Experiment: ICP3_phage_0.41_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_09065 and CSW01_09070 are separated by 34 nucleotides CSW01_09070 and CSW01_09075 are separated by 291 nucleotides
CSW01_09065: CSW01_09065 - GTPase, at 1,948,480 to 1,949,466
_09065
CSW01_09070: CSW01_09070 - transposase, at 1,949,501 to 1,950,141
_09070
CSW01_09075: CSW01_09075 - hypothetical protein, at 1,950,433 to 1,951,278
_09075
Position (kb) 1949
1950
1951 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 1948.599 kb on - strand, within CSW01_09065 at 1948.621 kb on - strand, within CSW01_09065 at 1948.698 kb on + strand, within CSW01_09065 at 1948.716 kb on - strand, within CSW01_09065 at 1948.716 kb on - strand, within CSW01_09065 at 1948.716 kb on - strand, within CSW01_09065 at 1948.748 kb on + strand, within CSW01_09065 at 1948.748 kb on + strand, within CSW01_09065 at 1948.748 kb on + strand, within CSW01_09065 at 1948.748 kb on + strand, within CSW01_09065 at 1948.748 kb on + strand, within CSW01_09065 at 1948.756 kb on - strand, within CSW01_09065 at 1948.872 kb on - strand, within CSW01_09065 at 1948.902 kb on - strand, within CSW01_09065 at 1948.966 kb on - strand, within CSW01_09065 at 1949.037 kb on + strand, within CSW01_09065 at 1949.045 kb on - strand, within CSW01_09065 at 1949.045 kb on - strand, within CSW01_09065 at 1949.064 kb on + strand, within CSW01_09065 at 1949.086 kb on - strand, within CSW01_09065 at 1949.131 kb on + strand, within CSW01_09065 at 1949.138 kb on + strand, within CSW01_09065 at 1949.138 kb on - strand, within CSW01_09065 at 1949.138 kb on - strand, within CSW01_09065 at 1949.179 kb on - strand, within CSW01_09065 at 1949.181 kb on + strand, within CSW01_09065 at 1949.181 kb on + strand, within CSW01_09065 at 1949.189 kb on - strand, within CSW01_09065 at 1949.227 kb on - strand, within CSW01_09065 at 1949.251 kb on - strand, within CSW01_09065 at 1949.303 kb on + strand, within CSW01_09065 at 1949.303 kb on + strand, within CSW01_09065 at 1949.303 kb on + strand, within CSW01_09065 at 1949.303 kb on + strand, within CSW01_09065 at 1949.303 kb on + strand, within CSW01_09065 at 1949.303 kb on + strand, within CSW01_09065 at 1949.303 kb on + strand, within CSW01_09065 at 1949.303 kb on + strand, within CSW01_09065 at 1949.309 kb on + strand, within CSW01_09065 at 1949.407 kb on + strand at 1949.407 kb on + strand at 1949.407 kb on + strand at 1949.407 kb on + strand at 1949.407 kb on + strand at 1949.407 kb on + strand at 1949.407 kb on + strand at 1949.407 kb on + strand at 1949.407 kb on + strand at 1949.407 kb on + strand at 1949.407 kb on + strand at 1949.407 kb on + strand at 1949.408 kb on - strand at 1949.415 kb on - strand at 1949.415 kb on - strand at 1949.415 kb on - strand at 1949.415 kb on - strand at 1949.422 kb on - strand at 1949.599 kb on - strand, within CSW01_09070 at 1949.646 kb on + strand, within CSW01_09070 at 1949.656 kb on + strand, within CSW01_09070 at 1949.661 kb on + strand, within CSW01_09070 at 1949.661 kb on + strand, within CSW01_09070 at 1949.671 kb on - strand, within CSW01_09070 at 1949.688 kb on - strand, within CSW01_09070 at 1949.688 kb on - strand, within CSW01_09070 at 1949.702 kb on - strand, within CSW01_09070 at 1949.709 kb on + strand, within CSW01_09070 at 1949.717 kb on - strand, within CSW01_09070 at 1949.733 kb on + strand, within CSW01_09070 at 1949.809 kb on + strand, within CSW01_09070 at 1949.817 kb on - strand, within CSW01_09070 at 1949.822 kb on - strand, within CSW01_09070 at 1949.822 kb on - strand, within CSW01_09070 at 1949.827 kb on + strand, within CSW01_09070 at 1949.835 kb on - strand, within CSW01_09070 at 1949.862 kb on + strand, within CSW01_09070 at 1949.870 kb on - strand, within CSW01_09070 at 1949.876 kb on - strand, within CSW01_09070 at 1949.943 kb on - strand, within CSW01_09070 at 1949.945 kb on + strand, within CSW01_09070 at 1949.953 kb on - strand, within CSW01_09070 at 1949.967 kb on + strand, within CSW01_09070 at 1949.992 kb on + strand, within CSW01_09070 at 1949.998 kb on - strand, within CSW01_09070 at 1950.148 kb on + strand at 1950.154 kb on + strand at 1950.156 kb on - strand at 1950.161 kb on - strand at 1950.161 kb on - strand at 1950.161 kb on - strand at 1950.189 kb on + strand at 1950.210 kb on - strand at 1950.237 kb on + strand at 1950.245 kb on - strand at 1950.249 kb on + strand at 1950.269 kb on + strand at 1950.274 kb on + strand at 1950.274 kb on + strand at 1950.274 kb on + strand at 1950.274 kb on - strand at 1950.282 kb on - strand at 1950.282 kb on - strand at 1950.282 kb on - strand at 1950.282 kb on - strand at 1950.282 kb on - strand at 1950.282 kb on - strand at 1950.300 kb on - strand at 1950.302 kb on - strand at 1950.304 kb on - strand at 1950.306 kb on + strand at 1950.314 kb on - strand at 1950.317 kb on + strand at 1950.323 kb on + strand at 1950.329 kb on + strand at 1950.329 kb on + strand at 1950.329 kb on + strand at 1950.329 kb on + strand at 1950.329 kb on + strand at 1950.329 kb on + strand at 1950.329 kb on + strand at 1950.329 kb on + strand at 1950.329 kb on + strand at 1950.329 kb on + strand at 1950.329 kb on + strand at 1950.329 kb on + strand at 1950.329 kb on + strand at 1950.329 kb on + strand at 1950.329 kb on + strand at 1950.329 kb on + strand at 1950.329 kb on + strand at 1950.329 kb on + strand at 1950.329 kb on + strand at 1950.329 kb on + strand at 1950.329 kb on + strand at 1950.329 kb on + strand at 1950.329 kb on + strand at 1950.329 kb on + strand at 1950.329 kb on + strand at 1950.329 kb on + strand at 1950.329 kb on + strand at 1950.329 kb on + strand at 1950.331 kb on - strand at 1950.335 kb on - strand at 1950.337 kb on - strand at 1950.337 kb on - strand at 1950.337 kb on - strand at 1950.337 kb on - strand at 1950.337 kb on - strand at 1950.337 kb on - strand at 1950.337 kb on - strand at 1950.337 kb on - strand at 1950.337 kb on - strand at 1950.337 kb on - strand at 1950.337 kb on - strand at 1950.337 kb on - strand at 1950.337 kb on - strand at 1950.337 kb on - strand at 1950.337 kb on - strand at 1950.337 kb on - strand at 1950.337 kb on - strand at 1950.337 kb on - strand at 1950.337 kb on - strand at 1950.337 kb on - strand at 1950.337 kb on - strand at 1950.337 kb on - strand at 1950.337 kb on - strand at 1950.337 kb on - strand at 1950.337 kb on - strand at 1950.339 kb on + strand at 1950.339 kb on + strand at 1950.339 kb on + strand at 1950.339 kb on + strand at 1950.339 kb on + strand at 1950.339 kb on + strand at 1950.339 kb on + strand at 1950.339 kb on + strand at 1950.339 kb on + strand at 1950.339 kb on + strand at 1950.339 kb on + strand at 1950.339 kb on + strand at 1950.339 kb on + strand at 1950.339 kb on + strand at 1950.339 kb on + strand at 1950.339 kb on + strand at 1950.339 kb on + strand at 1950.339 kb on + strand at 1950.339 kb on + strand at 1950.339 kb on + strand at 1950.339 kb on + strand at 1950.339 kb on + strand at 1950.339 kb on + strand at 1950.339 kb on + strand at 1950.339 kb on + strand at 1950.339 kb on + strand at 1950.339 kb on + strand at 1950.339 kb on + strand at 1950.339 kb on + strand at 1950.339 kb on + strand at 1950.339 kb on + strand at 1950.339 kb on + strand at 1950.339 kb on + strand at 1950.339 kb on - strand at 1950.347 kb on - strand at 1950.347 kb on - strand at 1950.347 kb on - strand at 1950.347 kb on - strand at 1950.347 kb on - strand at 1950.347 kb on - strand at 1950.347 kb on - strand at 1950.347 kb on - strand at 1950.347 kb on - strand at 1950.347 kb on - strand at 1950.347 kb on - strand at 1950.347 kb on - strand at 1950.347 kb on - strand at 1950.347 kb on - strand at 1950.347 kb on - strand at 1950.347 kb on - strand at 1950.347 kb on - strand at 1950.347 kb on - strand at 1950.347 kb on - strand at 1950.347 kb on - strand at 1950.347 kb on - strand at 1950.347 kb on - strand at 1950.347 kb on - strand at 1950.347 kb on - strand at 1950.347 kb on - strand at 1950.375 kb on + strand at 1950.383 kb on - strand at 1950.383 kb on - strand at 1950.408 kb on + strand at 1950.484 kb on + strand at 1950.484 kb on + strand at 1950.535 kb on + strand, within CSW01_09075 at 1950.535 kb on + strand, within CSW01_09075 at 1950.535 kb on + strand, within CSW01_09075 at 1950.535 kb on + strand, within CSW01_09075 at 1950.535 kb on + strand, within CSW01_09075 at 1950.535 kb on + strand, within CSW01_09075 at 1950.543 kb on - strand, within CSW01_09075 at 1950.543 kb on - strand, within CSW01_09075 at 1950.545 kb on + strand, within CSW01_09075 at 1950.545 kb on + strand, within CSW01_09075 at 1950.556 kb on - strand, within CSW01_09075 at 1950.558 kb on + strand, within CSW01_09075 at 1950.605 kb on + strand, within CSW01_09075 at 1950.612 kb on + strand, within CSW01_09075 at 1950.622 kb on + strand, within CSW01_09075 at 1950.630 kb on - strand, within CSW01_09075 at 1950.630 kb on - strand, within CSW01_09075 at 1950.630 kb on - strand, within CSW01_09075 at 1950.733 kb on - strand, within CSW01_09075 at 1950.733 kb on - strand, within CSW01_09075 at 1950.733 kb on - strand, within CSW01_09075 at 1950.748 kb on - strand, within CSW01_09075 at 1950.829 kb on + strand, within CSW01_09075 at 1950.860 kb on + strand, within CSW01_09075 at 1950.860 kb on + strand, within CSW01_09075 at 1950.871 kb on + strand, within CSW01_09075 at 1950.879 kb on - strand, within CSW01_09075 at 1950.880 kb on - strand, within CSW01_09075 at 1950.890 kb on - strand, within CSW01_09075 at 1950.984 kb on - strand, within CSW01_09075 at 1950.995 kb on - strand, within CSW01_09075
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep2 remove 1,948,599 - CSW01_09065 0.12 -2.4 1,948,621 - CSW01_09065 0.14 +1.5 1,948,698 + CSW01_09065 0.22 -2.2 1,948,716 - CSW01_09065 0.24 +0.2 1,948,716 - CSW01_09065 0.24 +0.1 1,948,716 - CSW01_09065 0.24 -1.5 1,948,748 + CSW01_09065 0.27 +0.2 1,948,748 + CSW01_09065 0.27 +0.9 1,948,748 + CSW01_09065 0.27 -0.7 1,948,748 + CSW01_09065 0.27 -0.6 1,948,748 + CSW01_09065 0.27 +0.8 1,948,756 - CSW01_09065 0.28 +0.4 1,948,872 - CSW01_09065 0.40 -2.5 1,948,902 - CSW01_09065 0.43 +1.8 1,948,966 - CSW01_09065 0.49 +0.5 1,949,037 + CSW01_09065 0.56 -1.0 1,949,045 - CSW01_09065 0.57 -0.3 1,949,045 - CSW01_09065 0.57 +0.7 1,949,064 + CSW01_09065 0.59 +0.1 1,949,086 - CSW01_09065 0.61 -0.3 1,949,131 + CSW01_09065 0.66 +0.0 1,949,138 + CSW01_09065 0.67 -0.3 1,949,138 - CSW01_09065 0.67 +0.4 1,949,138 - CSW01_09065 0.67 -2.6 1,949,179 - CSW01_09065 0.71 +1.2 1,949,181 + CSW01_09065 0.71 -1.8 1,949,181 + CSW01_09065 0.71 -0.0 1,949,189 - CSW01_09065 0.72 -2.8 1,949,227 - CSW01_09065 0.76 -0.2 1,949,251 - CSW01_09065 0.78 -2.4 1,949,303 + CSW01_09065 0.83 +0.6 1,949,303 + CSW01_09065 0.83 +0.6 1,949,303 + CSW01_09065 0.83 +0.3 1,949,303 + CSW01_09065 0.83 +0.7 1,949,303 + CSW01_09065 0.83 +0.2 1,949,303 + CSW01_09065 0.83 -0.1 1,949,303 + CSW01_09065 0.83 -1.1 1,949,303 + CSW01_09065 0.83 +0.1 1,949,309 + CSW01_09065 0.84 -0.9 1,949,407 + -2.9 1,949,407 + +0.0 1,949,407 + +1.0 1,949,407 + -0.7 1,949,407 + +0.7 1,949,407 + +1.3 1,949,407 + +0.3 1,949,407 + -0.3 1,949,407 + +1.4 1,949,407 + -0.0 1,949,407 + -2.8 1,949,407 + -0.6 1,949,408 - +0.3 1,949,415 - -0.4 1,949,415 - +0.2 1,949,415 - +0.4 1,949,415 - -0.4 1,949,422 - +2.5 1,949,599 - CSW01_09070 0.15 -2.2 1,949,646 + CSW01_09070 0.23 +1.0 1,949,656 + CSW01_09070 0.24 +0.1 1,949,661 + CSW01_09070 0.25 -0.3 1,949,661 + CSW01_09070 0.25 +0.1 1,949,671 - CSW01_09070 0.27 -1.9 1,949,688 - CSW01_09070 0.29 -0.2 1,949,688 - CSW01_09070 0.29 -0.1 1,949,702 - CSW01_09070 0.31 -2.5 1,949,709 + CSW01_09070 0.32 -3.3 1,949,717 - CSW01_09070 0.34 -0.2 1,949,733 + CSW01_09070 0.36 -0.5 1,949,809 + CSW01_09070 0.48 -1.2 1,949,817 - CSW01_09070 0.49 -3.4 1,949,822 - CSW01_09070 0.50 -0.4 1,949,822 - CSW01_09070 0.50 +0.5 1,949,827 + CSW01_09070 0.51 -0.1 1,949,835 - CSW01_09070 0.52 -3.9 1,949,862 + CSW01_09070 0.56 +0.2 1,949,870 - CSW01_09070 0.58 -0.9 1,949,876 - CSW01_09070 0.59 -0.0 1,949,943 - CSW01_09070 0.69 -1.6 1,949,945 + CSW01_09070 0.69 -0.6 1,949,953 - CSW01_09070 0.71 -0.2 1,949,967 + CSW01_09070 0.73 -2.3 1,949,992 + CSW01_09070 0.77 -1.2 1,949,998 - CSW01_09070 0.78 -0.9 1,950,148 + -0.6 1,950,154 + -0.8 1,950,156 - -0.4 1,950,161 - -0.1 1,950,161 - -0.3 1,950,161 - -0.1 1,950,189 + -0.4 1,950,210 - -2.7 1,950,237 + -3.1 1,950,245 - +0.9 1,950,249 + +0.3 1,950,269 + -3.0 1,950,274 + -3.2 1,950,274 + -2.3 1,950,274 + -1.6 1,950,274 - -1.3 1,950,282 - -0.5 1,950,282 - +0.1 1,950,282 - +0.9 1,950,282 - -2.1 1,950,282 - +0.6 1,950,282 - +0.1 1,950,300 - -0.5 1,950,302 - -2.4 1,950,304 - +0.8 1,950,306 + -0.3 1,950,314 - +0.9 1,950,317 + +0.8 1,950,323 + -2.8 1,950,329 + -2.2 1,950,329 + -0.4 1,950,329 + -2.5 1,950,329 + -2.6 1,950,329 + -3.2 1,950,329 + +0.7 1,950,329 + +0.3 1,950,329 + +0.1 1,950,329 + +0.1 1,950,329 + +1.1 1,950,329 + -2.5 1,950,329 + -0.7 1,950,329 + -0.2 1,950,329 + +0.4 1,950,329 + -0.6 1,950,329 + +0.2 1,950,329 + -3.3 1,950,329 + +0.8 1,950,329 + +1.4 1,950,329 + +1.2 1,950,329 + +0.8 1,950,329 + +1.3 1,950,329 + -3.4 1,950,329 + -0.2 1,950,329 + +0.0 1,950,329 + +0.5 1,950,329 + -2.9 1,950,329 + +0.3 1,950,331 - +0.4 1,950,335 - +0.5 1,950,337 - +0.5 1,950,337 - -0.5 1,950,337 - -3.5 1,950,337 - -0.8 1,950,337 - +0.4 1,950,337 - -1.4 1,950,337 - +0.1 1,950,337 - -0.5 1,950,337 - +1.0 1,950,337 - -2.2 1,950,337 - -1.7 1,950,337 - +0.6 1,950,337 - -0.8 1,950,337 - -1.0 1,950,337 - -1.0 1,950,337 - -2.0 1,950,337 - -2.0 1,950,337 - +0.6 1,950,337 - -0.2 1,950,337 - +1.8 1,950,337 - +0.0 1,950,337 - -1.4 1,950,337 - -1.6 1,950,337 - -2.4 1,950,337 - +2.1 1,950,339 + +0.1 1,950,339 + +0.2 1,950,339 + +0.1 1,950,339 + -0.0 1,950,339 + +0.5 1,950,339 + +0.0 1,950,339 + -3.3 1,950,339 + +1.5 1,950,339 + +1.4 1,950,339 + +0.4 1,950,339 + -0.7 1,950,339 + +0.2 1,950,339 + -2.1 1,950,339 + -3.7 1,950,339 + +0.4 1,950,339 + -1.6 1,950,339 + +0.9 1,950,339 + -3.4 1,950,339 + -0.9 1,950,339 + +1.2 1,950,339 + -0.0 1,950,339 + +0.5 1,950,339 + -0.6 1,950,339 + +0.4 1,950,339 + +0.4 1,950,339 + -1.0 1,950,339 + -0.1 1,950,339 + +0.1 1,950,339 + +0.5 1,950,339 + +0.9 1,950,339 + -2.3 1,950,339 + +0.7 1,950,339 + +1.8 1,950,339 - +0.9 1,950,347 - -4.0 1,950,347 - -2.8 1,950,347 - -0.5 1,950,347 - -2.9 1,950,347 - -2.8 1,950,347 - +0.8 1,950,347 - -0.0 1,950,347 - -0.3 1,950,347 - -1.0 1,950,347 - -0.8 1,950,347 - -2.1 1,950,347 - -0.8 1,950,347 - -0.2 1,950,347 - -0.8 1,950,347 - -0.8 1,950,347 - -0.7 1,950,347 - +1.1 1,950,347 - +0.2 1,950,347 - -1.4 1,950,347 - -0.2 1,950,347 - -2.2 1,950,347 - -0.8 1,950,347 - +1.2 1,950,347 - -0.1 1,950,347 - -3.7 1,950,375 + -0.8 1,950,383 - -1.6 1,950,383 - -3.1 1,950,408 + -3.6 1,950,484 + +0.8 1,950,484 + -3.9 1,950,535 + CSW01_09075 0.12 -3.9 1,950,535 + CSW01_09075 0.12 +0.7 1,950,535 + CSW01_09075 0.12 -1.7 1,950,535 + CSW01_09075 0.12 -0.4 1,950,535 + CSW01_09075 0.12 -1.4 1,950,535 + CSW01_09075 0.12 -0.7 1,950,543 - CSW01_09075 0.13 -0.4 1,950,543 - CSW01_09075 0.13 -0.4 1,950,545 + CSW01_09075 0.13 -0.4 1,950,545 + CSW01_09075 0.13 +0.7 1,950,556 - CSW01_09075 0.15 -2.6 1,950,558 + CSW01_09075 0.15 -0.7 1,950,605 + CSW01_09075 0.20 -0.8 1,950,612 + CSW01_09075 0.21 +0.7 1,950,622 + CSW01_09075 0.22 -0.8 1,950,630 - CSW01_09075 0.23 -1.7 1,950,630 - CSW01_09075 0.23 -0.6 1,950,630 - CSW01_09075 0.23 -1.2 1,950,733 - CSW01_09075 0.35 -0.5 1,950,733 - CSW01_09075 0.35 -0.9 1,950,733 - CSW01_09075 0.35 -0.9 1,950,748 - CSW01_09075 0.37 -1.0 1,950,829 + CSW01_09075 0.47 -0.8 1,950,860 + CSW01_09075 0.50 +0.3 1,950,860 + CSW01_09075 0.50 -2.2 1,950,871 + CSW01_09075 0.52 -3.6 1,950,879 - CSW01_09075 0.53 -0.3 1,950,880 - CSW01_09075 0.53 -0.6 1,950,890 - CSW01_09075 0.54 +0.2 1,950,984 - CSW01_09075 0.65 +0.4 1,950,995 - CSW01_09075 0.66 -3.1
Or see this region's nucleotide sequence