Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14185

Experiment: ICP3_phage_0.41_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14180 and CSW01_14185 are separated by 431 nucleotidesCSW01_14185 and CSW01_14190 are separated by 21 nucleotidesCSW01_14190 and CSW01_14195 are separated by 89 nucleotides CSW01_14180: CSW01_14180 - hypothetical protein, at 31,967 to 32,602 _14180 CSW01_14185: CSW01_14185 - chitinase, at 33,034 to 35,583 _14185 CSW01_14190: CSW01_14190 - hypothetical protein, at 35,605 to 35,859 _14190 CSW01_14195: CSW01_14195 - IclR family transcriptional regulator, at 35,949 to 36,683 _14195 Position (kb) 33 34 35 36Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 32.088 kb on + strand, within CSW01_14180at 32.088 kb on + strand, within CSW01_14180at 32.112 kb on - strand, within CSW01_14180at 32.114 kb on + strand, within CSW01_14180at 32.122 kb on - strand, within CSW01_14180at 32.244 kb on + strand, within CSW01_14180at 32.476 kb on + strand, within CSW01_14180at 32.476 kb on + strand, within CSW01_14180at 32.484 kb on - strand, within CSW01_14180at 32.544 kb on - strandat 32.588 kb on - strandat 32.588 kb on - strandat 32.596 kb on - strandat 32.634 kb on + strandat 32.677 kb on + strandat 32.677 kb on + strandat 32.686 kb on - strandat 33.068 kb on - strandat 33.189 kb on - strandat 33.196 kb on + strandat 33.238 kb on - strandat 33.284 kb on + strandat 33.292 kb on - strand, within CSW01_14185at 33.292 kb on - strand, within CSW01_14185at 33.342 kb on + strand, within CSW01_14185at 33.342 kb on + strand, within CSW01_14185at 33.348 kb on + strand, within CSW01_14185at 33.442 kb on - strand, within CSW01_14185at 33.447 kb on + strand, within CSW01_14185at 33.455 kb on - strand, within CSW01_14185at 33.486 kb on + strand, within CSW01_14185at 33.486 kb on + strand, within CSW01_14185at 33.488 kb on - strand, within CSW01_14185at 33.494 kb on - strand, within CSW01_14185at 33.494 kb on - strand, within CSW01_14185at 33.494 kb on - strand, within CSW01_14185at 33.494 kb on - strand, within CSW01_14185at 33.494 kb on - strand, within CSW01_14185at 33.494 kb on - strand, within CSW01_14185at 33.494 kb on - strand, within CSW01_14185at 33.532 kb on + strand, within CSW01_14185at 33.572 kb on + strand, within CSW01_14185at 33.577 kb on + strand, within CSW01_14185at 33.577 kb on + strand, within CSW01_14185at 33.613 kb on - strand, within CSW01_14185at 33.681 kb on + strand, within CSW01_14185at 33.689 kb on - strand, within CSW01_14185at 33.689 kb on - strand, within CSW01_14185at 33.689 kb on - strand, within CSW01_14185at 33.689 kb on - strand, within CSW01_14185at 33.728 kb on - strand, within CSW01_14185at 33.768 kb on - strand, within CSW01_14185at 33.864 kb on + strand, within CSW01_14185at 33.874 kb on + strand, within CSW01_14185at 34.035 kb on + strand, within CSW01_14185at 34.053 kb on - strand, within CSW01_14185at 34.060 kb on - strand, within CSW01_14185at 34.158 kb on - strand, within CSW01_14185at 34.170 kb on - strand, within CSW01_14185at 34.191 kb on - strand, within CSW01_14185at 34.191 kb on - strand, within CSW01_14185at 34.191 kb on - strand, within CSW01_14185at 34.191 kb on - strand, within CSW01_14185at 34.191 kb on - strand, within CSW01_14185at 34.249 kb on + strand, within CSW01_14185at 34.249 kb on + strand, within CSW01_14185at 34.257 kb on - strand, within CSW01_14185at 34.274 kb on + strand, within CSW01_14185at 34.282 kb on - strand, within CSW01_14185at 34.282 kb on - strand, within CSW01_14185at 34.352 kb on + strand, within CSW01_14185at 34.411 kb on + strand, within CSW01_14185at 34.411 kb on + strand, within CSW01_14185at 34.411 kb on + strand, within CSW01_14185at 34.419 kb on - strand, within CSW01_14185at 34.419 kb on - strand, within CSW01_14185at 34.431 kb on - strand, within CSW01_14185at 34.441 kb on - strand, within CSW01_14185at 34.502 kb on - strand, within CSW01_14185at 34.542 kb on + strand, within CSW01_14185at 34.550 kb on - strand, within CSW01_14185at 34.636 kb on + strand, within CSW01_14185at 34.644 kb on + strand, within CSW01_14185at 34.729 kb on + strand, within CSW01_14185at 34.778 kb on - strand, within CSW01_14185at 34.859 kb on + strand, within CSW01_14185at 34.862 kb on - strand, within CSW01_14185at 34.908 kb on + strand, within CSW01_14185at 34.920 kb on - strand, within CSW01_14185at 34.954 kb on - strand, within CSW01_14185at 34.957 kb on + strand, within CSW01_14185at 34.982 kb on + strand, within CSW01_14185at 34.990 kb on - strand, within CSW01_14185at 34.990 kb on - strand, within CSW01_14185at 35.063 kb on - strand, within CSW01_14185at 35.078 kb on + strand, within CSW01_14185at 35.091 kb on - strand, within CSW01_14185at 35.117 kb on - strand, within CSW01_14185at 35.124 kb on - strand, within CSW01_14185at 35.160 kb on + strand, within CSW01_14185at 35.179 kb on - strand, within CSW01_14185at 35.189 kb on + strand, within CSW01_14185at 35.210 kb on - strand, within CSW01_14185at 35.307 kb on - strand, within CSW01_14185at 35.316 kb on - strand, within CSW01_14185at 35.365 kb on + strandat 35.373 kb on - strandat 35.442 kb on + strandat 35.442 kb on + strandat 35.450 kb on - strandat 35.450 kb on - strandat 35.466 kb on + strandat 35.499 kb on - strandat 35.535 kb on + strandat 35.561 kb on - strandat 35.570 kb on + strandat 35.570 kb on + strandat 35.591 kb on + strandat 35.591 kb on + strandat 35.591 kb on + strandat 35.599 kb on - strandat 35.599 kb on - strandat 35.599 kb on - strandat 35.601 kb on + strandat 35.637 kb on + strand, within CSW01_14190at 35.637 kb on + strand, within CSW01_14190at 35.645 kb on - strand, within CSW01_14190at 35.647 kb on + strand, within CSW01_14190at 35.647 kb on + strand, within CSW01_14190at 35.657 kb on + strand, within CSW01_14190at 35.704 kb on - strand, within CSW01_14190at 35.777 kb on + strand, within CSW01_14190at 35.785 kb on - strand, within CSW01_14190at 35.926 kb on + strandat 35.938 kb on + strandat 36.225 kb on + strand, within CSW01_14195at 36.225 kb on + strand, within CSW01_14195at 36.225 kb on + strand, within CSW01_14195at 36.233 kb on - strand, within CSW01_14195at 36.233 kb on - strand, within CSW01_14195at 36.233 kb on - strand, within CSW01_14195at 36.235 kb on - strand, within CSW01_14195at 36.365 kb on + strand, within CSW01_14195at 36.365 kb on + strand, within CSW01_14195at 36.373 kb on - strand, within CSW01_14195at 36.373 kb on - strand, within CSW01_14195at 36.406 kb on - strand, within CSW01_14195at 36.455 kb on - strand, within CSW01_14195at 36.493 kb on + strand, within CSW01_14195at 36.542 kb on + strand, within CSW01_14195at 36.570 kb on + strand, within CSW01_14195at 36.578 kb on - strand, within CSW01_14195

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep2
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32,088 + CSW01_14180 0.19 +0.7
32,088 + CSW01_14180 0.19 +0.9
32,112 - CSW01_14180 0.23 -2.4
32,114 + CSW01_14180 0.23 +0.9
32,122 - CSW01_14180 0.24 +0.4
32,244 + CSW01_14180 0.44 +0.0
32,476 + CSW01_14180 0.80 +1.6
32,476 + CSW01_14180 0.80 -2.4
32,484 - CSW01_14180 0.81 -0.1
32,544 - +0.4
32,588 - -1.1
32,588 - +0.5
32,596 - -3.1
32,634 + -0.5
32,677 + -2.3
32,677 + +0.9
32,686 - -0.7
33,068 - -0.8
33,189 - -2.8
33,196 + -0.1
33,238 - +1.2
33,284 + +0.8
33,292 - CSW01_14185 0.10 +0.7
33,292 - CSW01_14185 0.10 -0.3
33,342 + CSW01_14185 0.12 -0.1
33,342 + CSW01_14185 0.12 +0.8
33,348 + CSW01_14185 0.12 +2.8
33,442 - CSW01_14185 0.16 -1.1
33,447 + CSW01_14185 0.16 -2.1
33,455 - CSW01_14185 0.17 +0.4
33,486 + CSW01_14185 0.18 +0.3
33,486 + CSW01_14185 0.18 -0.2
33,488 - CSW01_14185 0.18 -0.7
33,494 - CSW01_14185 0.18 +0.3
33,494 - CSW01_14185 0.18 +0.4
33,494 - CSW01_14185 0.18 -0.9
33,494 - CSW01_14185 0.18 +0.2
33,494 - CSW01_14185 0.18 +0.5
33,494 - CSW01_14185 0.18 +0.0
33,494 - CSW01_14185 0.18 +1.6
33,532 + CSW01_14185 0.20 +0.5
33,572 + CSW01_14185 0.21 +1.0
33,577 + CSW01_14185 0.21 +1.1
33,577 + CSW01_14185 0.21 -0.2
33,613 - CSW01_14185 0.23 +0.5
33,681 + CSW01_14185 0.25 +0.2
33,689 - CSW01_14185 0.26 +0.7
33,689 - CSW01_14185 0.26 -0.5
33,689 - CSW01_14185 0.26 +0.9
33,689 - CSW01_14185 0.26 +0.4
33,728 - CSW01_14185 0.27 -2.2
33,768 - CSW01_14185 0.29 +0.4
33,864 + CSW01_14185 0.33 -3.4
33,874 + CSW01_14185 0.33 +0.3
34,035 + CSW01_14185 0.39 -0.5
34,053 - CSW01_14185 0.40 +1.1
34,060 - CSW01_14185 0.40 +1.4
34,158 - CSW01_14185 0.44 +3.1
34,170 - CSW01_14185 0.45 +1.7
34,191 - CSW01_14185 0.45 -0.3
34,191 - CSW01_14185 0.45 -0.0
34,191 - CSW01_14185 0.45 +1.1
34,191 - CSW01_14185 0.45 -1.9
34,191 - CSW01_14185 0.45 +1.0
34,249 + CSW01_14185 0.48 +0.2
34,249 + CSW01_14185 0.48 -1.7
34,257 - CSW01_14185 0.48 -0.3
34,274 + CSW01_14185 0.49 +1.5
34,282 - CSW01_14185 0.49 +0.3
34,282 - CSW01_14185 0.49 +0.6
34,352 + CSW01_14185 0.52 +0.1
34,411 + CSW01_14185 0.54 +1.5
34,411 + CSW01_14185 0.54 -0.3
34,411 + CSW01_14185 0.54 -2.4
34,419 - CSW01_14185 0.54 +1.3
34,419 - CSW01_14185 0.54 -3.7
34,431 - CSW01_14185 0.55 -2.6
34,441 - CSW01_14185 0.55 -2.5
34,502 - CSW01_14185 0.58 +0.4
34,542 + CSW01_14185 0.59 -0.7
34,550 - CSW01_14185 0.59 +0.9
34,636 + CSW01_14185 0.63 +0.9
34,644 + CSW01_14185 0.63 -2.2
34,729 + CSW01_14185 0.66 +0.8
34,778 - CSW01_14185 0.68 +0.1
34,859 + CSW01_14185 0.72 -0.4
34,862 - CSW01_14185 0.72 +0.5
34,908 + CSW01_14185 0.73 +1.6
34,920 - CSW01_14185 0.74 -1.3
34,954 - CSW01_14185 0.75 -3.0
34,957 + CSW01_14185 0.75 -0.6
34,982 + CSW01_14185 0.76 -2.8
34,990 - CSW01_14185 0.77 -1.8
34,990 - CSW01_14185 0.77 +0.5
35,063 - CSW01_14185 0.80 -0.4
35,078 + CSW01_14185 0.80 -1.1
35,091 - CSW01_14185 0.81 +0.8
35,117 - CSW01_14185 0.82 -2.6
35,124 - CSW01_14185 0.82 +0.1
35,160 + CSW01_14185 0.83 +1.3
35,179 - CSW01_14185 0.84 -2.5
35,189 + CSW01_14185 0.85 +1.3
35,210 - CSW01_14185 0.85 +0.5
35,307 - CSW01_14185 0.89 +0.4
35,316 - CSW01_14185 0.89 -2.9
35,365 + +0.5
35,373 - +1.8
35,442 + +0.3
35,442 + -0.0
35,450 - -0.8
35,450 - +0.3
35,466 + -2.0
35,499 - -0.6
35,535 + +1.5
35,561 - +0.4
35,570 + +0.6
35,570 + -2.1
35,591 + -0.1
35,591 + +0.7
35,591 + -2.3
35,599 - -0.7
35,599 - -1.3
35,599 - -1.1
35,601 + -3.2
35,637 + CSW01_14190 0.13 -0.5
35,637 + CSW01_14190 0.13 +0.6
35,645 - CSW01_14190 0.16 -0.2
35,647 + CSW01_14190 0.16 +0.1
35,647 + CSW01_14190 0.16 +2.4
35,657 + CSW01_14190 0.20 -3.1
35,704 - CSW01_14190 0.39 +0.5
35,777 + CSW01_14190 0.67 +0.2
35,785 - CSW01_14190 0.71 +0.6
35,926 + +0.5
35,938 + +1.8
36,225 + CSW01_14195 0.38 +1.4
36,225 + CSW01_14195 0.38 +1.8
36,225 + CSW01_14195 0.38 -0.2
36,233 - CSW01_14195 0.39 -1.0
36,233 - CSW01_14195 0.39 -0.2
36,233 - CSW01_14195 0.39 +1.3
36,235 - CSW01_14195 0.39 -1.6
36,365 + CSW01_14195 0.57 -2.1
36,365 + CSW01_14195 0.57 -2.8
36,373 - CSW01_14195 0.58 -1.4
36,373 - CSW01_14195 0.58 -2.7
36,406 - CSW01_14195 0.62 +1.2
36,455 - CSW01_14195 0.69 +0.2
36,493 + CSW01_14195 0.74 -3.2
36,542 + CSW01_14195 0.81 +0.9
36,570 + CSW01_14195 0.84 +0.6
36,578 - CSW01_14195 0.86 -2.4

Or see this region's nucleotide sequence