Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04975

Experiment: ICP3_phage_0.41_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04965 and CSW01_04970 are separated by 76 nucleotidesCSW01_04970 and CSW01_04975 are separated by 60 nucleotidesCSW01_04975 and CSW01_04980 are separated by 43 nucleotidesCSW01_04980 and CSW01_04985 are separated by 7 nucleotides CSW01_04965: CSW01_04965 - chitoporin, at 1,036,631 to 1,037,680 _04965 CSW01_04970: CSW01_04970 - hypothetical protein, at 1,037,757 to 1,038,572 _04970 CSW01_04975: CSW01_04975 - transcriptional regulator, at 1,038,633 to 1,039,052 _04975 CSW01_04980: CSW01_04980 - NfeD family protein, at 1,039,096 to 1,039,545 _04980 CSW01_04985: CSW01_04985 - paraslipin, at 1,039,553 to 1,040,473 _04985 Position (kb) 1038 1039 1040Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1037.660 kb on + strandat 1037.668 kb on - strandat 1037.820 kb on + strandat 1037.820 kb on + strandat 1037.828 kb on - strandat 1037.828 kb on - strandat 1037.828 kb on - strandat 1037.828 kb on - strandat 1037.830 kb on + strandat 1037.830 kb on + strandat 1037.830 kb on + strandat 1037.830 kb on + strandat 1037.830 kb on + strandat 1037.830 kb on + strandat 1037.838 kb on - strandat 1037.838 kb on - strandat 1037.840 kb on + strand, within CSW01_04970at 1037.840 kb on + strand, within CSW01_04970at 1037.846 kb on - strand, within CSW01_04970at 1037.848 kb on - strand, within CSW01_04970at 1037.848 kb on - strand, within CSW01_04970at 1037.852 kb on + strand, within CSW01_04970at 1037.908 kb on - strand, within CSW01_04970at 1037.952 kb on + strand, within CSW01_04970at 1037.960 kb on - strand, within CSW01_04970at 1037.960 kb on - strand, within CSW01_04970at 1037.960 kb on - strand, within CSW01_04970at 1037.960 kb on - strand, within CSW01_04970at 1038.050 kb on + strand, within CSW01_04970at 1038.113 kb on + strand, within CSW01_04970at 1038.113 kb on + strand, within CSW01_04970at 1038.113 kb on + strand, within CSW01_04970at 1038.113 kb on + strand, within CSW01_04970at 1038.118 kb on + strand, within CSW01_04970at 1038.118 kb on + strand, within CSW01_04970at 1038.121 kb on - strand, within CSW01_04970at 1038.126 kb on - strand, within CSW01_04970at 1038.126 kb on - strand, within CSW01_04970at 1038.136 kb on - strand, within CSW01_04970at 1038.145 kb on + strand, within CSW01_04970at 1038.202 kb on + strand, within CSW01_04970at 1038.202 kb on + strand, within CSW01_04970at 1038.210 kb on - strand, within CSW01_04970at 1038.210 kb on - strand, within CSW01_04970at 1038.212 kb on + strand, within CSW01_04970at 1038.220 kb on - strand, within CSW01_04970at 1038.220 kb on - strand, within CSW01_04970at 1038.266 kb on - strand, within CSW01_04970at 1038.339 kb on + strand, within CSW01_04970at 1038.358 kb on + strand, within CSW01_04970at 1038.358 kb on + strand, within CSW01_04970at 1038.411 kb on - strand, within CSW01_04970at 1038.411 kb on - strand, within CSW01_04970at 1038.463 kb on + strand, within CSW01_04970at 1038.464 kb on + strand, within CSW01_04970at 1038.464 kb on + strand, within CSW01_04970at 1038.464 kb on + strand, within CSW01_04970at 1038.472 kb on - strand, within CSW01_04970at 1038.472 kb on - strand, within CSW01_04970at 1038.472 kb on - strand, within CSW01_04970at 1038.472 kb on - strand, within CSW01_04970at 1038.587 kb on + strandat 1038.587 kb on + strandat 1038.587 kb on + strandat 1038.587 kb on + strandat 1038.587 kb on + strandat 1038.594 kb on + strandat 1038.678 kb on - strand, within CSW01_04975at 1038.751 kb on - strand, within CSW01_04975at 1038.816 kb on - strand, within CSW01_04975at 1038.818 kb on + strand, within CSW01_04975at 1038.818 kb on + strand, within CSW01_04975at 1038.818 kb on + strand, within CSW01_04975at 1038.818 kb on + strand, within CSW01_04975at 1038.818 kb on + strand, within CSW01_04975at 1038.818 kb on + strand, within CSW01_04975at 1038.818 kb on + strand, within CSW01_04975at 1038.818 kb on + strand, within CSW01_04975at 1038.818 kb on + strand, within CSW01_04975at 1038.826 kb on - strand, within CSW01_04975at 1038.826 kb on - strand, within CSW01_04975at 1038.826 kb on - strand, within CSW01_04975at 1038.826 kb on - strand, within CSW01_04975at 1038.826 kb on - strand, within CSW01_04975at 1038.826 kb on - strand, within CSW01_04975at 1038.826 kb on - strand, within CSW01_04975at 1038.826 kb on - strand, within CSW01_04975at 1038.826 kb on - strand, within CSW01_04975at 1038.826 kb on - strand, within CSW01_04975at 1038.826 kb on - strand, within CSW01_04975at 1038.826 kb on - strand, within CSW01_04975at 1038.829 kb on + strand, within CSW01_04975at 1038.854 kb on - strand, within CSW01_04975at 1038.870 kb on - strand, within CSW01_04975at 1038.983 kb on - strand, within CSW01_04975at 1038.983 kb on - strand, within CSW01_04975at 1039.015 kb on - strandat 1039.037 kb on + strandat 1039.167 kb on + strand, within CSW01_04980at 1039.184 kb on + strand, within CSW01_04980at 1039.184 kb on + strand, within CSW01_04980at 1039.184 kb on + strand, within CSW01_04980at 1039.192 kb on - strand, within CSW01_04980at 1039.192 kb on - strand, within CSW01_04980at 1039.192 kb on - strand, within CSW01_04980at 1039.192 kb on - strand, within CSW01_04980at 1039.192 kb on - strand, within CSW01_04980at 1039.192 kb on - strand, within CSW01_04980at 1039.192 kb on - strand, within CSW01_04980at 1039.192 kb on - strand, within CSW01_04980at 1039.192 kb on - strand, within CSW01_04980at 1039.192 kb on - strand, within CSW01_04980at 1039.192 kb on - strand, within CSW01_04980at 1039.193 kb on + strand, within CSW01_04980at 1039.239 kb on - strand, within CSW01_04980at 1039.278 kb on + strand, within CSW01_04980at 1039.278 kb on + strand, within CSW01_04980at 1039.286 kb on - strand, within CSW01_04980at 1039.313 kb on + strand, within CSW01_04980at 1039.463 kb on + strand, within CSW01_04980at 1039.481 kb on - strand, within CSW01_04980at 1039.495 kb on + strand, within CSW01_04980at 1039.503 kb on - strandat 1039.555 kb on + strandat 1039.688 kb on + strand, within CSW01_04985at 1039.688 kb on + strand, within CSW01_04985at 1039.696 kb on - strand, within CSW01_04985at 1039.701 kb on - strand, within CSW01_04985at 1039.725 kb on + strand, within CSW01_04985at 1039.747 kb on + strand, within CSW01_04985at 1039.755 kb on - strand, within CSW01_04985at 1039.929 kb on + strand, within CSW01_04985at 1040.002 kb on + strand, within CSW01_04985at 1040.002 kb on + strand, within CSW01_04985at 1040.010 kb on - strand, within CSW01_04985at 1040.010 kb on - strand, within CSW01_04985at 1040.018 kb on - strand, within CSW01_04985

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep2
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1,037,660 + -1.8
1,037,668 - -3.5
1,037,820 + +1.2
1,037,820 + -0.3
1,037,828 - +1.0
1,037,828 - -1.4
1,037,828 - -0.3
1,037,828 - +0.7
1,037,830 + +0.2
1,037,830 + -0.3
1,037,830 + +1.9
1,037,830 + +2.2
1,037,830 + +1.6
1,037,830 + -0.6
1,037,838 - +0.4
1,037,838 - +0.6
1,037,840 + CSW01_04970 0.10 -2.6
1,037,840 + CSW01_04970 0.10 -0.9
1,037,846 - CSW01_04970 0.11 -3.1
1,037,848 - CSW01_04970 0.11 +1.1
1,037,848 - CSW01_04970 0.11 -2.4
1,037,852 + CSW01_04970 0.12 -1.7
1,037,908 - CSW01_04970 0.19 -2.4
1,037,952 + CSW01_04970 0.24 +0.5
1,037,960 - CSW01_04970 0.25 -0.8
1,037,960 - CSW01_04970 0.25 +0.7
1,037,960 - CSW01_04970 0.25 +1.4
1,037,960 - CSW01_04970 0.25 -3.3
1,038,050 + CSW01_04970 0.36 -2.0
1,038,113 + CSW01_04970 0.44 -3.4
1,038,113 + CSW01_04970 0.44 +1.1
1,038,113 + CSW01_04970 0.44 +0.3
1,038,113 + CSW01_04970 0.44 +0.7
1,038,118 + CSW01_04970 0.44 +0.1
1,038,118 + CSW01_04970 0.44 +1.1
1,038,121 - CSW01_04970 0.45 +0.9
1,038,126 - CSW01_04970 0.45 +1.6
1,038,126 - CSW01_04970 0.45 -0.1
1,038,136 - CSW01_04970 0.46 -0.4
1,038,145 + CSW01_04970 0.48 -1.9
1,038,202 + CSW01_04970 0.55 +0.4
1,038,202 + CSW01_04970 0.55 -0.6
1,038,210 - CSW01_04970 0.56 +0.9
1,038,210 - CSW01_04970 0.56 -0.9
1,038,212 + CSW01_04970 0.56 -0.3
1,038,220 - CSW01_04970 0.57 -0.3
1,038,220 - CSW01_04970 0.57 -0.0
1,038,266 - CSW01_04970 0.62 +1.9
1,038,339 + CSW01_04970 0.71 -0.1
1,038,358 + CSW01_04970 0.74 -1.1
1,038,358 + CSW01_04970 0.74 +0.9
1,038,411 - CSW01_04970 0.80 +1.5
1,038,411 - CSW01_04970 0.80 +1.1
1,038,463 + CSW01_04970 0.87 -1.6
1,038,464 + CSW01_04970 0.87 -0.6
1,038,464 + CSW01_04970 0.87 +0.2
1,038,464 + CSW01_04970 0.87 +0.9
1,038,472 - CSW01_04970 0.88 +0.4
1,038,472 - CSW01_04970 0.88 -0.3
1,038,472 - CSW01_04970 0.88 -0.6
1,038,472 - CSW01_04970 0.88 -0.3
1,038,587 + -1.1
1,038,587 + +0.6
1,038,587 + -0.3
1,038,587 + -3.0
1,038,587 + +0.7
1,038,594 + -0.9
1,038,678 - CSW01_04975 0.11 +1.4
1,038,751 - CSW01_04975 0.28 -0.9
1,038,816 - CSW01_04975 0.44 -0.1
1,038,818 + CSW01_04975 0.44 -2.8
1,038,818 + CSW01_04975 0.44 +0.3
1,038,818 + CSW01_04975 0.44 +1.1
1,038,818 + CSW01_04975 0.44 -2.5
1,038,818 + CSW01_04975 0.44 -3.6
1,038,818 + CSW01_04975 0.44 +0.9
1,038,818 + CSW01_04975 0.44 -0.7
1,038,818 + CSW01_04975 0.44 +0.5
1,038,818 + CSW01_04975 0.44 -0.2
1,038,826 - CSW01_04975 0.46 +1.9
1,038,826 - CSW01_04975 0.46 +0.8
1,038,826 - CSW01_04975 0.46 -0.0
1,038,826 - CSW01_04975 0.46 +0.8
1,038,826 - CSW01_04975 0.46 +2.1
1,038,826 - CSW01_04975 0.46 +1.8
1,038,826 - CSW01_04975 0.46 +0.4
1,038,826 - CSW01_04975 0.46 -1.7
1,038,826 - CSW01_04975 0.46 +2.1
1,038,826 - CSW01_04975 0.46 -1.9
1,038,826 - CSW01_04975 0.46 +1.0
1,038,826 - CSW01_04975 0.46 +1.3
1,038,829 + CSW01_04975 0.47 +0.8
1,038,854 - CSW01_04975 0.53 -0.0
1,038,870 - CSW01_04975 0.56 -2.5
1,038,983 - CSW01_04975 0.83 +1.1
1,038,983 - CSW01_04975 0.83 -2.7
1,039,015 - -1.1
1,039,037 + +1.1
1,039,167 + CSW01_04980 0.16 -1.3
1,039,184 + CSW01_04980 0.20 +0.5
1,039,184 + CSW01_04980 0.20 +0.6
1,039,184 + CSW01_04980 0.20 +0.3
1,039,192 - CSW01_04980 0.21 -0.9
1,039,192 - CSW01_04980 0.21 +1.2
1,039,192 - CSW01_04980 0.21 +0.2
1,039,192 - CSW01_04980 0.21 +1.0
1,039,192 - CSW01_04980 0.21 +0.2
1,039,192 - CSW01_04980 0.21 +2.6
1,039,192 - CSW01_04980 0.21 -1.1
1,039,192 - CSW01_04980 0.21 +0.5
1,039,192 - CSW01_04980 0.21 +1.3
1,039,192 - CSW01_04980 0.21 -0.0
1,039,192 - CSW01_04980 0.21 -0.7
1,039,193 + CSW01_04980 0.22 -3.0
1,039,239 - CSW01_04980 0.32 -1.8
1,039,278 + CSW01_04980 0.40 +0.4
1,039,278 + CSW01_04980 0.40 +0.3
1,039,286 - CSW01_04980 0.42 -1.3
1,039,313 + CSW01_04980 0.48 -1.7
1,039,463 + CSW01_04980 0.82 +0.7
1,039,481 - CSW01_04980 0.86 +0.9
1,039,495 + CSW01_04980 0.89 -0.3
1,039,503 - -0.8
1,039,555 + -1.0
1,039,688 + CSW01_04985 0.15 -0.2
1,039,688 + CSW01_04985 0.15 -0.1
1,039,696 - CSW01_04985 0.16 +0.1
1,039,701 - CSW01_04985 0.16 +0.3
1,039,725 + CSW01_04985 0.19 +0.9
1,039,747 + CSW01_04985 0.21 -3.0
1,039,755 - CSW01_04985 0.22 +0.3
1,039,929 + CSW01_04985 0.41 +0.7
1,040,002 + CSW01_04985 0.49 +2.6
1,040,002 + CSW01_04985 0.49 -0.3
1,040,010 - CSW01_04985 0.50 -0.0
1,040,010 - CSW01_04985 0.50 +0.5
1,040,018 - CSW01_04985 0.50 +0.5

Or see this region's nucleotide sequence