Experiment: ICP3_phage_0.41_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_04520 and CSW01_04525 are separated by 65 nucleotides CSW01_04525 and CSW01_04530 overlap by 4 nucleotides CSW01_04530 and CSW01_04535 are separated by 764 nucleotides
CSW01_04520: CSW01_04520 - aminobenzoyl-glutamate transporter, at 939,944 to 941,530
_04520
CSW01_04525: CSW01_04525 - DUF188 domain-containing protein, at 941,596 to 942,045
_04525
CSW01_04530: CSW01_04530 - hypothetical protein, at 942,042 to 942,341
_04530
CSW01_04535: CSW01_04535 - N-acetyltransferase, at 943,106 to 943,729
_04535
Position (kb) 942
943 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 941.151 kb on - strand, within CSW01_04520 at 941.151 kb on - strand, within CSW01_04520 at 941.151 kb on - strand, within CSW01_04520 at 941.153 kb on + strand, within CSW01_04520 at 941.274 kb on + strand, within CSW01_04520 at 941.274 kb on + strand, within CSW01_04520 at 941.329 kb on - strand, within CSW01_04520 at 941.354 kb on - strand, within CSW01_04520 at 941.354 kb on - strand, within CSW01_04520 at 941.354 kb on - strand, within CSW01_04520 at 941.368 kb on + strand, within CSW01_04520 at 941.447 kb on + strand at 941.469 kb on - strand at 941.601 kb on - strand at 941.748 kb on + strand, within CSW01_04525 at 941.753 kb on + strand, within CSW01_04525 at 941.836 kb on - strand, within CSW01_04525 at 941.896 kb on + strand, within CSW01_04525 at 941.896 kb on + strand, within CSW01_04525 at 941.896 kb on + strand, within CSW01_04525 at 941.969 kb on + strand, within CSW01_04525 at 941.970 kb on - strand, within CSW01_04525 at 942.032 kb on + strand at 942.032 kb on + strand at 942.063 kb on - strand at 942.088 kb on + strand, within CSW01_04530 at 942.131 kb on + strand, within CSW01_04530 at 942.131 kb on + strand, within CSW01_04530 at 942.131 kb on + strand, within CSW01_04530 at 942.139 kb on - strand, within CSW01_04530 at 942.139 kb on - strand, within CSW01_04530 at 942.139 kb on - strand, within CSW01_04530 at 942.139 kb on - strand, within CSW01_04530 at 942.139 kb on - strand, within CSW01_04530 at 942.139 kb on - strand, within CSW01_04530 at 942.139 kb on - strand, within CSW01_04530 at 942.139 kb on - strand, within CSW01_04530 at 942.139 kb on - strand, within CSW01_04530 at 942.180 kb on + strand, within CSW01_04530 at 942.225 kb on + strand, within CSW01_04530 at 942.225 kb on + strand, within CSW01_04530 at 942.250 kb on + strand, within CSW01_04530 at 942.250 kb on + strand, within CSW01_04530 at 942.328 kb on + strand at 942.336 kb on - strand at 942.371 kb on - strand at 942.407 kb on + strand at 942.428 kb on - strand at 942.525 kb on + strand at 942.663 kb on + strand at 942.719 kb on + strand at 942.719 kb on + strand at 942.727 kb on - strand at 942.752 kb on - strand at 942.792 kb on + strand at 942.795 kb on - strand at 942.807 kb on + strand at 942.813 kb on + strand at 942.857 kb on + strand at 942.888 kb on - strand at 942.990 kb on - strand at 943.006 kb on + strand at 943.077 kb on + strand at 943.085 kb on - strand at 943.085 kb on - strand at 943.085 kb on - strand at 943.228 kb on + strand, within CSW01_04535 at 943.228 kb on + strand, within CSW01_04535 at 943.236 kb on - strand, within CSW01_04535
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep2 remove 941,151 - CSW01_04520 0.76 -0.5 941,151 - CSW01_04520 0.76 +1.2 941,151 - CSW01_04520 0.76 -1.4 941,153 + CSW01_04520 0.76 -0.1 941,274 + CSW01_04520 0.84 +1.0 941,274 + CSW01_04520 0.84 +1.3 941,329 - CSW01_04520 0.87 +1.7 941,354 - CSW01_04520 0.89 -1.3 941,354 - CSW01_04520 0.89 +0.7 941,354 - CSW01_04520 0.89 -0.9 941,368 + CSW01_04520 0.90 -0.2 941,447 + -0.4 941,469 - +0.0 941,601 - -1.4 941,748 + CSW01_04525 0.34 +0.3 941,753 + CSW01_04525 0.35 +0.9 941,836 - CSW01_04525 0.53 +0.2 941,896 + CSW01_04525 0.67 -0.1 941,896 + CSW01_04525 0.67 +0.1 941,896 + CSW01_04525 0.67 -1.5 941,969 + CSW01_04525 0.83 +0.0 941,970 - CSW01_04525 0.83 -3.7 942,032 + -0.4 942,032 + +1.5 942,063 - +2.1 942,088 + CSW01_04530 0.15 +1.5 942,131 + CSW01_04530 0.30 +1.2 942,131 + CSW01_04530 0.30 +1.0 942,131 + CSW01_04530 0.30 +0.4 942,139 - CSW01_04530 0.32 -0.9 942,139 - CSW01_04530 0.32 -1.2 942,139 - CSW01_04530 0.32 -1.5 942,139 - CSW01_04530 0.32 -0.7 942,139 - CSW01_04530 0.32 -0.6 942,139 - CSW01_04530 0.32 -0.1 942,139 - CSW01_04530 0.32 -0.4 942,139 - CSW01_04530 0.32 -3.2 942,139 - CSW01_04530 0.32 +0.5 942,180 + CSW01_04530 0.46 +0.8 942,225 + CSW01_04530 0.61 -3.5 942,225 + CSW01_04530 0.61 -0.3 942,250 + CSW01_04530 0.69 +0.4 942,250 + CSW01_04530 0.69 -1.8 942,328 + +0.5 942,336 - +0.6 942,371 - -1.5 942,407 + -1.3 942,428 - +1.3 942,525 + -1.1 942,663 + -1.0 942,719 + -0.6 942,719 + -1.0 942,727 - +0.9 942,752 - -0.5 942,792 + -0.9 942,795 - +0.9 942,807 + +0.2 942,813 + +1.3 942,857 + -0.6 942,888 - -1.9 942,990 - -0.4 943,006 + -0.3 943,077 + -0.1 943,085 - -0.4 943,085 - +0.8 943,085 - +0.5 943,228 + CSW01_04535 0.20 -0.6 943,228 + CSW01_04535 0.20 +0.5 943,236 - CSW01_04535 0.21 +0.3
Or see this region's nucleotide sequence