Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_12020

Experiment: ICP3_phage_0.41_MOI_rep2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	ICP3_phage_0.41_MOI_rep2
2,561,637	+		CSW01_12015	0.68	+1.2
2,561,677	-		CSW01_12015	0.72	-3.0
2,561,727	+		CSW01_12015	0.77	-0.7
2,561,845	-		CSW01_12015	0.89	-0.3
2,561,854	+				-2.2
2,561,862	-				-0.9
2,561,862	-				-0.9
2,561,862	-				+0.5
2,561,869	-				+0.4
2,561,915	-				-2.6
2,561,929	-				+0.6
2,561,935	-				+0.7
2,562,250	+				-0.9
2,562,295	+				-3.4
2,562,359	+				-2.8
2,562,367	-				+0.8
2,562,396	+				-1.0
2,562,396	+				-2.8
2,562,396	+				-0.9
2,562,556	-				-1.3
2,562,667	+				+0.6
2,562,679	-				+2.1
2,562,684	+				-3.9
2,562,766	-				-4.3
2,562,791	-				+0.3
2,562,822	-				+2.3
2,562,901	-				-1.8
2,562,933	+		CSW01_12020	0.10	-1.9
2,562,933	+		CSW01_12020	0.10	-2.6
2,563,044	-		CSW01_12020	0.13	-1.3
2,563,088	+		CSW01_12020	0.14	+0.6
2,563,125	+		CSW01_12020	0.14	+1.6
2,563,152	-		CSW01_12020	0.15	+0.9
2,563,187	+		CSW01_12020	0.16	-2.4
2,563,215	+		CSW01_12020	0.16	-3.9
2,563,216	+		CSW01_12020	0.16	-4.0
2,563,242	+		CSW01_12020	0.17	+1.0
2,563,273	+		CSW01_12020	0.18	-1.1
2,563,278	+		CSW01_12020	0.18	-1.1
2,563,286	-		CSW01_12020	0.18	+0.6
2,563,305	-		CSW01_12020	0.18	+0.0
2,563,305	-		CSW01_12020	0.18	+2.0
2,563,315	-		CSW01_12020	0.19	+0.7
2,563,324	+		CSW01_12020	0.19	+0.1
2,563,390	+		CSW01_12020	0.20	-3.3
2,563,429	+		CSW01_12020	0.21	-0.6
2,563,437	-		CSW01_12020	0.21	-2.4
2,563,455	+		CSW01_12020	0.22	+0.4
2,563,475	-		CSW01_12020	0.22	-3.1
2,563,548	+		CSW01_12020	0.24	+1.9
2,563,568	+		CSW01_12020	0.24	-3.1
2,563,571	-		CSW01_12020	0.24	-3.6
2,563,596	+		CSW01_12020	0.25	-1.1
2,563,607	+		CSW01_12020	0.25	-4.2
2,563,607	+		CSW01_12020	0.25	+1.1
2,563,643	+		CSW01_12020	0.26	-2.2
2,563,643	+		CSW01_12020	0.26	+0.8
2,563,649	-		CSW01_12020	0.26	-1.1
2,563,718	-		CSW01_12020	0.27	-1.2
2,563,723	-		CSW01_12020	0.27	+0.6
2,563,763	+		CSW01_12020	0.28	+0.7
2,563,771	-		CSW01_12020	0.28	-2.4
2,563,776	-		CSW01_12020	0.29	-0.5
2,563,797	+		CSW01_12020	0.29	-2.2
2,563,913	+		CSW01_12020	0.32	+1.1
2,563,934	+		CSW01_12020	0.32	-4.1
2,563,977	-		CSW01_12020	0.33	-1.0
2,564,015	+		CSW01_12020	0.34	+1.0
2,564,048	+		CSW01_12020	0.35	+1.0
2,564,086	+		CSW01_12020	0.35	+1.1
2,564,139	+		CSW01_12020	0.36	+1.5
2,564,139	+		CSW01_12020	0.36	-0.3
2,564,147	-		CSW01_12020	0.37	-1.9
2,564,183	+		CSW01_12020	0.37	-1.9
2,564,183	+		CSW01_12020	0.37	-0.3
2,564,247	+		CSW01_12020	0.39	-2.6
2,564,284	+		CSW01_12020	0.40	-1.3
2,564,292	-		CSW01_12020	0.40	+1.0
2,564,309	+		CSW01_12020	0.40	+0.8
2,564,309	+		CSW01_12020	0.40	+0.2
2,564,418	+		CSW01_12020	0.43	-0.2
2,564,448	+		CSW01_12020	0.43	+0.8
2,564,483	-		CSW01_12020	0.44	+0.1
2,564,564	-		CSW01_12020	0.46	+1.3
2,564,655	+		CSW01_12020	0.48	+0.5
2,564,661	-		CSW01_12020	0.48	+0.5
2,564,697	+		CSW01_12020	0.49	+1.0
2,564,705	-		CSW01_12020	0.49	-0.0
2,564,731	+		CSW01_12020	0.49	-0.5
2,564,765	+		CSW01_12020	0.50	+1.1
2,564,777	+		CSW01_12020	0.50	+0.2
2,564,857	-		CSW01_12020	0.52	-0.9
2,564,941	-		CSW01_12020	0.54	-0.6
2,564,941	-		CSW01_12020	0.54	-2.3
2,564,961	+		CSW01_12020	0.54	-4.9
2,564,983	-		CSW01_12020	0.55	+0.8
2,565,070	+		CSW01_12020	0.57	-0.6
2,565,073	-		CSW01_12020	0.57	+0.3
2,565,110	+		CSW01_12020	0.58	-2.5
2,565,193	-		CSW01_12020	0.59	+2.0
2,565,198	-		CSW01_12020	0.60	+0.8
2,565,217	-		CSW01_12020	0.60	-1.3
2,565,252	-		CSW01_12020	0.61	-1.2
2,565,271	+		CSW01_12020	0.61	+2.2
2,565,273	-		CSW01_12020	0.61	-0.1
2,565,357	-		CSW01_12020	0.63	-1.5
2,565,369	+		CSW01_12020	0.63	-1.6
2,565,390	+		CSW01_12020	0.64	-2.2
2,565,398	-		CSW01_12020	0.64	+0.2
2,565,415	-		CSW01_12020	0.64	+0.5
2,565,432	+		CSW01_12020	0.65	+0.1
2,565,462	-		CSW01_12020	0.65	+0.8
2,565,489	-		CSW01_12020	0.66	-0.7
2,565,498	+		CSW01_12020	0.66	+2.5
2,565,508	+		CSW01_12020	0.66	+0.3
2,565,539	+		CSW01_12020	0.67	-2.6
2,565,540	-		CSW01_12020	0.67	+0.2
2,565,577	+		CSW01_12020	0.68	+1.4
2,565,591	-		CSW01_12020	0.68	+0.6
2,565,727	+		CSW01_12020	0.71	+1.3
2,565,750	+		CSW01_12020	0.72	-2.4
2,565,774	+		CSW01_12020	0.72	-3.8
2,565,819	+		CSW01_12020	0.73	+1.5
2,565,819	+		CSW01_12020	0.73	+0.7
2,565,820	+		CSW01_12020	0.73	-3.4
2,565,827	-		CSW01_12020	0.73	-1.3
2,565,827	-		CSW01_12020	0.73	-1.0
2,565,827	-		CSW01_12020	0.73	+2.2
2,565,897	+		CSW01_12020	0.75	+1.8
2,565,916	-		CSW01_12020	0.75	-1.8
2,565,936	+		CSW01_12020	0.76	+0.7
2,565,973	-		CSW01_12020	0.76	-0.2
2,565,973	-		CSW01_12020	0.76	+1.3
2,565,995	+		CSW01_12020	0.77	-1.4
2,566,227	+		CSW01_12020	0.82	-0.2
2,566,251	-		CSW01_12020	0.82	+1.1
2,566,274	+		CSW01_12020	0.83	-1.4
2,566,283	-		CSW01_12020	0.83	+1.7
2,566,286	+		CSW01_12020	0.83	-2.1
2,566,293	+		CSW01_12020	0.83	+1.1
2,566,293	+		CSW01_12020	0.83	-0.7
2,566,298	+		CSW01_12020	0.83	-2.0
2,566,303	+		CSW01_12020	0.84	+1.0
2,566,306	-		CSW01_12020	0.84	-1.5
2,566,306	-		CSW01_12020	0.84	+0.9
2,566,331	+		CSW01_12020	0.84	+0.6
2,566,373	-		CSW01_12020	0.85	+0.8
2,566,375	+		CSW01_12020	0.85	-0.5
2,566,375	+		CSW01_12020	0.85	+0.7
2,566,375	+		CSW01_12020	0.85	-0.7
2,566,383	-		CSW01_12020	0.85	-1.1
2,566,383	-		CSW01_12020	0.85	-3.8
2,566,383	-		CSW01_12020	0.85	+0.4
2,566,383	-		CSW01_12020	0.85	-4.5
2,566,383	-		CSW01_12020	0.85	+1.0
2,566,383	-		CSW01_12020	0.85	-1.6
2,566,446	+		CSW01_12020	0.87	-1.3
2,566,468	+		CSW01_12020	0.87	-2.7
2,566,502	-		CSW01_12020	0.88	-3.5
2,566,517	+		CSW01_12020	0.88	-0.7
2,566,519	+		CSW01_12020	0.88	+1.5
2,566,544	-		CSW01_12020	0.89	-0.0
2,566,589	-		CSW01_12020	0.90	+1.3
2,566,702	+				+0.4
2,566,718	+				+1.1
2,566,718	-				+0.7
2,566,744	+				-0.5
2,566,777	-				+0.1
2,566,786	-				-2.7
2,566,799	-				+0.7
2,566,839	+				+0.9
2,566,928	-				-1.1
2,566,928	-				+0.7
2,566,951	+				-3.0
2,566,951	+				+1.3
2,566,959	-				-0.1
2,566,959	-				+1.0
2,566,959	-				-0.8
2,566,959	-				+0.5
2,566,965	+				+0.1
2,566,965	+				+0.8
2,566,965	+				+0.0
2,566,973	-				-0.9
2,566,973	-				-1.9
2,566,973	-				-1.5
2,566,973	-				-1.9
2,566,973	-				-0.5
2,566,999	+				+0.5
2,567,014	+				+0.9
2,567,020	-				-2.1
2,567,022	-				-2.8
2,567,111	+				-1.3
2,567,185	+				+0.4
2,567,185	+				-1.5
2,567,185	+				-2.3
2,567,221	+		CSW01_12025	0.11	-3.1
2,567,222	-		CSW01_12025	0.11	+0.8
2,567,244	+		CSW01_12025	0.13	-1.3
2,567,244	+		CSW01_12025	0.13	-0.5
2,567,252	-		CSW01_12025	0.13	-2.1
2,567,269	+		CSW01_12025	0.14	-0.2
2,567,269	+		CSW01_12025	0.14	+0.8
2,567,310	-		CSW01_12025	0.17	-1.2
2,567,348	+		CSW01_12025	0.20	-4.8
2,567,348	+		CSW01_12025	0.20	-3.0
2,567,348	+		CSW01_12025	0.20	+1.0
2,567,348	+		CSW01_12025	0.20	-0.8
2,567,348	+		CSW01_12025	0.20	-0.3
2,567,348	+		CSW01_12025	0.20	-4.0
2,567,348	+		CSW01_12025	0.20	+0.6
2,567,348	+		CSW01_12025	0.20	-0.4
2,567,348	+		CSW01_12025	0.20	+1.4
2,567,356	-		CSW01_12025	0.20	+1.4
2,567,356	-		CSW01_12025	0.20	+0.2
2,567,356	-		CSW01_12025	0.20	+0.3
2,567,356	-		CSW01_12025	0.20	+0.5
2,567,366	-		CSW01_12025	0.21	+2.0
2,567,369	+		CSW01_12025	0.21	+0.3
2,567,457	-		CSW01_12025	0.27	-3.5
2,567,473	+		CSW01_12025	0.28	+0.2
2,567,524	-		CSW01_12025	0.32	-1.0
2,567,541	+		CSW01_12025	0.33	-2.1
2,567,544	-		CSW01_12025	0.33	+0.5
2,567,549	-		CSW01_12025	0.34	+0.7
2,567,549	-		CSW01_12025	0.34	-2.6
2,567,562	-		CSW01_12025	0.34	-3.3
2,567,633	+		CSW01_12025	0.39	-2.4
2,567,633	+		CSW01_12025	0.39	+0.5
2,567,639	-		CSW01_12025	0.40	-0.5
2,567,723	-		CSW01_12025	0.45	+1.7
2,567,742	-		CSW01_12025	0.47	+1.8
2,567,768	+		CSW01_12025	0.48	+0.6
2,567,776	-		CSW01_12025	0.49	+0.3
2,567,882	+		CSW01_12025	0.56	-4.0
2,567,957	+		CSW01_12025	0.61	+0.9
2,567,965	-		CSW01_12025	0.62	-0.1
2,568,030	+		CSW01_12025	0.66	+0.7
2,568,038	-		CSW01_12025	0.67	+0.6
2,568,038	-		CSW01_12025	0.67	+1.3