Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_08730

Experiment: ICP3_phage_0.41_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_08720 and CSW01_08725 are separated by 83 nucleotidesCSW01_08725 and CSW01_08730 are separated by 35 nucleotidesCSW01_08730 and CSW01_08735 are separated by 103 nucleotides CSW01_08720: CSW01_08720 - arginyltransferase, at 1,871,569 to 1,872,270 _08720 CSW01_08725: CSW01_08725 - translation initiation factor IF-1, at 1,872,354 to 1,872,572 _08725 CSW01_08730: CSW01_08730 - phage-shock protein, at 1,872,608 to 1,872,772 _08730 CSW01_08735: CSW01_08735 - enoyl-[acyl-carrier-protein] reductase FabV, at 1,872,876 to 1,874,081 _08735 Position (kb) 1872 1873Strain fitness (log2 ratio) -3 -2 -1 0 1at 1871.691 kb on - strand, within CSW01_08720at 1872.055 kb on + strand, within CSW01_08720at 1872.213 kb on - strandat 1872.213 kb on - strandat 1872.265 kb on + strandat 1872.676 kb on + strand, within CSW01_08730at 1872.700 kb on + strand, within CSW01_08730at 1872.708 kb on - strand, within CSW01_08730at 1872.814 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep2
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1,871,691 - CSW01_08720 0.17 +0.3
1,872,055 + CSW01_08720 0.69 -0.1
1,872,213 - -0.3
1,872,213 - +1.0
1,872,265 + -2.2
1,872,676 + CSW01_08730 0.41 -0.6
1,872,700 + CSW01_08730 0.56 -0.8
1,872,708 - CSW01_08730 0.61 -2.8
1,872,814 - +0.2

Or see this region's nucleotide sequence