Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04265

Experiment: ICP3_phage_0.41_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04255 and CSW01_04260 overlap by 16 nucleotidesCSW01_04260 and CSW01_04265 are separated by 542 nucleotidesCSW01_04265 and CSW01_04270 are separated by 79 nucleotides CSW01_04255: CSW01_04255 - toxin coregulated pilus biosynthesis protein P, at 887,585 to 888,250 _04255 CSW01_04260: CSW01_04260 - pilus assembly protein, at 888,235 to 888,645 _04260 CSW01_04265: CSW01_04265 - toxin coregulated pilin, at 889,188 to 889,862 _04265 CSW01_04270: CSW01_04270 - toxin coregulated pilus biosynthesis protein B, at 889,942 to 891,234 _04270 Position (kb) 889 890Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 888.228 kb on + strandat 888.236 kb on - strandat 888.261 kb on - strandat 888.292 kb on + strand, within CSW01_04260at 888.301 kb on - strand, within CSW01_04260at 888.318 kb on - strand, within CSW01_04260at 888.391 kb on + strand, within CSW01_04260at 888.407 kb on + strand, within CSW01_04260at 888.420 kb on - strand, within CSW01_04260at 888.485 kb on - strand, within CSW01_04260at 888.519 kb on + strand, within CSW01_04260at 888.570 kb on + strand, within CSW01_04260at 888.600 kb on + strand, within CSW01_04260at 888.663 kb on + strandat 888.687 kb on + strandat 888.697 kb on + strandat 888.697 kb on + strandat 888.730 kb on - strandat 888.732 kb on + strandat 888.732 kb on + strandat 888.732 kb on + strandat 888.740 kb on - strandat 888.740 kb on - strandat 888.788 kb on + strandat 888.788 kb on + strandat 888.799 kb on + strandat 888.799 kb on + strandat 888.799 kb on + strandat 888.803 kb on + strandat 888.806 kb on + strandat 888.807 kb on - strandat 888.807 kb on - strandat 888.829 kb on - strandat 888.829 kb on - strandat 888.834 kb on + strandat 888.866 kb on - strandat 889.034 kb on - strandat 889.034 kb on - strandat 889.034 kb on - strandat 889.138 kb on + strandat 889.143 kb on + strandat 889.146 kb on - strandat 889.249 kb on + strandat 889.259 kb on + strand, within CSW01_04265at 889.260 kb on + strand, within CSW01_04265at 889.260 kb on + strand, within CSW01_04265at 889.267 kb on - strand, within CSW01_04265at 889.267 kb on - strand, within CSW01_04265at 889.268 kb on - strand, within CSW01_04265at 889.287 kb on + strand, within CSW01_04265at 889.295 kb on - strand, within CSW01_04265at 889.297 kb on + strand, within CSW01_04265at 889.307 kb on + strand, within CSW01_04265at 889.315 kb on - strand, within CSW01_04265at 889.315 kb on - strand, within CSW01_04265at 889.315 kb on - strand, within CSW01_04265at 889.315 kb on - strand, within CSW01_04265at 889.329 kb on - strand, within CSW01_04265at 889.329 kb on - strand, within CSW01_04265at 889.331 kb on + strand, within CSW01_04265at 889.331 kb on + strand, within CSW01_04265at 889.331 kb on + strand, within CSW01_04265at 889.331 kb on + strand, within CSW01_04265at 889.339 kb on - strand, within CSW01_04265at 889.345 kb on - strand, within CSW01_04265at 889.355 kb on + strand, within CSW01_04265at 889.361 kb on + strand, within CSW01_04265at 889.361 kb on + strand, within CSW01_04265at 889.361 kb on + strand, within CSW01_04265at 889.369 kb on - strand, within CSW01_04265at 889.385 kb on - strand, within CSW01_04265at 889.461 kb on - strand, within CSW01_04265at 889.464 kb on + strand, within CSW01_04265at 889.464 kb on - strand, within CSW01_04265at 889.469 kb on + strand, within CSW01_04265at 889.481 kb on + strand, within CSW01_04265at 889.484 kb on - strand, within CSW01_04265at 889.484 kb on - strand, within CSW01_04265at 889.489 kb on - strand, within CSW01_04265at 889.489 kb on - strand, within CSW01_04265at 889.494 kb on - strand, within CSW01_04265at 889.494 kb on - strand, within CSW01_04265at 889.494 kb on - strand, within CSW01_04265at 889.504 kb on - strand, within CSW01_04265at 889.523 kb on + strand, within CSW01_04265at 889.536 kb on + strand, within CSW01_04265at 889.564 kb on + strand, within CSW01_04265at 889.565 kb on + strand, within CSW01_04265at 889.602 kb on + strand, within CSW01_04265at 889.602 kb on + strand, within CSW01_04265at 889.602 kb on + strand, within CSW01_04265at 889.602 kb on + strand, within CSW01_04265at 889.609 kb on + strand, within CSW01_04265at 889.610 kb on - strand, within CSW01_04265at 889.610 kb on - strand, within CSW01_04265at 889.619 kb on + strand, within CSW01_04265at 889.619 kb on + strand, within CSW01_04265at 889.619 kb on + strand, within CSW01_04265at 889.627 kb on - strand, within CSW01_04265at 889.627 kb on - strand, within CSW01_04265at 889.639 kb on + strand, within CSW01_04265at 889.644 kb on + strand, within CSW01_04265at 889.728 kb on - strand, within CSW01_04265at 889.772 kb on - strand, within CSW01_04265at 889.780 kb on + strand, within CSW01_04265at 889.780 kb on + strand, within CSW01_04265at 889.780 kb on + strand, within CSW01_04265at 889.780 kb on + strand, within CSW01_04265at 889.780 kb on + strand, within CSW01_04265at 889.780 kb on + strand, within CSW01_04265at 889.788 kb on - strand, within CSW01_04265at 889.793 kb on - strand, within CSW01_04265at 889.801 kb on + strandat 889.809 kb on + strandat 889.814 kb on + strandat 889.814 kb on + strandat 889.814 kb on + strandat 889.815 kb on - strandat 889.822 kb on - strandat 889.822 kb on - strandat 889.822 kb on - strandat 889.825 kb on + strandat 889.828 kb on - strandat 889.830 kb on + strandat 889.833 kb on - strandat 889.838 kb on - strandat 889.838 kb on - strandat 889.843 kb on - strandat 889.843 kb on - strandat 889.843 kb on - strandat 889.856 kb on + strandat 889.856 kb on + strandat 889.864 kb on - strandat 889.864 kb on - strandat 889.864 kb on - strandat 889.864 kb on - strandat 889.864 kb on - strandat 889.864 kb on - strandat 889.877 kb on - strandat 889.960 kb on + strandat 889.981 kb on + strandat 889.996 kb on + strandat 889.996 kb on + strandat 889.999 kb on - strandat 890.004 kb on - strandat 890.011 kb on - strandat 890.013 kb on + strandat 890.020 kb on + strandat 890.028 kb on - strandat 890.072 kb on + strand, within CSW01_04270at 890.072 kb on + strand, within CSW01_04270at 890.080 kb on - strand, within CSW01_04270at 890.080 kb on - strand, within CSW01_04270at 890.080 kb on - strand, within CSW01_04270at 890.088 kb on - strand, within CSW01_04270at 890.096 kb on - strand, within CSW01_04270at 890.108 kb on - strand, within CSW01_04270at 890.109 kb on - strand, within CSW01_04270at 890.145 kb on + strand, within CSW01_04270at 890.198 kb on + strand, within CSW01_04270at 890.214 kb on + strand, within CSW01_04270at 890.214 kb on - strand, within CSW01_04270at 890.230 kb on - strand, within CSW01_04270at 890.235 kb on + strand, within CSW01_04270at 890.253 kb on - strand, within CSW01_04270at 890.253 kb on - strand, within CSW01_04270at 890.271 kb on + strand, within CSW01_04270at 890.279 kb on - strand, within CSW01_04270at 890.290 kb on + strand, within CSW01_04270at 890.290 kb on + strand, within CSW01_04270at 890.290 kb on + strand, within CSW01_04270at 890.298 kb on - strand, within CSW01_04270at 890.298 kb on - strand, within CSW01_04270at 890.305 kb on + strand, within CSW01_04270at 890.335 kb on - strand, within CSW01_04270at 890.342 kb on + strand, within CSW01_04270at 890.350 kb on - strand, within CSW01_04270at 890.404 kb on - strand, within CSW01_04270at 890.448 kb on - strand, within CSW01_04270at 890.457 kb on - strand, within CSW01_04270at 890.493 kb on - strand, within CSW01_04270at 890.499 kb on + strand, within CSW01_04270at 890.508 kb on + strand, within CSW01_04270at 890.550 kb on - strand, within CSW01_04270at 890.620 kb on + strand, within CSW01_04270at 890.620 kb on + strand, within CSW01_04270at 890.620 kb on + strand, within CSW01_04270at 890.628 kb on - strand, within CSW01_04270at 890.634 kb on + strand, within CSW01_04270at 890.651 kb on - strand, within CSW01_04270at 890.699 kb on + strand, within CSW01_04270at 890.699 kb on + strand, within CSW01_04270at 890.699 kb on + strand, within CSW01_04270at 890.709 kb on + strand, within CSW01_04270at 890.709 kb on + strand, within CSW01_04270at 890.712 kb on - strand, within CSW01_04270at 890.717 kb on - strand, within CSW01_04270at 890.717 kb on - strand, within CSW01_04270at 890.730 kb on - strand, within CSW01_04270at 890.732 kb on + strand, within CSW01_04270at 890.732 kb on + strand, within CSW01_04270at 890.732 kb on + strand, within CSW01_04270at 890.732 kb on + strand, within CSW01_04270at 890.732 kb on + strand, within CSW01_04270at 890.736 kb on - strand, within CSW01_04270at 890.740 kb on - strand, within CSW01_04270at 890.740 kb on - strand, within CSW01_04270at 890.747 kb on - strand, within CSW01_04270at 890.752 kb on + strand, within CSW01_04270at 890.752 kb on + strand, within CSW01_04270at 890.757 kb on + strand, within CSW01_04270at 890.765 kb on - strand, within CSW01_04270at 890.803 kb on + strand, within CSW01_04270at 890.803 kb on + strand, within CSW01_04270at 890.803 kb on + strand, within CSW01_04270at 890.803 kb on + strand, within CSW01_04270at 890.803 kb on + strand, within CSW01_04270at 890.803 kb on + strand, within CSW01_04270at 890.803 kb on + strand, within CSW01_04270at 890.803 kb on + strand, within CSW01_04270at 890.808 kb on + strand, within CSW01_04270at 890.811 kb on - strand, within CSW01_04270at 890.811 kb on - strand, within CSW01_04270at 890.811 kb on - strand, within CSW01_04270at 890.821 kb on - strand, within CSW01_04270

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep2
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888,228 + +0.3
888,236 - +0.9
888,261 - +0.8
888,292 + CSW01_04260 0.14 +0.9
888,301 - CSW01_04260 0.16 -0.8
888,318 - CSW01_04260 0.20 -0.5
888,391 + CSW01_04260 0.38 -0.5
888,407 + CSW01_04260 0.42 -2.7
888,420 - CSW01_04260 0.45 -1.3
888,485 - CSW01_04260 0.61 -2.6
888,519 + CSW01_04260 0.69 -1.7
888,570 + CSW01_04260 0.82 -4.3
888,600 + CSW01_04260 0.89 -1.7
888,663 + -0.9
888,687 + -1.1
888,697 + -0.8
888,697 + +0.0
888,730 - -0.2
888,732 + +1.6
888,732 + +1.1
888,732 + +1.0
888,740 - -2.4
888,740 - -1.3
888,788 + +1.0
888,788 + +1.5
888,799 + +1.6
888,799 + +1.5
888,799 + +2.2
888,803 + -3.5
888,806 + +0.6
888,807 - -2.7
888,807 - -2.6
888,829 - +0.2
888,829 - +1.2
888,834 + -0.5
888,866 - +0.6
889,034 - +0.5
889,034 - +0.3
889,034 - -0.4
889,138 + +0.6
889,143 + -1.2
889,146 - +1.1
889,249 + -0.3
889,259 + CSW01_04265 0.11 +1.0
889,260 + CSW01_04265 0.11 -1.2
889,260 + CSW01_04265 0.11 -0.9
889,267 - CSW01_04265 0.12 +0.8
889,267 - CSW01_04265 0.12 +0.3
889,268 - CSW01_04265 0.12 +0.7
889,287 + CSW01_04265 0.15 -1.1
889,295 - CSW01_04265 0.16 -0.5
889,297 + CSW01_04265 0.16 +0.1
889,307 + CSW01_04265 0.18 -4.0
889,315 - CSW01_04265 0.19 -0.1
889,315 - CSW01_04265 0.19 +1.8
889,315 - CSW01_04265 0.19 +1.9
889,315 - CSW01_04265 0.19 -0.6
889,329 - CSW01_04265 0.21 -1.3
889,329 - CSW01_04265 0.21 +0.0
889,331 + CSW01_04265 0.21 +1.7
889,331 + CSW01_04265 0.21 -0.4
889,331 + CSW01_04265 0.21 +0.3
889,331 + CSW01_04265 0.21 +0.6
889,339 - CSW01_04265 0.22 -1.4
889,345 - CSW01_04265 0.23 +1.3
889,355 + CSW01_04265 0.25 -0.5
889,361 + CSW01_04265 0.26 +1.5
889,361 + CSW01_04265 0.26 +0.1
889,361 + CSW01_04265 0.26 +0.2
889,369 - CSW01_04265 0.27 -0.2
889,385 - CSW01_04265 0.29 -0.3
889,461 - CSW01_04265 0.40 +0.5
889,464 + CSW01_04265 0.41 +0.4
889,464 - CSW01_04265 0.41 +0.8
889,469 + CSW01_04265 0.42 -2.9
889,481 + CSW01_04265 0.43 +0.5
889,484 - CSW01_04265 0.44 +0.6
889,484 - CSW01_04265 0.44 -3.9
889,489 - CSW01_04265 0.45 +0.6
889,489 - CSW01_04265 0.45 +2.2
889,494 - CSW01_04265 0.45 -0.5
889,494 - CSW01_04265 0.45 -0.2
889,494 - CSW01_04265 0.45 +0.8
889,504 - CSW01_04265 0.47 +0.3
889,523 + CSW01_04265 0.50 -2.8
889,536 + CSW01_04265 0.52 +0.1
889,564 + CSW01_04265 0.56 -0.1
889,565 + CSW01_04265 0.56 -0.7
889,602 + CSW01_04265 0.61 +0.4
889,602 + CSW01_04265 0.61 +0.6
889,602 + CSW01_04265 0.61 -1.7
889,602 + CSW01_04265 0.61 -0.8
889,609 + CSW01_04265 0.62 -2.6
889,610 - CSW01_04265 0.63 +0.6
889,610 - CSW01_04265 0.63 +2.2
889,619 + CSW01_04265 0.64 -1.3
889,619 + CSW01_04265 0.64 -1.9
889,619 + CSW01_04265 0.64 +1.2
889,627 - CSW01_04265 0.65 +0.2
889,627 - CSW01_04265 0.65 -0.8
889,639 + CSW01_04265 0.67 +1.3
889,644 + CSW01_04265 0.68 +1.3
889,728 - CSW01_04265 0.80 +1.4
889,772 - CSW01_04265 0.87 -1.7
889,780 + CSW01_04265 0.88 +2.0
889,780 + CSW01_04265 0.88 +1.2
889,780 + CSW01_04265 0.88 -1.5
889,780 + CSW01_04265 0.88 +0.5
889,780 + CSW01_04265 0.88 -0.3
889,780 + CSW01_04265 0.88 +2.1
889,788 - CSW01_04265 0.89 +1.7
889,793 - CSW01_04265 0.90 -1.8
889,801 + +1.1
889,809 + -1.2
889,814 + -2.0
889,814 + -1.1
889,814 + -0.0
889,815 - +0.1
889,822 - -1.1
889,822 - +0.2
889,822 - -0.5
889,825 + -3.1
889,828 - -1.3
889,830 + -0.2
889,833 - +1.2
889,838 - +1.5
889,838 - -2.3
889,843 - -0.2
889,843 - -2.1
889,843 - -3.3
889,856 + -1.4
889,856 + +0.3
889,864 - +0.8
889,864 - -3.3
889,864 - -0.3
889,864 - +0.3
889,864 - -0.1
889,864 - +0.3
889,877 - +0.2
889,960 + +0.2
889,981 + +0.0
889,996 + +0.0
889,996 + +0.2
889,999 - -3.1
890,004 - +2.4
890,011 - -0.5
890,013 + -1.3
890,020 + +1.4
890,028 - +1.1
890,072 + CSW01_04270 0.10 -2.2
890,072 + CSW01_04270 0.10 +0.5
890,080 - CSW01_04270 0.11 -2.9
890,080 - CSW01_04270 0.11 +2.0
890,080 - CSW01_04270 0.11 -3.0
890,088 - CSW01_04270 0.11 +3.4
890,096 - CSW01_04270 0.12 +1.1
890,108 - CSW01_04270 0.13 +0.3
890,109 - CSW01_04270 0.13 +0.0
890,145 + CSW01_04270 0.16 -4.7
890,198 + CSW01_04270 0.20 -2.0
890,214 + CSW01_04270 0.21 -4.6
890,214 - CSW01_04270 0.21 -1.7
890,230 - CSW01_04270 0.22 +0.3
890,235 + CSW01_04270 0.23 -2.9
890,253 - CSW01_04270 0.24 +3.7
890,253 - CSW01_04270 0.24 -4.5
890,271 + CSW01_04270 0.25 +0.7
890,279 - CSW01_04270 0.26 -0.6
890,290 + CSW01_04270 0.27 +0.2
890,290 + CSW01_04270 0.27 -0.9
890,290 + CSW01_04270 0.27 -0.2
890,298 - CSW01_04270 0.28 +1.0
890,298 - CSW01_04270 0.28 -0.6
890,305 + CSW01_04270 0.28 +1.3
890,335 - CSW01_04270 0.30 +0.7
890,342 + CSW01_04270 0.31 -1.4
890,350 - CSW01_04270 0.32 -1.4
890,404 - CSW01_04270 0.36 -2.9
890,448 - CSW01_04270 0.39 +1.5
890,457 - CSW01_04270 0.40 +0.4
890,493 - CSW01_04270 0.43 +2.9
890,499 + CSW01_04270 0.43 -0.2
890,508 + CSW01_04270 0.44 -1.9
890,550 - CSW01_04270 0.47 +1.4
890,620 + CSW01_04270 0.52 -0.8
890,620 + CSW01_04270 0.52 +1.7
890,620 + CSW01_04270 0.52 -1.0
890,628 - CSW01_04270 0.53 +1.6
890,634 + CSW01_04270 0.54 +0.5
890,651 - CSW01_04270 0.55 +1.4
890,699 + CSW01_04270 0.59 -0.1
890,699 + CSW01_04270 0.59 +0.2
890,699 + CSW01_04270 0.59 -1.2
890,709 + CSW01_04270 0.59 +0.2
890,709 + CSW01_04270 0.59 -2.2
890,712 - CSW01_04270 0.60 -4.0
890,717 - CSW01_04270 0.60 +0.5
890,717 - CSW01_04270 0.60 -0.7
890,730 - CSW01_04270 0.61 -0.3
890,732 + CSW01_04270 0.61 -2.9
890,732 + CSW01_04270 0.61 -0.6
890,732 + CSW01_04270 0.61 +0.5
890,732 + CSW01_04270 0.61 -0.6
890,732 + CSW01_04270 0.61 -1.4
890,736 - CSW01_04270 0.61 +0.9
890,740 - CSW01_04270 0.62 +0.6
890,740 - CSW01_04270 0.62 -0.1
890,747 - CSW01_04270 0.62 -3.0
890,752 + CSW01_04270 0.63 +0.2
890,752 + CSW01_04270 0.63 +1.1
890,757 + CSW01_04270 0.63 +1.0
890,765 - CSW01_04270 0.64 -0.5
890,803 + CSW01_04270 0.67 +0.2
890,803 + CSW01_04270 0.67 -3.2
890,803 + CSW01_04270 0.67 -1.4
890,803 + CSW01_04270 0.67 -4.4
890,803 + CSW01_04270 0.67 -0.3
890,803 + CSW01_04270 0.67 -2.2
890,803 + CSW01_04270 0.67 -1.1
890,803 + CSW01_04270 0.67 +0.1
890,808 + CSW01_04270 0.67 +1.2
890,811 - CSW01_04270 0.67 +0.5
890,811 - CSW01_04270 0.67 +0.8
890,811 - CSW01_04270 0.67 +0.4
890,821 - CSW01_04270 0.68 -0.8

Or see this region's nucleotide sequence