Experiment: ICP3_phage_0.41_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_03290 and CSW01_03295 are separated by 283 nucleotides CSW01_03295 and CSW01_03300 are separated by 97 nucleotides
CSW01_03290: CSW01_03290 - glutamate-1-semialdehyde 2,1-aminomutase, at 663,009 to 664,307
_03290
CSW01_03295: CSW01_03295 - iron-sulfur cluster insertion protein ErpA, at 664,591 to 664,932
_03295
CSW01_03300: CSW01_03300 - efflux RND transporter periplasmic adaptor subunit, at 665,030 to 666,130
_03300
Position (kb) 664
665 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 664.474 kb on - strand at 664.474 kb on - strand at 664.986 kb on - strand at 665.054 kb on + strand at 665.127 kb on + strand at 665.132 kb on + strand at 665.135 kb on - strand at 665.140 kb on - strand, within CSW01_03300 at 665.140 kb on - strand, within CSW01_03300 at 665.248 kb on + strand, within CSW01_03300 at 665.451 kb on - strand, within CSW01_03300 at 665.451 kb on - strand, within CSW01_03300 at 665.527 kb on + strand, within CSW01_03300 at 665.527 kb on + strand, within CSW01_03300 at 665.527 kb on + strand, within CSW01_03300 at 665.527 kb on + strand, within CSW01_03300 at 665.532 kb on + strand, within CSW01_03300 at 665.532 kb on + strand, within CSW01_03300 at 665.532 kb on + strand, within CSW01_03300 at 665.535 kb on - strand, within CSW01_03300 at 665.535 kb on - strand, within CSW01_03300 at 665.537 kb on + strand, within CSW01_03300 at 665.537 kb on + strand, within CSW01_03300 at 665.537 kb on + strand, within CSW01_03300 at 665.540 kb on - strand, within CSW01_03300 at 665.540 kb on - strand, within CSW01_03300 at 665.545 kb on - strand, within CSW01_03300 at 665.595 kb on - strand, within CSW01_03300 at 665.601 kb on - strand, within CSW01_03300 at 665.698 kb on + strand, within CSW01_03300 at 665.785 kb on - strand, within CSW01_03300 at 665.873 kb on - strand, within CSW01_03300 at 665.881 kb on - strand, within CSW01_03300 at 665.884 kb on - strand, within CSW01_03300 at 665.890 kb on + strand, within CSW01_03300
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep2 remove 664,474 - +1.7 664,474 - -0.2 664,986 - +2.1 665,054 + +0.1 665,127 + +1.3 665,132 + -3.3 665,135 - +0.4 665,140 - CSW01_03300 0.10 -1.6 665,140 - CSW01_03300 0.10 -0.9 665,248 + CSW01_03300 0.20 +0.3 665,451 - CSW01_03300 0.38 -4.5 665,451 - CSW01_03300 0.38 -1.3 665,527 + CSW01_03300 0.45 -1.9 665,527 + CSW01_03300 0.45 -3.9 665,527 + CSW01_03300 0.45 -1.0 665,527 + CSW01_03300 0.45 +0.9 665,532 + CSW01_03300 0.46 +1.1 665,532 + CSW01_03300 0.46 +1.0 665,532 + CSW01_03300 0.46 -0.5 665,535 - CSW01_03300 0.46 -0.7 665,535 - CSW01_03300 0.46 -3.2 665,537 + CSW01_03300 0.46 +0.8 665,537 + CSW01_03300 0.46 +0.2 665,537 + CSW01_03300 0.46 +0.9 665,540 - CSW01_03300 0.46 +1.4 665,540 - CSW01_03300 0.46 +0.2 665,545 - CSW01_03300 0.47 -2.5 665,595 - CSW01_03300 0.51 +2.0 665,601 - CSW01_03300 0.52 +0.2 665,698 + CSW01_03300 0.61 +0.4 665,785 - CSW01_03300 0.69 -1.5 665,873 - CSW01_03300 0.77 -2.3 665,881 - CSW01_03300 0.77 -2.2 665,884 - CSW01_03300 0.78 +0.7 665,890 + CSW01_03300 0.78 -1.1
Or see this region's nucleotide sequence