Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_13385

Experiment: ICP3_phage_0.41_MOI_rep2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	ICP3_phage_0.41_MOI_rep2
2,847,668	+		CSW01_13380	0.23	-0.7
2,847,702	+		CSW01_13380	0.27	-0.6
2,847,741	+		CSW01_13380	0.31	-0.7
2,847,747	+		CSW01_13380	0.31	+1.0
2,847,747	+		CSW01_13380	0.31	-2.5
2,847,766	+		CSW01_13380	0.33	-2.2
2,847,766	+		CSW01_13380	0.33	-1.1
2,847,766	+		CSW01_13380	0.33	+0.4
2,847,766	+		CSW01_13380	0.33	+0.3
2,847,766	+		CSW01_13380	0.33	-1.5
2,847,774	-		CSW01_13380	0.34	+0.7
2,847,774	-		CSW01_13380	0.34	+0.7
2,847,774	-		CSW01_13380	0.34	-0.4
2,847,774	-		CSW01_13380	0.34	-1.8
2,847,774	-		CSW01_13380	0.34	-0.0
2,847,774	-		CSW01_13380	0.34	-4.3
2,847,774	-		CSW01_13380	0.34	+1.1
2,847,774	-		CSW01_13380	0.34	-0.6
2,847,774	-		CSW01_13380	0.34	-0.1
2,847,774	-		CSW01_13380	0.34	-3.6
2,847,774	-		CSW01_13380	0.34	-0.8
2,847,801	+		CSW01_13380	0.37	+0.8
2,847,810	-		CSW01_13380	0.38	+0.9
2,847,812	+		CSW01_13380	0.38	-0.4
2,847,812	+		CSW01_13380	0.38	-2.7
2,847,812	+		CSW01_13380	0.38	-3.0
2,847,812	+		CSW01_13380	0.38	-2.4
2,847,812	+		CSW01_13380	0.38	+0.4
2,847,820	-		CSW01_13380	0.39	-1.9
2,847,820	-		CSW01_13380	0.39	-1.4
2,847,820	-		CSW01_13380	0.39	+0.9
2,847,820	-		CSW01_13380	0.39	+0.8
2,847,857	+		CSW01_13380	0.42	+0.9
2,847,874	+		CSW01_13380	0.44	+0.5
2,847,886	-		CSW01_13380	0.45	+0.6
2,847,904	+		CSW01_13380	0.47	+0.6
2,847,904	+		CSW01_13380	0.47	-0.3
2,847,912	-		CSW01_13380	0.48	+0.6
2,847,912	-		CSW01_13380	0.48	-0.8
2,847,912	-		CSW01_13380	0.48	-0.4
2,847,931	+		CSW01_13380	0.50	+0.7
2,847,933	-		CSW01_13380	0.50	-3.4
2,848,021	+		CSW01_13380	0.59	+0.9
2,848,041	-		CSW01_13380	0.61	-3.4
2,848,071	+		CSW01_13380	0.64	-0.3
2,848,098	+		CSW01_13380	0.66	+0.8
2,848,179	-		CSW01_13380	0.74	+0.6
2,848,181	-		CSW01_13380	0.75	-2.2
2,848,212	+		CSW01_13380	0.78	-0.2
2,848,220	-		CSW01_13380	0.79	-2.4
2,848,234	+		CSW01_13380	0.80	+1.8
2,848,244	+		CSW01_13380	0.81	-1.4
2,848,249	+		CSW01_13380	0.81	+0.2
2,848,249	+		CSW01_13380	0.81	-0.1
2,848,322	-		CSW01_13380	0.89	-0.8
2,848,322	-		CSW01_13380	0.89	-0.5
2,848,335	+				-1.1
2,848,336	+				-1.9
2,848,336	+				-1.1
2,848,336	+				+1.0
2,848,336	+				+1.2
2,848,344	-				-0.1
2,848,376	+				+0.9
2,848,386	+				+1.1
2,848,394	-				-0.6
2,848,394	-				-1.1
2,848,405	-				+0.3
2,848,446	+				-2.4
2,848,613	+				-3.0
2,848,613	+				-0.3
2,848,613	+				-3.4
2,848,621	-				-1.3
2,848,628	+				-0.8
2,848,631	-				+1.5
2,848,631	-				+0.5
2,848,656	-				+0.4
2,848,683	-				+0.3
2,848,817	+		CSW01_13385	0.20	+0.5
2,848,817	+		CSW01_13385	0.20	+0.6
2,848,817	+		CSW01_13385	0.20	-0.1
2,848,825	-		CSW01_13385	0.21	+0.1
2,848,825	-		CSW01_13385	0.21	+0.5
2,848,825	-		CSW01_13385	0.21	-0.2
2,848,825	-		CSW01_13385	0.21	+1.1
2,848,825	-		CSW01_13385	0.21	+1.4
2,848,825	-		CSW01_13385	0.21	-3.1
2,848,825	-		CSW01_13385	0.21	+0.0
2,848,825	-		CSW01_13385	0.21	-0.2
2,848,921	-		CSW01_13385	0.29	-0.1
2,849,029	-		CSW01_13385	0.39	-0.0
2,849,034	-		CSW01_13385	0.39	+0.5
2,849,071	-		CSW01_13385	0.42	+0.9
2,849,092	+		CSW01_13385	0.44	+0.4
2,849,100	-		CSW01_13385	0.45	+0.2
2,849,105	-		CSW01_13385	0.45	-0.2
2,849,112	+		CSW01_13385	0.46	+1.2
2,849,120	-		CSW01_13385	0.47	-1.4
2,849,120	-		CSW01_13385	0.47	+0.6
2,849,182	+		CSW01_13385	0.52	-1.2
2,849,190	-		CSW01_13385	0.53	+0.2
2,849,190	-		CSW01_13385	0.53	+2.5
2,849,284	+		CSW01_13385	0.61	+0.8
2,849,289	+		CSW01_13385	0.61	-0.2
2,849,296	+		CSW01_13385	0.62	-0.3
2,849,326	-		CSW01_13385	0.65	-4.8
2,849,341	-		CSW01_13385	0.66	-3.1
2,849,354	+		CSW01_13385	0.67	+0.0
2,849,381	-		CSW01_13385	0.70	+0.3
2,849,381	-		CSW01_13385	0.70	+1.5
2,849,394	+		CSW01_13385	0.71	-2.6
2,849,429	-		CSW01_13385	0.74	+1.4
2,849,441	-		CSW01_13385	0.75	-0.9
2,849,507	-		CSW01_13385	0.81	+1.6
2,849,524	+		CSW01_13385	0.82	+1.3
2,849,557	+		CSW01_13385	0.85	-0.1
2,849,559	+		CSW01_13385	0.85	-2.5
2,849,565	-		CSW01_13385	0.86	-2.1
2,849,565	-		CSW01_13385	0.86	-4.3
2,849,605	+		CSW01_13385	0.89	-2.9
2,849,613	-				-2.3
2,849,617	+				-0.0
2,849,704	-				-0.0
2,849,704	-				+0.5
2,849,973	+				+0.2
2,849,974	-				-0.4
2,850,078	+				-2.6
2,850,133	+				-0.7
2,850,193	+				+0.8
2,850,193	+				+0.7
2,850,193	+				-1.8
2,850,193	+				-0.8
2,850,193	+				-1.1
2,850,201	-		CSW01_13390	0.10	+0.8
2,850,201	-		CSW01_13390	0.10	+0.2
2,850,201	-		CSW01_13390	0.10	-1.9
2,850,201	-		CSW01_13390	0.10	+0.1
2,850,216	+		CSW01_13390	0.11	-2.9
2,850,299	+		CSW01_13390	0.14	+0.7
2,850,331	+		CSW01_13390	0.15	+1.9
2,850,339	-		CSW01_13390	0.15	-1.0
2,850,339	-		CSW01_13390	0.15	-2.5
2,850,339	-		CSW01_13390	0.15	+1.4
2,850,406	+		CSW01_13390	0.18	-0.5
2,850,411	+		CSW01_13390	0.18	+1.0
2,850,419	-		CSW01_13390	0.18	-0.8
2,850,421	+		CSW01_13390	0.19	+0.3
2,850,430	+		CSW01_13390	0.19	+1.7
2,850,432	+		CSW01_13390	0.19	-0.3
2,850,432	+		CSW01_13390	0.19	+2.7
2,850,440	-		CSW01_13390	0.19	+2.2
2,850,440	-		CSW01_13390	0.19	-0.8
2,850,440	-		CSW01_13390	0.19	-2.4
2,850,445	+		CSW01_13390	0.19	-3.5
2,850,445	+		CSW01_13390	0.19	-0.1
2,850,453	-		CSW01_13390	0.20	+0.4
2,850,453	-		CSW01_13390	0.20	-4.1
2,850,453	-		CSW01_13390	0.20	-3.3
2,850,573	+		CSW01_13390	0.24	-0.9
2,850,589	+		CSW01_13390	0.25	+0.7
2,850,603	+		CSW01_13390	0.25	+0.2
2,850,613	+		CSW01_13390	0.26	-2.4
2,850,621	-		CSW01_13390	0.26	+1.3
2,850,637	-		CSW01_13390	0.27	+0.9
2,850,695	+		CSW01_13390	0.29	-2.9
2,850,695	+		CSW01_13390	0.29	+0.6
2,850,701	-		CSW01_13390	0.29	+1.2
2,850,702	-		CSW01_13390	0.29	+1.1