Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04260

Experiment: ICP3_phage_0.41_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04255 and CSW01_04260 overlap by 16 nucleotidesCSW01_04260 and CSW01_04265 are separated by 542 nucleotides CSW01_04255: CSW01_04255 - toxin coregulated pilus biosynthesis protein P, at 887,585 to 888,250 _04255 CSW01_04260: CSW01_04260 - pilus assembly protein, at 888,235 to 888,645 _04260 CSW01_04265: CSW01_04265 - toxin coregulated pilin, at 889,188 to 889,862 _04265 Position (kb) 888 889Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 887.302 kb on + strandat 887.311 kb on + strandat 887.311 kb on + strandat 887.367 kb on + strandat 887.367 kb on + strandat 887.367 kb on + strandat 887.369 kb on + strandat 887.375 kb on - strandat 887.375 kb on - strandat 887.375 kb on - strandat 887.375 kb on - strandat 887.375 kb on - strandat 887.375 kb on - strandat 887.375 kb on - strandat 887.375 kb on - strandat 887.375 kb on - strandat 887.375 kb on - strandat 887.375 kb on - strandat 887.377 kb on - strandat 887.377 kb on - strandat 887.377 kb on - strandat 887.379 kb on + strandat 887.379 kb on + strandat 887.379 kb on + strandat 887.387 kb on - strandat 887.387 kb on - strandat 887.387 kb on - strandat 887.387 kb on - strandat 887.387 kb on - strandat 887.588 kb on + strandat 887.588 kb on + strandat 887.588 kb on + strandat 887.590 kb on - strandat 887.623 kb on + strandat 887.631 kb on + strandat 887.636 kb on + strandat 887.653 kb on - strand, within CSW01_04255at 887.653 kb on - strand, within CSW01_04255at 887.653 kb on - strand, within CSW01_04255at 887.679 kb on - strand, within CSW01_04255at 887.687 kb on - strand, within CSW01_04255at 887.689 kb on + strand, within CSW01_04255at 887.689 kb on + strand, within CSW01_04255at 887.689 kb on + strand, within CSW01_04255at 887.697 kb on - strand, within CSW01_04255at 887.703 kb on + strand, within CSW01_04255at 887.703 kb on + strand, within CSW01_04255at 887.703 kb on + strand, within CSW01_04255at 887.703 kb on + strand, within CSW01_04255at 887.703 kb on + strand, within CSW01_04255at 887.703 kb on + strand, within CSW01_04255at 887.703 kb on + strand, within CSW01_04255at 887.703 kb on + strand, within CSW01_04255at 887.703 kb on + strand, within CSW01_04255at 887.703 kb on + strand, within CSW01_04255at 887.711 kb on - strand, within CSW01_04255at 887.711 kb on - strand, within CSW01_04255at 887.711 kb on - strand, within CSW01_04255at 887.711 kb on - strand, within CSW01_04255at 887.711 kb on - strand, within CSW01_04255at 887.711 kb on - strand, within CSW01_04255at 887.711 kb on - strand, within CSW01_04255at 887.711 kb on - strand, within CSW01_04255at 887.711 kb on - strand, within CSW01_04255at 887.711 kb on - strand, within CSW01_04255at 887.711 kb on - strand, within CSW01_04255at 887.711 kb on - strand, within CSW01_04255at 887.711 kb on - strand, within CSW01_04255at 887.711 kb on - strand, within CSW01_04255at 887.713 kb on + strand, within CSW01_04255at 887.803 kb on - strand, within CSW01_04255at 887.806 kb on - strand, within CSW01_04255at 887.814 kb on + strand, within CSW01_04255at 887.822 kb on - strand, within CSW01_04255at 887.822 kb on - strand, within CSW01_04255at 887.822 kb on - strand, within CSW01_04255at 887.858 kb on + strand, within CSW01_04255at 887.895 kb on - strand, within CSW01_04255at 887.895 kb on - strand, within CSW01_04255at 887.895 kb on - strand, within CSW01_04255at 888.079 kb on - strand, within CSW01_04255at 888.080 kb on - strand, within CSW01_04255at 888.105 kb on + strand, within CSW01_04255at 888.105 kb on + strand, within CSW01_04255at 888.113 kb on - strand, within CSW01_04255at 888.228 kb on + strandat 888.236 kb on - strandat 888.261 kb on - strandat 888.292 kb on + strand, within CSW01_04260at 888.301 kb on - strand, within CSW01_04260at 888.318 kb on - strand, within CSW01_04260at 888.391 kb on + strand, within CSW01_04260at 888.407 kb on + strand, within CSW01_04260at 888.420 kb on - strand, within CSW01_04260at 888.485 kb on - strand, within CSW01_04260at 888.519 kb on + strand, within CSW01_04260at 888.570 kb on + strand, within CSW01_04260at 888.600 kb on + strand, within CSW01_04260at 888.663 kb on + strandat 888.687 kb on + strandat 888.697 kb on + strandat 888.697 kb on + strandat 888.730 kb on - strandat 888.732 kb on + strandat 888.732 kb on + strandat 888.732 kb on + strandat 888.740 kb on - strandat 888.740 kb on - strandat 888.788 kb on + strandat 888.788 kb on + strandat 888.799 kb on + strandat 888.799 kb on + strandat 888.799 kb on + strandat 888.803 kb on + strandat 888.806 kb on + strandat 888.807 kb on - strandat 888.807 kb on - strandat 888.829 kb on - strandat 888.829 kb on - strandat 888.834 kb on + strandat 888.866 kb on - strandat 889.034 kb on - strandat 889.034 kb on - strandat 889.034 kb on - strandat 889.138 kb on + strandat 889.143 kb on + strandat 889.146 kb on - strandat 889.249 kb on + strandat 889.259 kb on + strand, within CSW01_04265at 889.260 kb on + strand, within CSW01_04265at 889.260 kb on + strand, within CSW01_04265at 889.267 kb on - strand, within CSW01_04265at 889.267 kb on - strand, within CSW01_04265at 889.268 kb on - strand, within CSW01_04265at 889.287 kb on + strand, within CSW01_04265at 889.295 kb on - strand, within CSW01_04265at 889.297 kb on + strand, within CSW01_04265at 889.307 kb on + strand, within CSW01_04265at 889.315 kb on - strand, within CSW01_04265at 889.315 kb on - strand, within CSW01_04265at 889.315 kb on - strand, within CSW01_04265at 889.315 kb on - strand, within CSW01_04265at 889.329 kb on - strand, within CSW01_04265at 889.329 kb on - strand, within CSW01_04265at 889.331 kb on + strand, within CSW01_04265at 889.331 kb on + strand, within CSW01_04265at 889.331 kb on + strand, within CSW01_04265at 889.331 kb on + strand, within CSW01_04265at 889.339 kb on - strand, within CSW01_04265at 889.345 kb on - strand, within CSW01_04265at 889.355 kb on + strand, within CSW01_04265at 889.361 kb on + strand, within CSW01_04265at 889.361 kb on + strand, within CSW01_04265at 889.361 kb on + strand, within CSW01_04265at 889.369 kb on - strand, within CSW01_04265at 889.385 kb on - strand, within CSW01_04265at 889.461 kb on - strand, within CSW01_04265at 889.464 kb on + strand, within CSW01_04265at 889.464 kb on - strand, within CSW01_04265at 889.469 kb on + strand, within CSW01_04265at 889.481 kb on + strand, within CSW01_04265at 889.484 kb on - strand, within CSW01_04265at 889.484 kb on - strand, within CSW01_04265at 889.489 kb on - strand, within CSW01_04265at 889.489 kb on - strand, within CSW01_04265at 889.494 kb on - strand, within CSW01_04265at 889.494 kb on - strand, within CSW01_04265at 889.494 kb on - strand, within CSW01_04265at 889.504 kb on - strand, within CSW01_04265at 889.523 kb on + strand, within CSW01_04265at 889.536 kb on + strand, within CSW01_04265at 889.564 kb on + strand, within CSW01_04265at 889.565 kb on + strand, within CSW01_04265at 889.602 kb on + strand, within CSW01_04265at 889.602 kb on + strand, within CSW01_04265at 889.602 kb on + strand, within CSW01_04265at 889.602 kb on + strand, within CSW01_04265at 889.609 kb on + strand, within CSW01_04265at 889.610 kb on - strand, within CSW01_04265at 889.610 kb on - strand, within CSW01_04265at 889.619 kb on + strand, within CSW01_04265at 889.619 kb on + strand, within CSW01_04265at 889.619 kb on + strand, within CSW01_04265at 889.627 kb on - strand, within CSW01_04265at 889.627 kb on - strand, within CSW01_04265at 889.639 kb on + strand, within CSW01_04265at 889.644 kb on + strand, within CSW01_04265

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep2
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887,302 + -0.7
887,311 + +0.9
887,311 + -0.8
887,367 + +0.5
887,367 + +1.6
887,367 + +0.9
887,369 + +0.6
887,375 - -0.2
887,375 - -2.6
887,375 - -3.2
887,375 - +3.6
887,375 - +0.6
887,375 - -1.2
887,375 - -1.5
887,375 - +0.4
887,375 - -0.4
887,375 - -0.3
887,375 - +1.2
887,377 - +0.4
887,377 - -1.2
887,377 - -0.1
887,379 + -0.3
887,379 + +0.2
887,379 + -1.0
887,387 - -2.0
887,387 - -1.2
887,387 - +0.5
887,387 - -4.1
887,387 - +0.2
887,588 + -2.9
887,588 + -0.2
887,588 + +0.7
887,590 - -2.7
887,623 + -0.5
887,631 + -0.6
887,636 + +0.4
887,653 - CSW01_04255 0.10 +0.6
887,653 - CSW01_04255 0.10 +0.6
887,653 - CSW01_04255 0.10 +0.2
887,679 - CSW01_04255 0.14 +1.2
887,687 - CSW01_04255 0.15 +0.6
887,689 + CSW01_04255 0.16 -2.7
887,689 + CSW01_04255 0.16 -0.1
887,689 + CSW01_04255 0.16 +0.2
887,697 - CSW01_04255 0.17 +0.2
887,703 + CSW01_04255 0.18 -0.4
887,703 + CSW01_04255 0.18 -1.9
887,703 + CSW01_04255 0.18 +1.7
887,703 + CSW01_04255 0.18 +0.7
887,703 + CSW01_04255 0.18 +0.0
887,703 + CSW01_04255 0.18 -1.0
887,703 + CSW01_04255 0.18 +0.9
887,703 + CSW01_04255 0.18 -0.7
887,703 + CSW01_04255 0.18 -0.9
887,703 + CSW01_04255 0.18 +0.9
887,711 - CSW01_04255 0.19 +1.7
887,711 - CSW01_04255 0.19 +1.0
887,711 - CSW01_04255 0.19 -2.3
887,711 - CSW01_04255 0.19 -2.1
887,711 - CSW01_04255 0.19 +0.2
887,711 - CSW01_04255 0.19 +0.1
887,711 - CSW01_04255 0.19 +0.4
887,711 - CSW01_04255 0.19 -0.4
887,711 - CSW01_04255 0.19 +0.3
887,711 - CSW01_04255 0.19 +0.0
887,711 - CSW01_04255 0.19 -1.1
887,711 - CSW01_04255 0.19 -3.1
887,711 - CSW01_04255 0.19 +0.2
887,711 - CSW01_04255 0.19 -0.0
887,713 + CSW01_04255 0.19 -0.2
887,803 - CSW01_04255 0.33 +1.5
887,806 - CSW01_04255 0.33 +0.6
887,814 + CSW01_04255 0.34 -0.4
887,822 - CSW01_04255 0.36 -3.1
887,822 - CSW01_04255 0.36 -3.4
887,822 - CSW01_04255 0.36 +0.5
887,858 + CSW01_04255 0.41 -0.2
887,895 - CSW01_04255 0.47 -3.5
887,895 - CSW01_04255 0.47 -1.1
887,895 - CSW01_04255 0.47 -0.5
888,079 - CSW01_04255 0.74 +0.8
888,080 - CSW01_04255 0.74 +1.1
888,105 + CSW01_04255 0.78 -1.3
888,105 + CSW01_04255 0.78 -1.9
888,113 - CSW01_04255 0.79 +0.9
888,228 + +0.3
888,236 - +0.9
888,261 - +0.8
888,292 + CSW01_04260 0.14 +0.9
888,301 - CSW01_04260 0.16 -0.8
888,318 - CSW01_04260 0.20 -0.5
888,391 + CSW01_04260 0.38 -0.5
888,407 + CSW01_04260 0.42 -2.7
888,420 - CSW01_04260 0.45 -1.3
888,485 - CSW01_04260 0.61 -2.6
888,519 + CSW01_04260 0.69 -1.7
888,570 + CSW01_04260 0.82 -4.3
888,600 + CSW01_04260 0.89 -1.7
888,663 + -0.9
888,687 + -1.1
888,697 + -0.8
888,697 + +0.0
888,730 - -0.2
888,732 + +1.6
888,732 + +1.1
888,732 + +1.0
888,740 - -2.4
888,740 - -1.3
888,788 + +1.0
888,788 + +1.5
888,799 + +1.6
888,799 + +1.5
888,799 + +2.2
888,803 + -3.5
888,806 + +0.6
888,807 - -2.7
888,807 - -2.6
888,829 - +0.2
888,829 - +1.2
888,834 + -0.5
888,866 - +0.6
889,034 - +0.5
889,034 - +0.3
889,034 - -0.4
889,138 + +0.6
889,143 + -1.2
889,146 - +1.1
889,249 + -0.3
889,259 + CSW01_04265 0.11 +1.0
889,260 + CSW01_04265 0.11 -1.2
889,260 + CSW01_04265 0.11 -0.9
889,267 - CSW01_04265 0.12 +0.8
889,267 - CSW01_04265 0.12 +0.3
889,268 - CSW01_04265 0.12 +0.7
889,287 + CSW01_04265 0.15 -1.1
889,295 - CSW01_04265 0.16 -0.5
889,297 + CSW01_04265 0.16 +0.1
889,307 + CSW01_04265 0.18 -4.0
889,315 - CSW01_04265 0.19 -0.1
889,315 - CSW01_04265 0.19 +1.8
889,315 - CSW01_04265 0.19 +1.9
889,315 - CSW01_04265 0.19 -0.6
889,329 - CSW01_04265 0.21 -1.3
889,329 - CSW01_04265 0.21 +0.0
889,331 + CSW01_04265 0.21 +1.7
889,331 + CSW01_04265 0.21 -0.4
889,331 + CSW01_04265 0.21 +0.3
889,331 + CSW01_04265 0.21 +0.6
889,339 - CSW01_04265 0.22 -1.4
889,345 - CSW01_04265 0.23 +1.3
889,355 + CSW01_04265 0.25 -0.5
889,361 + CSW01_04265 0.26 +1.5
889,361 + CSW01_04265 0.26 +0.1
889,361 + CSW01_04265 0.26 +0.2
889,369 - CSW01_04265 0.27 -0.2
889,385 - CSW01_04265 0.29 -0.3
889,461 - CSW01_04265 0.40 +0.5
889,464 + CSW01_04265 0.41 +0.4
889,464 - CSW01_04265 0.41 +0.8
889,469 + CSW01_04265 0.42 -2.9
889,481 + CSW01_04265 0.43 +0.5
889,484 - CSW01_04265 0.44 +0.6
889,484 - CSW01_04265 0.44 -3.9
889,489 - CSW01_04265 0.45 +0.6
889,489 - CSW01_04265 0.45 +2.2
889,494 - CSW01_04265 0.45 -0.5
889,494 - CSW01_04265 0.45 -0.2
889,494 - CSW01_04265 0.45 +0.8
889,504 - CSW01_04265 0.47 +0.3
889,523 + CSW01_04265 0.50 -2.8
889,536 + CSW01_04265 0.52 +0.1
889,564 + CSW01_04265 0.56 -0.1
889,565 + CSW01_04265 0.56 -0.7
889,602 + CSW01_04265 0.61 +0.4
889,602 + CSW01_04265 0.61 +0.6
889,602 + CSW01_04265 0.61 -1.7
889,602 + CSW01_04265 0.61 -0.8
889,609 + CSW01_04265 0.62 -2.6
889,610 - CSW01_04265 0.63 +0.6
889,610 - CSW01_04265 0.63 +2.2
889,619 + CSW01_04265 0.64 -1.3
889,619 + CSW01_04265 0.64 -1.9
889,619 + CSW01_04265 0.64 +1.2
889,627 - CSW01_04265 0.65 +0.2
889,627 - CSW01_04265 0.65 -0.8
889,639 + CSW01_04265 0.67 +1.3
889,644 + CSW01_04265 0.68 +1.3

Or see this region's nucleotide sequence