Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_09295

Experiment: ICP3_phage_0.41_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_09290 and CSW01_09295 are separated by 37 nucleotidesCSW01_09295 and CSW01_09300 overlap by 16 nucleotidesCSW01_09300 and CSW01_09305 are separated by 0 nucleotidesCSW01_09305 and CSW01_09310 are separated by 23 nucleotides CSW01_09290: CSW01_09290 - ATP-dependent DNA helicase DinG, at 1,993,034 to 1,995,109 _09290 CSW01_09295: CSW01_09295 - hypothetical protein, at 1,995,147 to 1,995,926 _09295 CSW01_09300: CSW01_09300 - prepilin peptidase, at 1,995,911 to 1,996,474 _09300 CSW01_09305: CSW01_09305 - primosomal protein, at 1,996,475 to 1,996,687 _09305 CSW01_09310: CSW01_09310 - methyl-accepting chemotaxis protein, at 1,996,711 to 1,998,831 _09310 Position (kb) 1995 1996Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1994.274 kb on + strand, within CSW01_09290at 1994.274 kb on + strand, within CSW01_09290at 1994.282 kb on - strand, within CSW01_09290at 1994.316 kb on + strand, within CSW01_09290at 1994.808 kb on + strand, within CSW01_09290at 1994.808 kb on + strand, within CSW01_09290at 1994.808 kb on + strand, within CSW01_09290at 1994.990 kb on - strandat 1995.098 kb on + strandat 1995.165 kb on - strandat 1995.165 kb on - strandat 1995.399 kb on + strand, within CSW01_09295at 1995.453 kb on - strand, within CSW01_09295at 1995.505 kb on - strand, within CSW01_09295at 1995.528 kb on + strand, within CSW01_09295at 1995.541 kb on + strand, within CSW01_09295at 1995.541 kb on + strand, within CSW01_09295at 1995.556 kb on - strand, within CSW01_09295at 1995.561 kb on - strand, within CSW01_09295at 1995.617 kb on - strand, within CSW01_09295at 1995.635 kb on + strand, within CSW01_09295at 1995.649 kb on + strand, within CSW01_09295at 1995.685 kb on + strand, within CSW01_09295at 1995.739 kb on + strand, within CSW01_09295at 1995.747 kb on - strand, within CSW01_09295at 1995.752 kb on + strand, within CSW01_09295at 1995.820 kb on - strand, within CSW01_09295at 1995.830 kb on - strand, within CSW01_09295at 1995.854 kb on - strandat 1995.854 kb on - strandat 1996.015 kb on - strand, within CSW01_09300at 1996.031 kb on + strand, within CSW01_09300at 1996.054 kb on + strand, within CSW01_09300at 1996.062 kb on - strand, within CSW01_09300at 1996.097 kb on + strand, within CSW01_09300at 1996.105 kb on - strand, within CSW01_09300at 1996.147 kb on + strand, within CSW01_09300at 1996.155 kb on - strand, within CSW01_09300at 1996.182 kb on - strand, within CSW01_09300at 1996.184 kb on - strand, within CSW01_09300at 1996.313 kb on + strand, within CSW01_09300at 1996.382 kb on + strand, within CSW01_09300at 1996.390 kb on - strand, within CSW01_09300at 1996.514 kb on - strand, within CSW01_09305at 1996.672 kb on + strandat 1996.738 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep2
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1,994,274 + CSW01_09290 0.60 +0.7
1,994,274 + CSW01_09290 0.60 -3.1
1,994,282 - CSW01_09290 0.60 +0.1
1,994,316 + CSW01_09290 0.62 -3.1
1,994,808 + CSW01_09290 0.85 -0.4
1,994,808 + CSW01_09290 0.85 -0.6
1,994,808 + CSW01_09290 0.85 -0.3
1,994,990 - -2.3
1,995,098 + -0.7
1,995,165 - -2.0
1,995,165 - -3.0
1,995,399 + CSW01_09295 0.32 +1.2
1,995,453 - CSW01_09295 0.39 +0.7
1,995,505 - CSW01_09295 0.46 -0.3
1,995,528 + CSW01_09295 0.49 +1.2
1,995,541 + CSW01_09295 0.51 -2.5
1,995,541 + CSW01_09295 0.51 +0.5
1,995,556 - CSW01_09295 0.52 +1.8
1,995,561 - CSW01_09295 0.53 -0.1
1,995,617 - CSW01_09295 0.60 +0.7
1,995,635 + CSW01_09295 0.63 +0.4
1,995,649 + CSW01_09295 0.64 +1.6
1,995,685 + CSW01_09295 0.69 -0.6
1,995,739 + CSW01_09295 0.76 +1.6
1,995,747 - CSW01_09295 0.77 -0.4
1,995,752 + CSW01_09295 0.78 +0.1
1,995,820 - CSW01_09295 0.86 +0.3
1,995,830 - CSW01_09295 0.88 +1.0
1,995,854 - -2.1
1,995,854 - -3.3
1,996,015 - CSW01_09300 0.18 -0.2
1,996,031 + CSW01_09300 0.21 -0.3
1,996,054 + CSW01_09300 0.25 +0.9
1,996,062 - CSW01_09300 0.27 -1.8
1,996,097 + CSW01_09300 0.33 -0.5
1,996,105 - CSW01_09300 0.34 -2.2
1,996,147 + CSW01_09300 0.42 -0.8
1,996,155 - CSW01_09300 0.43 +0.8
1,996,182 - CSW01_09300 0.48 +0.4
1,996,184 - CSW01_09300 0.48 +0.8
1,996,313 + CSW01_09300 0.71 +0.4
1,996,382 + CSW01_09300 0.84 -0.1
1,996,390 - CSW01_09300 0.85 -3.2
1,996,514 - CSW01_09305 0.18 -3.1
1,996,672 + -2.7
1,996,738 + +0.9

Or see this region's nucleotide sequence