Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02865

Experiment: ICP3_phage_0.41_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02855 and CSW01_02860 are separated by 10 nucleotidesCSW01_02860 and CSW01_02865 overlap by 4 nucleotidesCSW01_02865 and CSW01_02870 are separated by 166 nucleotidesCSW01_02870 and CSW01_02875 are separated by 133 nucleotides CSW01_02855: CSW01_02855 - sulfate/thiosulfate ABC transporter permease CysT, at 569,778 to 570,629 _02855 CSW01_02860: CSW01_02860 - sulfate ABC transporter permease subunit CysW, at 570,640 to 571,503 _02860 CSW01_02865: CSW01_02865 - sulfate/thiosulfate import ATP-binding protein CysA, at 571,500 to 572,630 _02865 CSW01_02870: CSW01_02870 - CinA family protein, at 572,797 to 573,303 _02870 CSW01_02875: CSW01_02875 - DNA recombination/repair protein RecA, at 573,437 to 574,501 _02875 Position (kb) 571 572 573Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 570.598 kb on + strandat 570.598 kb on + strandat 570.606 kb on - strandat 570.606 kb on - strandat 570.648 kb on + strandat 570.648 kb on + strandat 570.656 kb on - strandat 570.656 kb on - strandat 570.738 kb on - strand, within CSW01_02860at 570.774 kb on + strand, within CSW01_02860at 570.784 kb on - strand, within CSW01_02860at 570.805 kb on - strand, within CSW01_02860at 570.830 kb on + strand, within CSW01_02860at 570.888 kb on + strand, within CSW01_02860at 571.024 kb on + strand, within CSW01_02860at 571.025 kb on + strand, within CSW01_02860at 571.058 kb on + strand, within CSW01_02860at 571.078 kb on + strand, within CSW01_02860at 571.081 kb on - strand, within CSW01_02860at 571.208 kb on + strand, within CSW01_02860at 571.218 kb on + strand, within CSW01_02860at 571.226 kb on - strand, within CSW01_02860at 571.247 kb on - strand, within CSW01_02860at 571.273 kb on + strand, within CSW01_02860at 571.279 kb on - strand, within CSW01_02860at 571.281 kb on - strand, within CSW01_02860at 571.289 kb on - strand, within CSW01_02860at 571.319 kb on - strand, within CSW01_02860at 571.331 kb on - strand, within CSW01_02860at 571.381 kb on + strand, within CSW01_02860at 571.438 kb on + strandat 571.496 kb on + strandat 571.605 kb on - strandat 571.606 kb on - strandat 571.744 kb on + strand, within CSW01_02865at 571.786 kb on + strand, within CSW01_02865at 571.819 kb on + strand, within CSW01_02865at 571.825 kb on - strand, within CSW01_02865at 571.892 kb on + strand, within CSW01_02865at 571.907 kb on + strand, within CSW01_02865at 571.915 kb on - strand, within CSW01_02865at 571.915 kb on - strand, within CSW01_02865at 571.915 kb on - strand, within CSW01_02865at 571.968 kb on + strand, within CSW01_02865at 572.097 kb on + strand, within CSW01_02865at 572.097 kb on + strand, within CSW01_02865at 572.098 kb on + strand, within CSW01_02865at 572.099 kb on - strand, within CSW01_02865at 572.106 kb on + strand, within CSW01_02865at 572.106 kb on - strand, within CSW01_02865at 572.168 kb on + strand, within CSW01_02865at 572.168 kb on + strand, within CSW01_02865at 572.176 kb on - strand, within CSW01_02865at 572.176 kb on - strand, within CSW01_02865at 572.178 kb on + strand, within CSW01_02865at 572.225 kb on + strand, within CSW01_02865at 572.233 kb on - strand, within CSW01_02865at 572.263 kb on - strand, within CSW01_02865at 572.337 kb on - strand, within CSW01_02865at 572.337 kb on - strand, within CSW01_02865at 572.343 kb on - strand, within CSW01_02865at 572.371 kb on - strand, within CSW01_02865at 572.378 kb on - strand, within CSW01_02865at 572.407 kb on + strand, within CSW01_02865at 572.407 kb on + strand, within CSW01_02865at 572.415 kb on - strand, within CSW01_02865at 572.415 kb on - strand, within CSW01_02865at 572.424 kb on + strand, within CSW01_02865at 572.432 kb on - strand, within CSW01_02865at 572.449 kb on + strand, within CSW01_02865at 572.449 kb on + strand, within CSW01_02865at 572.449 kb on + strand, within CSW01_02865at 572.457 kb on - strand, within CSW01_02865at 572.457 kb on - strand, within CSW01_02865at 572.457 kb on - strand, within CSW01_02865at 572.457 kb on - strand, within CSW01_02865at 572.514 kb on + strand, within CSW01_02865at 572.522 kb on - strandat 572.562 kb on + strandat 572.580 kb on + strandat 572.580 kb on + strandat 572.610 kb on + strandat 572.618 kb on - strandat 572.646 kb on + strandat 572.826 kb on + strandat 572.834 kb on - strandat 572.857 kb on + strand, within CSW01_02870at 572.865 kb on - strand, within CSW01_02870at 572.882 kb on - strand, within CSW01_02870at 572.890 kb on + strand, within CSW01_02870at 572.890 kb on + strand, within CSW01_02870at 572.905 kb on - strand, within CSW01_02870at 572.933 kb on + strand, within CSW01_02870at 572.995 kb on - strand, within CSW01_02870at 573.043 kb on - strand, within CSW01_02870at 573.043 kb on - strand, within CSW01_02870at 573.053 kb on - strand, within CSW01_02870at 573.075 kb on + strand, within CSW01_02870at 573.077 kb on - strand, within CSW01_02870at 573.088 kb on + strand, within CSW01_02870at 573.169 kb on + strand, within CSW01_02870at 573.169 kb on + strand, within CSW01_02870at 573.169 kb on + strand, within CSW01_02870at 573.177 kb on - strand, within CSW01_02870at 573.177 kb on - strand, within CSW01_02870at 573.177 kb on - strand, within CSW01_02870at 573.177 kb on - strand, within CSW01_02870at 573.183 kb on - strand, within CSW01_02870at 573.185 kb on + strand, within CSW01_02870at 573.200 kb on + strand, within CSW01_02870at 573.201 kb on + strand, within CSW01_02870at 573.202 kb on - strand, within CSW01_02870at 573.235 kb on + strand, within CSW01_02870at 573.244 kb on - strand, within CSW01_02870at 573.288 kb on - strandat 573.367 kb on + strandat 573.395 kb on - strandat 573.410 kb on + strandat 573.432 kb on + strandat 573.511 kb on - strandat 573.521 kb on + strandat 573.529 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep2
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570,598 + -4.1
570,598 + -1.1
570,606 - +0.8
570,606 - +2.2
570,648 + -0.3
570,648 + +1.1
570,656 - +0.8
570,656 - +0.8
570,738 - CSW01_02860 0.11 +2.3
570,774 + CSW01_02860 0.16 -2.9
570,784 - CSW01_02860 0.17 +0.6
570,805 - CSW01_02860 0.19 -3.5
570,830 + CSW01_02860 0.22 -1.6
570,888 + CSW01_02860 0.29 -0.4
571,024 + CSW01_02860 0.44 -3.1
571,025 + CSW01_02860 0.45 -3.4
571,058 + CSW01_02860 0.48 +0.6
571,078 + CSW01_02860 0.51 +0.6
571,081 - CSW01_02860 0.51 +0.8
571,208 + CSW01_02860 0.66 +1.8
571,218 + CSW01_02860 0.67 +1.5
571,226 - CSW01_02860 0.68 +1.2
571,247 - CSW01_02860 0.70 +1.2
571,273 + CSW01_02860 0.73 +1.4
571,279 - CSW01_02860 0.74 -0.2
571,281 - CSW01_02860 0.74 -0.8
571,289 - CSW01_02860 0.75 -3.8
571,319 - CSW01_02860 0.79 -0.1
571,331 - CSW01_02860 0.80 -0.7
571,381 + CSW01_02860 0.86 +3.3
571,438 + +0.7
571,496 + -1.0
571,605 - +0.3
571,606 - +1.2
571,744 + CSW01_02865 0.22 +3.2
571,786 + CSW01_02865 0.25 -3.2
571,819 + CSW01_02865 0.28 +0.3
571,825 - CSW01_02865 0.29 +1.1
571,892 + CSW01_02865 0.35 +0.3
571,907 + CSW01_02865 0.36 +0.9
571,915 - CSW01_02865 0.37 +0.7
571,915 - CSW01_02865 0.37 -0.8
571,915 - CSW01_02865 0.37 +0.9
571,968 + CSW01_02865 0.41 -2.7
572,097 + CSW01_02865 0.53 +0.8
572,097 + CSW01_02865 0.53 -2.1
572,098 + CSW01_02865 0.53 +0.5
572,099 - CSW01_02865 0.53 -3.1
572,106 + CSW01_02865 0.54 +1.2
572,106 - CSW01_02865 0.54 -0.5
572,168 + CSW01_02865 0.59 +1.2
572,168 + CSW01_02865 0.59 -0.6
572,176 - CSW01_02865 0.60 +0.5
572,176 - CSW01_02865 0.60 +1.4
572,178 + CSW01_02865 0.60 -1.1
572,225 + CSW01_02865 0.64 -3.1
572,233 - CSW01_02865 0.65 +0.3
572,263 - CSW01_02865 0.67 -1.0
572,337 - CSW01_02865 0.74 +3.8
572,337 - CSW01_02865 0.74 +0.6
572,343 - CSW01_02865 0.75 +2.0
572,371 - CSW01_02865 0.77 +1.1
572,378 - CSW01_02865 0.78 -1.9
572,407 + CSW01_02865 0.80 -1.1
572,407 + CSW01_02865 0.80 -1.8
572,415 - CSW01_02865 0.81 +0.6
572,415 - CSW01_02865 0.81 +4.3
572,424 + CSW01_02865 0.82 +0.5
572,432 - CSW01_02865 0.82 +0.2
572,449 + CSW01_02865 0.84 -1.8
572,449 + CSW01_02865 0.84 +0.7
572,449 + CSW01_02865 0.84 +0.8
572,457 - CSW01_02865 0.85 +1.1
572,457 - CSW01_02865 0.85 +0.0
572,457 - CSW01_02865 0.85 +0.2
572,457 - CSW01_02865 0.85 +2.3
572,514 + CSW01_02865 0.90 +1.6
572,522 - -3.1
572,562 + +0.5
572,580 + +0.3
572,580 + -0.4
572,610 + +0.9
572,618 - +1.0
572,646 + +0.6
572,826 + +0.3
572,834 - -2.5
572,857 + CSW01_02870 0.12 +0.9
572,865 - CSW01_02870 0.13 +0.2
572,882 - CSW01_02870 0.17 -0.1
572,890 + CSW01_02870 0.18 -1.9
572,890 + CSW01_02870 0.18 -2.2
572,905 - CSW01_02870 0.21 -2.8
572,933 + CSW01_02870 0.27 +0.2
572,995 - CSW01_02870 0.39 -0.4
573,043 - CSW01_02870 0.49 +0.4
573,043 - CSW01_02870 0.49 -2.4
573,053 - CSW01_02870 0.50 -0.7
573,075 + CSW01_02870 0.55 -2.2
573,077 - CSW01_02870 0.55 +0.9
573,088 + CSW01_02870 0.57 -0.0
573,169 + CSW01_02870 0.73 +0.8
573,169 + CSW01_02870 0.73 -2.9
573,169 + CSW01_02870 0.73 -1.1
573,177 - CSW01_02870 0.75 +0.6
573,177 - CSW01_02870 0.75 -1.8
573,177 - CSW01_02870 0.75 -2.4
573,177 - CSW01_02870 0.75 -2.7
573,183 - CSW01_02870 0.76 -2.9
573,185 + CSW01_02870 0.77 -1.8
573,200 + CSW01_02870 0.79 -0.5
573,201 + CSW01_02870 0.80 +0.7
573,202 - CSW01_02870 0.80 +0.7
573,235 + CSW01_02870 0.86 -1.1
573,244 - CSW01_02870 0.88 +0.9
573,288 - +0.9
573,367 + -1.5
573,395 - -0.9
573,410 + -3.7
573,432 + -3.1
573,511 - -3.1
573,521 + -0.5
573,529 - -1.0

Or see this region's nucleotide sequence