Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03635

Experiment: ICP3_phage_0.41_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03630 and CSW01_03635 are separated by 241 nucleotidesCSW01_03635 and CSW01_03640 are separated by 12 nucleotides CSW01_03630: CSW01_03630 - sensor histidine kinase, at 740,360 to 742,036 _03630 CSW01_03635: CSW01_03635 - 3-deoxy-7-phosphoheptulonate synthase, at 742,278 to 743,351 _03635 CSW01_03640: CSW01_03640 - bifunctional chorismate mutase/prephenate dehydrogenase, at 743,364 to 744,491 _03640 Position (kb) 742 743 744Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 741.304 kb on - strand, within CSW01_03630at 741.322 kb on + strand, within CSW01_03630at 741.380 kb on + strand, within CSW01_03630at 741.437 kb on - strand, within CSW01_03630at 741.479 kb on - strand, within CSW01_03630at 741.479 kb on - strand, within CSW01_03630at 741.525 kb on + strand, within CSW01_03630at 741.537 kb on + strand, within CSW01_03630at 741.545 kb on - strand, within CSW01_03630at 741.550 kb on - strand, within CSW01_03630at 741.617 kb on + strand, within CSW01_03630at 741.661 kb on + strand, within CSW01_03630at 741.661 kb on + strand, within CSW01_03630at 741.669 kb on - strand, within CSW01_03630at 741.669 kb on - strand, within CSW01_03630at 741.692 kb on + strand, within CSW01_03630at 741.719 kb on + strand, within CSW01_03630at 741.737 kb on + strand, within CSW01_03630at 741.745 kb on - strand, within CSW01_03630at 741.752 kb on + strand, within CSW01_03630at 741.752 kb on + strand, within CSW01_03630at 741.752 kb on + strand, within CSW01_03630at 741.752 kb on - strand, within CSW01_03630at 741.760 kb on - strand, within CSW01_03630at 741.809 kb on + strand, within CSW01_03630at 741.817 kb on - strand, within CSW01_03630at 741.817 kb on - strand, within CSW01_03630at 741.862 kb on + strand, within CSW01_03630at 741.862 kb on + strand, within CSW01_03630at 741.885 kb on - strandat 741.890 kb on - strandat 741.951 kb on + strandat 741.959 kb on - strandat 741.976 kb on + strandat 741.984 kb on - strandat 741.991 kb on - strandat 741.994 kb on + strandat 742.040 kb on - strandat 742.040 kb on - strandat 742.374 kb on - strandat 742.374 kb on - strandat 742.448 kb on + strand, within CSW01_03635at 742.485 kb on + strand, within CSW01_03635at 742.519 kb on + strand, within CSW01_03635at 742.546 kb on - strand, within CSW01_03635at 742.546 kb on - strand, within CSW01_03635at 742.848 kb on + strand, within CSW01_03635at 742.848 kb on + strand, within CSW01_03635at 742.926 kb on + strand, within CSW01_03635at 742.926 kb on + strand, within CSW01_03635at 742.934 kb on - strand, within CSW01_03635at 742.934 kb on - strand, within CSW01_03635at 742.934 kb on - strand, within CSW01_03635at 742.940 kb on + strand, within CSW01_03635at 742.947 kb on + strand, within CSW01_03635at 742.948 kb on - strand, within CSW01_03635at 742.948 kb on - strand, within CSW01_03635at 742.948 kb on - strand, within CSW01_03635at 742.955 kb on - strand, within CSW01_03635at 742.955 kb on - strand, within CSW01_03635at 743.034 kb on - strand, within CSW01_03635at 743.220 kb on - strand, within CSW01_03635at 743.324 kb on - strandat 743.355 kb on + strandat 743.363 kb on - strandat 743.363 kb on - strandat 743.363 kb on - strandat 743.368 kb on - strandat 743.467 kb on - strandat 743.559 kb on - strand, within CSW01_03640at 743.641 kb on + strand, within CSW01_03640at 743.650 kb on - strand, within CSW01_03640at 743.698 kb on - strand, within CSW01_03640at 743.750 kb on - strand, within CSW01_03640at 743.767 kb on + strand, within CSW01_03640at 743.780 kb on + strand, within CSW01_03640at 743.788 kb on - strand, within CSW01_03640at 743.906 kb on + strand, within CSW01_03640at 743.934 kb on + strand, within CSW01_03640at 743.966 kb on - strand, within CSW01_03640at 743.973 kb on + strand, within CSW01_03640at 744.001 kb on - strand, within CSW01_03640at 744.031 kb on + strand, within CSW01_03640at 744.037 kb on - strand, within CSW01_03640at 744.039 kb on - strand, within CSW01_03640at 744.106 kb on + strand, within CSW01_03640at 744.162 kb on - strand, within CSW01_03640at 744.220 kb on + strand, within CSW01_03640at 744.233 kb on - strand, within CSW01_03640

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep2
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741,304 - CSW01_03630 0.56 -0.6
741,322 + CSW01_03630 0.57 +0.0
741,380 + CSW01_03630 0.61 -1.5
741,437 - CSW01_03630 0.64 +0.7
741,479 - CSW01_03630 0.67 +1.2
741,479 - CSW01_03630 0.67 +0.7
741,525 + CSW01_03630 0.69 +1.6
741,537 + CSW01_03630 0.70 +0.2
741,545 - CSW01_03630 0.71 -2.2
741,550 - CSW01_03630 0.71 +0.0
741,617 + CSW01_03630 0.75 +0.7
741,661 + CSW01_03630 0.78 -3.4
741,661 + CSW01_03630 0.78 -3.1
741,669 - CSW01_03630 0.78 -3.8
741,669 - CSW01_03630 0.78 +0.9
741,692 + CSW01_03630 0.79 -2.4
741,719 + CSW01_03630 0.81 -1.3
741,737 + CSW01_03630 0.82 +0.8
741,745 - CSW01_03630 0.83 +0.2
741,752 + CSW01_03630 0.83 +0.5
741,752 + CSW01_03630 0.83 +0.1
741,752 + CSW01_03630 0.83 -0.5
741,752 - CSW01_03630 0.83 -0.7
741,760 - CSW01_03630 0.83 -0.2
741,809 + CSW01_03630 0.86 +0.6
741,817 - CSW01_03630 0.87 +1.2
741,817 - CSW01_03630 0.87 +0.6
741,862 + CSW01_03630 0.90 +1.7
741,862 + CSW01_03630 0.90 +0.9
741,885 - -0.3
741,890 - +0.7
741,951 + -1.6
741,959 - +0.4
741,976 + +0.2
741,984 - -3.4
741,991 - -1.1
741,994 + -0.3
742,040 - +0.3
742,040 - +1.0
742,374 - -0.3
742,374 - -0.2
742,448 + CSW01_03635 0.16 +2.4
742,485 + CSW01_03635 0.19 +0.2
742,519 + CSW01_03635 0.22 -0.2
742,546 - CSW01_03635 0.25 -0.2
742,546 - CSW01_03635 0.25 -0.3
742,848 + CSW01_03635 0.53 -0.3
742,848 + CSW01_03635 0.53 -1.9
742,926 + CSW01_03635 0.60 -1.2
742,926 + CSW01_03635 0.60 -3.0
742,934 - CSW01_03635 0.61 -0.0
742,934 - CSW01_03635 0.61 -2.2
742,934 - CSW01_03635 0.61 +2.7
742,940 + CSW01_03635 0.62 +0.3
742,947 + CSW01_03635 0.62 +0.8
742,948 - CSW01_03635 0.62 +1.6
742,948 - CSW01_03635 0.62 +1.3
742,948 - CSW01_03635 0.62 +1.8
742,955 - CSW01_03635 0.63 +1.5
742,955 - CSW01_03635 0.63 +1.4
743,034 - CSW01_03635 0.70 -2.3
743,220 - CSW01_03635 0.88 -3.6
743,324 - +0.0
743,355 + +2.1
743,363 - +0.5
743,363 - -1.1
743,363 - +0.3
743,368 - +1.4
743,467 - -1.1
743,559 - CSW01_03640 0.17 +1.0
743,641 + CSW01_03640 0.25 -0.1
743,650 - CSW01_03640 0.25 -0.4
743,698 - CSW01_03640 0.30 -0.1
743,750 - CSW01_03640 0.34 +0.4
743,767 + CSW01_03640 0.36 -0.8
743,780 + CSW01_03640 0.37 +0.1
743,788 - CSW01_03640 0.38 +0.1
743,906 + CSW01_03640 0.48 +0.5
743,934 + CSW01_03640 0.51 +1.1
743,966 - CSW01_03640 0.53 -2.5
743,973 + CSW01_03640 0.54 -1.9
744,001 - CSW01_03640 0.56 +0.7
744,031 + CSW01_03640 0.59 -0.2
744,037 - CSW01_03640 0.60 -0.3
744,039 - CSW01_03640 0.60 +0.8
744,106 + CSW01_03640 0.66 -3.5
744,162 - CSW01_03640 0.71 -2.7
744,220 + CSW01_03640 0.76 +0.4
744,233 - CSW01_03640 0.77 -3.0

Or see this region's nucleotide sequence