 265.239 kb on - strandat 265.241 kb on + strandat 265.356 kb on - strandat 265.395 kb on - strandat 265.395 kb on - strandat 265.433 kb on + strandat 265.441 kb on - strandat 265.441 kb on - strandat 265.441 kb on - strandat 265.441 kb on - strandat 265.451 kb on - strandat 265.510 kb on + strand, within CSW01_15200at 265.523 kb on - strand, within CSW01_15200at 265.617 kb on - strand, within CSW01_15200at 265.629 kb on - strand, within CSW01_15200at 265.660 kb on - strand, within CSW01_15200at 265.680 kb on + strand, within CSW01_15200at 265.698 kb on - strand, within CSW01_15200at 265.719 kb on - strand, within CSW01_15200at 265.727 kb on - strand, within CSW01_15200at 265.727 kb on - strand, within CSW01_15200at 265.736 kb on + strand, within CSW01_15200at 265.743 kb on - strand, within CSW01_15200at 265.744 kb on - strand, within CSW01_15200at 265.821 kb on - strand, within CSW01_15200at 265.866 kb on - strand, within CSW01_15200at 265.895 kb on - strand, within CSW01_15200at 265.900 kb on - strand, within CSW01_15200at 266.089 kb on + strand, within CSW01_15200at 266.135 kb on - strand, within CSW01_15200at 266.150 kb on + strand, within CSW01_15200at 266.194 kb on - strand, within CSW01_15200at 266.269 kb on + strand, within CSW01_15200at 266.277 kb on - strand, within CSW01_15200at 266.319 kb on + strand, within CSW01_15200at 266.321 kb on + strand, within CSW01_15200at 266.327 kb on - strand, within CSW01_15200at 266.332 kb on - strand, within CSW01_15200at 266.410 kb on - strand, within CSW01_15200at 266.421 kb on + strand, within CSW01_15200at 266.429 kb on - strand, within CSW01_15200at 266.490 kb on + strand, within CSW01_15200at 266.564 kb on + strand, within CSW01_15200at 266.621 kb on - strand, within CSW01_15200at 266.630 kb on + strand, within CSW01_15200at 266.638 kb on - strand, within CSW01_15200at 266.671 kb on - strand, within CSW01_15200at 266.705 kb on - strand, within CSW01_15200at 266.813 kb on + strand, within CSW01_15200at 266.821 kb on - strand, within CSW01_15200at 266.873 kb on + strand, within CSW01_15200at 266.987 kb on - strandat 267.072 kb on + strandat 267.077 kb on + strandat 267.077 kb on + strandat 267.077 kb on + strandat 267.077 kb on + strandat 267.077 kb on + strandat 267.085 kb on - strandat 267.085 kb on - strandat 267.612 kb on - strand, within CSW01_15205at 267.653 kb on + strand, within CSW01_15205at 267.666 kb on - strand, within CSW01_15205at 267.671 kb on - strand, within CSW01_15205at 267.700 kb on + strand, within CSW01_15205at 267.739 kb on + strand, within CSW01_15205at 267.740 kb on - strand, within CSW01_15205at 267.870 kb on + strand, within CSW01_15205at 267.870 kb on + strand, within CSW01_15205at 267.877 kb on + strand, within CSW01_15205at 267.889 kb on + strand, within CSW01_15205at 267.904 kb on - strand, within CSW01_15205at 267.975 kb on + strand, within CSW01_15205at 267.983 kb on - strand, within CSW01_15205at 268.021 kb on + strand, within CSW01_15205at 268.024 kb on - strand, within CSW01_15205at 268.050 kb on + strand, within CSW01_15205at 268.058 kb on - strand, within CSW01_15205at 268.058 kb on - strand, within CSW01_15205at 268.058 kb on - strand, within CSW01_15205at 268.060 kb on + strand, within CSW01_15205

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep2
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264,362 - CSW01_15190 0.51 -1.3
264,362 - CSW01_15190 0.51 +1.3
264,418 + CSW01_15190 0.59 +0.4
264,418 + CSW01_15190 0.59 +0.4
264,426 - CSW01_15190 0.60 +0.2
264,426 - CSW01_15190 0.60 -1.9
264,426 - CSW01_15190 0.60 +0.4
264,426 - CSW01_15190 0.60 +0.4
264,447 - CSW01_15190 0.63 -0.7
264,454 + CSW01_15190 0.64 +0.7
264,467 - CSW01_15190 0.66 +0.4
264,540 - CSW01_15190 0.76 +0.9
264,627 + CSW01_15190 0.89 -2.4
264,637 - -2.2
264,692 - -1.7
264,699 + -0.1
264,706 - +1.1
264,716 - +0.6
264,816 - CSW01_15195 0.21 -0.7
264,821 - CSW01_15195 0.22 +1.2
264,846 + CSW01_15195 0.27 +0.4
264,967 - CSW01_15195 0.50 -0.5
265,022 + CSW01_15195 0.61 +0.9
265,022 + CSW01_15195 0.61 +0.3
265,030 - CSW01_15195 0.63 -0.0
265,030 - CSW01_15195 0.63 +0.8
265,036 - CSW01_15195 0.64 +2.9
265,054 - CSW01_15195 0.68 +0.8
265,145 + CSW01_15195 0.86 -1.3
265,145 + CSW01_15195 0.86 -3.3
265,145 + CSW01_15195 0.86 +1.1
265,153 - CSW01_15195 0.87 -0.4
265,231 + -1.9
265,231 + +0.1
265,239 - +0.9
265,241 + -1.2
265,356 - +1.4
265,395 - +2.0
265,395 - +1.4
265,433 + +0.6
265,441 - +0.1
265,441 - -1.5
265,441 - -1.3
265,441 - +1.4
265,451 - -0.1
265,510 + CSW01_15200 0.11 +0.8
265,523 - CSW01_15200 0.12 +0.3
265,617 - CSW01_15200 0.17 +0.5
265,629 - CSW01_15200 0.18 -0.9
265,660 - CSW01_15200 0.20 -1.5
265,680 + CSW01_15200 0.21 -1.0
265,698 - CSW01_15200 0.22 +1.7
265,719 - CSW01_15200 0.23 -1.2
265,727 - CSW01_15200 0.23 -0.1
265,727 - CSW01_15200 0.23 -0.2
265,736 + CSW01_15200 0.24 +0.0
265,743 - CSW01_15200 0.24 +1.0
265,744 - CSW01_15200 0.24 -1.4
265,821 - CSW01_15200 0.29 -2.5
265,866 - CSW01_15200 0.31 -1.8
265,895 - CSW01_15200 0.33 -1.2
265,900 - CSW01_15200 0.33 +0.1
266,089 + CSW01_15200 0.44 +0.5
266,135 - CSW01_15200 0.47 -2.6
266,150 + CSW01_15200 0.47 -0.1
266,194 - CSW01_15200 0.50 -0.1
266,269 + CSW01_15200 0.54 -0.3
266,277 - CSW01_15200 0.55 -0.8
266,319 + CSW01_15200 0.57 -0.3
266,321 + CSW01_15200 0.57 +2.0
266,327 - CSW01_15200 0.57 -0.1
266,332 - CSW01_15200 0.58 +0.5
266,410 - CSW01_15200 0.62 +1.3
266,421 + CSW01_15200 0.63 +1.0
266,429 - CSW01_15200 0.63 -3.7
266,490 + CSW01_15200 0.67 -0.7
266,564 + CSW01_15200 0.71 +1.0
266,621 - CSW01_15200 0.74 -0.1
266,630 + CSW01_15200 0.75 -1.5
266,638 - CSW01_15200 0.75 -0.1
266,671 - CSW01_15200 0.77 +2.3
266,705 - CSW01_15200 0.79 -2.8
266,813 + CSW01_15200 0.85 -2.0
266,821 - CSW01_15200 0.86 -1.3
266,873 + CSW01_15200 0.88 +2.2
266,987 - +0.2
267,072 + -1.8
267,077 + -0.7
267,077 + -0.2
267,077 + +0.7
267,077 + -1.1
267,077 + -1.4
267,085 - +0.2
267,085 - -0.2
267,612 - CSW01_15205 0.23 -0.1
267,653 + CSW01_15205 0.28 +1.5
267,666 - CSW01_15205 0.30 -0.5
267,671 - CSW01_15205 0.30 -1.2
267,700 + CSW01_15205 0.34 -3.5
267,739 + CSW01_15205 0.39 -2.6
267,740 - CSW01_15205 0.40 -2.1
267,870 + CSW01_15205 0.57 -1.0
267,870 + CSW01_15205 0.57 -0.2
267,877 + CSW01_15205 0.58 +0.1
267,889 + CSW01_15205 0.59 -2.2
267,904 - CSW01_15205 0.61 -2.0
267,975 + CSW01_15205 0.71 +0.1
267,983 - CSW01_15205 0.72 -1.4
268,021 + CSW01_15205 0.77 +1.1
268,024 - CSW01_15205 0.77 -0.2
268,050 + CSW01_15205 0.81 -1.1
268,058 - CSW01_15205 0.82 -2.5
268,058 - CSW01_15205 0.82 -3.1
268,058 - CSW01_15205 0.82 -2.9
268,060 + CSW01_15205 0.82 -2.6

Or see this region's nucleotide sequence