Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14745

Experiment: ICP3_phage_0.41_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14740 and CSW01_14745 are separated by 372 nucleotidesCSW01_14745 and CSW01_14750 are separated by 147 nucleotidesCSW01_14750 and CSW01_14755 are separated by 128 nucleotides CSW01_14740: CSW01_14740 - L-2-hydroxyglutarate oxidase, at 162,509 to 163,720 _14740 CSW01_14745: CSW01_14745 - peptidase M66, at 164,093 to 167,836 _14745 CSW01_14750: CSW01_14750 - peptide deformylase, at 167,984 to 168,490 _14750 CSW01_14755: CSW01_14755 - oxidoreductase, at 168,619 to 169,971 _14755 Position (kb) 164 165 166 167 168Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 163.124 kb on - strand, within CSW01_14740at 163.124 kb on - strand, within CSW01_14740at 163.129 kb on - strand, within CSW01_14740at 163.286 kb on - strand, within CSW01_14740at 163.291 kb on - strand, within CSW01_14740at 163.352 kb on + strand, within CSW01_14740at 163.376 kb on - strand, within CSW01_14740at 163.435 kb on + strand, within CSW01_14740at 163.493 kb on - strand, within CSW01_14740at 163.530 kb on + strand, within CSW01_14740at 163.537 kb on + strand, within CSW01_14740at 163.537 kb on + strand, within CSW01_14740at 163.538 kb on - strand, within CSW01_14740at 163.545 kb on - strand, within CSW01_14740at 163.545 kb on - strand, within CSW01_14740at 163.545 kb on - strand, within CSW01_14740at 163.550 kb on - strand, within CSW01_14740at 163.623 kb on + strandat 163.623 kb on + strandat 163.623 kb on + strandat 163.631 kb on - strandat 163.633 kb on + strandat 163.633 kb on + strandat 163.641 kb on - strandat 163.893 kb on + strandat 163.901 kb on - strandat 163.902 kb on - strandat 163.903 kb on + strandat 164.020 kb on + strandat 164.139 kb on - strandat 164.139 kb on - strandat 164.174 kb on + strandat 164.174 kb on + strandat 164.177 kb on - strandat 164.177 kb on - strandat 164.266 kb on - strandat 164.344 kb on - strandat 164.502 kb on + strand, within CSW01_14745at 164.502 kb on + strand, within CSW01_14745at 164.502 kb on + strand, within CSW01_14745at 164.502 kb on + strand, within CSW01_14745at 164.502 kb on + strand, within CSW01_14745at 164.510 kb on - strand, within CSW01_14745at 164.510 kb on - strand, within CSW01_14745at 164.510 kb on - strand, within CSW01_14745at 164.510 kb on - strand, within CSW01_14745at 164.510 kb on - strand, within CSW01_14745at 164.510 kb on - strand, within CSW01_14745at 164.526 kb on + strand, within CSW01_14745at 164.576 kb on + strand, within CSW01_14745at 164.576 kb on + strand, within CSW01_14745at 164.576 kb on + strand, within CSW01_14745at 164.588 kb on + strand, within CSW01_14745at 164.596 kb on - strand, within CSW01_14745at 164.635 kb on + strand, within CSW01_14745at 164.651 kb on + strand, within CSW01_14745at 164.678 kb on - strand, within CSW01_14745at 164.692 kb on + strand, within CSW01_14745at 164.692 kb on + strand, within CSW01_14745at 164.692 kb on + strand, within CSW01_14745at 164.771 kb on - strand, within CSW01_14745at 164.818 kb on + strand, within CSW01_14745at 164.874 kb on + strand, within CSW01_14745at 164.887 kb on - strand, within CSW01_14745at 164.901 kb on + strand, within CSW01_14745at 164.929 kb on + strand, within CSW01_14745at 164.969 kb on + strand, within CSW01_14745at 164.969 kb on + strand, within CSW01_14745at 164.969 kb on + strand, within CSW01_14745at 164.977 kb on - strand, within CSW01_14745at 164.990 kb on + strand, within CSW01_14745at 164.990 kb on + strand, within CSW01_14745at 164.998 kb on - strand, within CSW01_14745at 165.013 kb on - strand, within CSW01_14745at 165.071 kb on - strand, within CSW01_14745at 165.137 kb on + strand, within CSW01_14745at 165.145 kb on - strand, within CSW01_14745at 165.201 kb on + strand, within CSW01_14745at 165.223 kb on - strand, within CSW01_14745at 165.312 kb on - strand, within CSW01_14745at 165.325 kb on + strand, within CSW01_14745at 165.333 kb on - strand, within CSW01_14745at 165.405 kb on + strand, within CSW01_14745at 165.413 kb on - strand, within CSW01_14745at 165.415 kb on + strand, within CSW01_14745at 165.423 kb on - strand, within CSW01_14745at 165.423 kb on - strand, within CSW01_14745at 165.468 kb on + strand, within CSW01_14745at 165.472 kb on + strand, within CSW01_14745at 165.472 kb on + strand, within CSW01_14745at 165.480 kb on - strand, within CSW01_14745at 165.581 kb on + strand, within CSW01_14745at 165.589 kb on - strand, within CSW01_14745at 165.594 kb on - strand, within CSW01_14745at 165.600 kb on + strand, within CSW01_14745at 165.628 kb on + strand, within CSW01_14745at 165.631 kb on + strand, within CSW01_14745at 165.638 kb on + strand, within CSW01_14745at 165.638 kb on + strand, within CSW01_14745at 165.646 kb on - strand, within CSW01_14745at 165.646 kb on - strand, within CSW01_14745at 165.846 kb on + strand, within CSW01_14745at 165.877 kb on - strand, within CSW01_14745at 165.936 kb on - strand, within CSW01_14745at 165.974 kb on + strand, within CSW01_14745at 165.974 kb on + strand, within CSW01_14745at 165.980 kb on + strand, within CSW01_14745at 165.982 kb on - strand, within CSW01_14745at 166.030 kb on + strand, within CSW01_14745at 166.037 kb on + strand, within CSW01_14745at 166.103 kb on + strand, within CSW01_14745at 166.111 kb on - strand, within CSW01_14745at 166.152 kb on - strand, within CSW01_14745at 166.156 kb on + strand, within CSW01_14745at 166.180 kb on - strand, within CSW01_14745at 166.217 kb on + strand, within CSW01_14745at 166.230 kb on - strand, within CSW01_14745at 166.257 kb on + strand, within CSW01_14745at 166.395 kb on + strand, within CSW01_14745at 166.441 kb on - strand, within CSW01_14745at 166.556 kb on + strand, within CSW01_14745at 166.585 kb on + strand, within CSW01_14745at 166.593 kb on - strand, within CSW01_14745at 166.593 kb on - strand, within CSW01_14745at 166.615 kb on - strand, within CSW01_14745at 166.615 kb on - strand, within CSW01_14745at 166.678 kb on + strand, within CSW01_14745at 166.719 kb on - strand, within CSW01_14745at 166.750 kb on - strand, within CSW01_14745at 166.763 kb on - strand, within CSW01_14745at 166.808 kb on + strand, within CSW01_14745at 166.810 kb on - strand, within CSW01_14745at 166.810 kb on - strand, within CSW01_14745at 166.904 kb on + strand, within CSW01_14745at 166.914 kb on + strand, within CSW01_14745at 166.914 kb on + strand, within CSW01_14745at 166.914 kb on + strand, within CSW01_14745at 166.922 kb on - strand, within CSW01_14745at 166.922 kb on - strand, within CSW01_14745at 166.981 kb on + strand, within CSW01_14745at 166.981 kb on + strand, within CSW01_14745at 166.981 kb on + strand, within CSW01_14745at 166.981 kb on + strand, within CSW01_14745at 166.981 kb on + strand, within CSW01_14745at 166.989 kb on - strand, within CSW01_14745at 167.120 kb on + strand, within CSW01_14745at 167.140 kb on + strand, within CSW01_14745at 167.169 kb on + strand, within CSW01_14745at 167.177 kb on - strand, within CSW01_14745at 167.192 kb on - strand, within CSW01_14745at 167.251 kb on + strand, within CSW01_14745at 167.269 kb on - strand, within CSW01_14745at 167.321 kb on + strand, within CSW01_14745at 167.339 kb on - strand, within CSW01_14745at 167.341 kb on + strand, within CSW01_14745at 167.385 kb on + strand, within CSW01_14745at 167.393 kb on - strand, within CSW01_14745at 167.432 kb on - strand, within CSW01_14745at 167.464 kb on - strandat 167.470 kb on + strandat 167.569 kb on - strandat 167.585 kb on - strandat 167.592 kb on + strandat 167.600 kb on - strandat 167.617 kb on + strandat 167.630 kb on - strandat 167.638 kb on + strandat 167.674 kb on + strandat 167.679 kb on + strandat 167.679 kb on + strandat 167.679 kb on + strandat 167.679 kb on + strandat 167.687 kb on - strandat 167.687 kb on - strandat 167.687 kb on - strandat 167.697 kb on - strandat 167.730 kb on - strandat 167.812 kb on - strandat 167.921 kb on - strandat 167.946 kb on - strandat 167.946 kb on - strandat 167.980 kb on + strandat 168.015 kb on + strandat 168.043 kb on + strand, within CSW01_14750at 168.051 kb on - strand, within CSW01_14750at 168.051 kb on - strand, within CSW01_14750at 168.058 kb on - strand, within CSW01_14750at 168.062 kb on + strand, within CSW01_14750at 168.077 kb on - strand, within CSW01_14750at 168.085 kb on + strand, within CSW01_14750at 168.085 kb on + strand, within CSW01_14750at 168.085 kb on + strand, within CSW01_14750at 168.093 kb on - strand, within CSW01_14750at 168.093 kb on - strand, within CSW01_14750at 168.097 kb on + strand, within CSW01_14750at 168.188 kb on - strand, within CSW01_14750at 168.197 kb on + strand, within CSW01_14750at 168.281 kb on + strand, within CSW01_14750at 168.289 kb on + strand, within CSW01_14750at 168.289 kb on + strand, within CSW01_14750at 168.289 kb on + strand, within CSW01_14750at 168.289 kb on - strand, within CSW01_14750at 168.297 kb on - strand, within CSW01_14750at 168.297 kb on - strand, within CSW01_14750at 168.328 kb on + strand, within CSW01_14750at 168.328 kb on + strand, within CSW01_14750at 168.336 kb on - strand, within CSW01_14750at 168.336 kb on - strand, within CSW01_14750at 168.489 kb on + strandat 168.647 kb on + strandat 168.647 kb on + strandat 168.655 kb on - strandat 168.673 kb on - strandat 168.673 kb on - strandat 168.690 kb on + strandat 168.698 kb on - strandat 168.698 kb on - strandat 168.704 kb on - strandat 168.710 kb on - strandat 168.725 kb on - strandat 168.778 kb on - strand, within CSW01_14755at 168.813 kb on - strand, within CSW01_14755at 168.816 kb on + strand, within CSW01_14755at 168.827 kb on + strand, within CSW01_14755

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep2
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163,124 - CSW01_14740 0.51 -2.8
163,124 - CSW01_14740 0.51 -1.6
163,129 - CSW01_14740 0.51 -2.7
163,286 - CSW01_14740 0.64 -3.3
163,291 - CSW01_14740 0.65 +0.2
163,352 + CSW01_14740 0.70 +1.0
163,376 - CSW01_14740 0.72 +0.4
163,435 + CSW01_14740 0.76 -0.5
163,493 - CSW01_14740 0.81 +1.9
163,530 + CSW01_14740 0.84 -1.6
163,537 + CSW01_14740 0.85 -0.7
163,537 + CSW01_14740 0.85 -2.1
163,538 - CSW01_14740 0.85 -0.9
163,545 - CSW01_14740 0.85 -2.5
163,545 - CSW01_14740 0.85 -2.7
163,545 - CSW01_14740 0.85 +1.1
163,550 - CSW01_14740 0.86 -0.0
163,623 + +1.1
163,623 + -2.8
163,623 + +0.9
163,631 - -0.4
163,633 + +1.3
163,633 + -2.4
163,641 - -0.1
163,893 + -2.1
163,901 - +0.1
163,902 - +0.9
163,903 + -0.1
164,020 + -0.1
164,139 - +1.2
164,139 - +1.2
164,174 + -3.6
164,174 + +0.1
164,177 - +0.7
164,177 - -1.0
164,266 - -0.1
164,344 - -2.3
164,502 + CSW01_14745 0.11 +0.3
164,502 + CSW01_14745 0.11 -0.2
164,502 + CSW01_14745 0.11 +1.2
164,502 + CSW01_14745 0.11 +0.5
164,502 + CSW01_14745 0.11 -0.3
164,510 - CSW01_14745 0.11 +1.2
164,510 - CSW01_14745 0.11 +0.9
164,510 - CSW01_14745 0.11 +0.1
164,510 - CSW01_14745 0.11 +0.5
164,510 - CSW01_14745 0.11 -1.3
164,510 - CSW01_14745 0.11 -0.8
164,526 + CSW01_14745 0.12 -3.8
164,576 + CSW01_14745 0.13 +1.5
164,576 + CSW01_14745 0.13 -0.6
164,576 + CSW01_14745 0.13 -0.6
164,588 + CSW01_14745 0.13 -0.2
164,596 - CSW01_14745 0.13 +0.3
164,635 + CSW01_14745 0.14 -0.2
164,651 + CSW01_14745 0.15 +1.3
164,678 - CSW01_14745 0.16 +1.0
164,692 + CSW01_14745 0.16 -3.2
164,692 + CSW01_14745 0.16 -0.9
164,692 + CSW01_14745 0.16 -1.4
164,771 - CSW01_14745 0.18 +0.8
164,818 + CSW01_14745 0.19 -0.7
164,874 + CSW01_14745 0.21 +1.7
164,887 - CSW01_14745 0.21 +0.3
164,901 + CSW01_14745 0.22 +0.4
164,929 + CSW01_14745 0.22 -2.2
164,969 + CSW01_14745 0.23 +0.1
164,969 + CSW01_14745 0.23 +1.0
164,969 + CSW01_14745 0.23 +0.6
164,977 - CSW01_14745 0.24 +0.3
164,990 + CSW01_14745 0.24 +0.6
164,990 + CSW01_14745 0.24 -0.4
164,998 - CSW01_14745 0.24 +1.6
165,013 - CSW01_14745 0.25 -0.3
165,071 - CSW01_14745 0.26 +1.1
165,137 + CSW01_14745 0.28 -1.7
165,145 - CSW01_14745 0.28 +0.4
165,201 + CSW01_14745 0.30 +0.3
165,223 - CSW01_14745 0.30 -0.6
165,312 - CSW01_14745 0.33 -2.3
165,325 + CSW01_14745 0.33 -0.0
165,333 - CSW01_14745 0.33 +1.0
165,405 + CSW01_14745 0.35 -0.2
165,413 - CSW01_14745 0.35 -3.2
165,415 + CSW01_14745 0.35 -0.2
165,423 - CSW01_14745 0.36 -3.0
165,423 - CSW01_14745 0.36 -3.0
165,468 + CSW01_14745 0.37 +1.0
165,472 + CSW01_14745 0.37 -0.8
165,472 + CSW01_14745 0.37 -2.4
165,480 - CSW01_14745 0.37 +1.2
165,581 + CSW01_14745 0.40 -1.8
165,589 - CSW01_14745 0.40 -4.1
165,594 - CSW01_14745 0.40 -1.6
165,600 + CSW01_14745 0.40 -1.1
165,628 + CSW01_14745 0.41 +0.3
165,631 + CSW01_14745 0.41 +1.1
165,638 + CSW01_14745 0.41 +0.1
165,638 + CSW01_14745 0.41 -1.4
165,646 - CSW01_14745 0.41 +0.2
165,646 - CSW01_14745 0.41 +0.2
165,846 + CSW01_14745 0.47 -2.4
165,877 - CSW01_14745 0.48 -1.3
165,936 - CSW01_14745 0.49 +0.3
165,974 + CSW01_14745 0.50 -1.8
165,974 + CSW01_14745 0.50 -1.4
165,980 + CSW01_14745 0.50 +1.2
165,982 - CSW01_14745 0.50 +0.2
166,030 + CSW01_14745 0.52 +0.9
166,037 + CSW01_14745 0.52 +0.9
166,103 + CSW01_14745 0.54 -0.6
166,111 - CSW01_14745 0.54 +0.5
166,152 - CSW01_14745 0.55 +0.3
166,156 + CSW01_14745 0.55 +0.2
166,180 - CSW01_14745 0.56 -0.9
166,217 + CSW01_14745 0.57 -1.6
166,230 - CSW01_14745 0.57 +0.5
166,257 + CSW01_14745 0.58 -0.3
166,395 + CSW01_14745 0.61 -0.3
166,441 - CSW01_14745 0.63 +0.9
166,556 + CSW01_14745 0.66 +0.1
166,585 + CSW01_14745 0.67 +0.4
166,593 - CSW01_14745 0.67 -3.4
166,593 - CSW01_14745 0.67 -1.4
166,615 - CSW01_14745 0.67 -2.6
166,615 - CSW01_14745 0.67 +1.6
166,678 + CSW01_14745 0.69 +2.8
166,719 - CSW01_14745 0.70 -0.7
166,750 - CSW01_14745 0.71 +1.4
166,763 - CSW01_14745 0.71 -0.2
166,808 + CSW01_14745 0.73 +1.2
166,810 - CSW01_14745 0.73 +1.1
166,810 - CSW01_14745 0.73 -0.7
166,904 + CSW01_14745 0.75 +0.3
166,914 + CSW01_14745 0.75 -2.8
166,914 + CSW01_14745 0.75 +0.2
166,914 + CSW01_14745 0.75 -2.9
166,922 - CSW01_14745 0.76 +1.1
166,922 - CSW01_14745 0.76 +0.5
166,981 + CSW01_14745 0.77 +0.1
166,981 + CSW01_14745 0.77 -0.3
166,981 + CSW01_14745 0.77 -1.1
166,981 + CSW01_14745 0.77 -1.5
166,981 + CSW01_14745 0.77 +0.4
166,989 - CSW01_14745 0.77 +1.3
167,120 + CSW01_14745 0.81 -3.4
167,140 + CSW01_14745 0.81 -0.1
167,169 + CSW01_14745 0.82 +1.3
167,177 - CSW01_14745 0.82 +1.4
167,192 - CSW01_14745 0.83 +1.2
167,251 + CSW01_14745 0.84 -2.5
167,269 - CSW01_14745 0.85 +0.9
167,321 + CSW01_14745 0.86 -0.6
167,339 - CSW01_14745 0.87 +0.3
167,341 + CSW01_14745 0.87 -0.4
167,385 + CSW01_14745 0.88 +0.6
167,393 - CSW01_14745 0.88 -3.0
167,432 - CSW01_14745 0.89 +2.4
167,464 - -1.7
167,470 + +0.2
167,569 - -0.8
167,585 - +0.3
167,592 + +0.8
167,600 - +1.9
167,617 + +0.4
167,630 - +0.1
167,638 + +0.3
167,674 + -1.0
167,679 + +0.0
167,679 + -2.0
167,679 + +0.8
167,679 + -3.0
167,687 - -0.2
167,687 - +0.9
167,687 - +1.7
167,697 - -1.8
167,730 - +0.8
167,812 - -2.5
167,921 - -2.3
167,946 - +1.6
167,946 - -1.6
167,980 + +0.6
168,015 + -0.6
168,043 + CSW01_14750 0.12 -0.1
168,051 - CSW01_14750 0.13 +0.6
168,051 - CSW01_14750 0.13 +1.3
168,058 - CSW01_14750 0.15 +0.9
168,062 + CSW01_14750 0.15 -2.7
168,077 - CSW01_14750 0.18 +1.4
168,085 + CSW01_14750 0.20 +0.3
168,085 + CSW01_14750 0.20 -2.6
168,085 + CSW01_14750 0.20 +1.7
168,093 - CSW01_14750 0.21 -0.1
168,093 - CSW01_14750 0.21 +1.3
168,097 + CSW01_14750 0.22 +0.9
168,188 - CSW01_14750 0.40 +0.8
168,197 + CSW01_14750 0.42 -2.7
168,281 + CSW01_14750 0.59 +1.7
168,289 + CSW01_14750 0.60 +0.0
168,289 + CSW01_14750 0.60 +0.7
168,289 + CSW01_14750 0.60 +0.8
168,289 - CSW01_14750 0.60 -2.2
168,297 - CSW01_14750 0.62 -1.4
168,297 - CSW01_14750 0.62 +0.3
168,328 + CSW01_14750 0.68 -0.1
168,328 + CSW01_14750 0.68 -0.8
168,336 - CSW01_14750 0.69 +1.2
168,336 - CSW01_14750 0.69 -3.9
168,489 + +0.2
168,647 + -2.3
168,647 + +0.3
168,655 - -0.2
168,673 - +2.1
168,673 - -0.5
168,690 + -1.8
168,698 - +0.8
168,698 - -0.6
168,704 - +0.7
168,710 - +1.0
168,725 - +0.7
168,778 - CSW01_14755 0.12 -0.7
168,813 - CSW01_14755 0.14 +0.6
168,816 + CSW01_14755 0.15 -2.4
168,827 + CSW01_14755 0.15 -0.4

Or see this region's nucleotide sequence