Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02700

Experiment: ICP3_phage_0.41_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02685 and CSW01_02690 are separated by 3 nucleotidesCSW01_02690 and CSW01_02695 are separated by 50 nucleotidesCSW01_02695 and CSW01_02700 overlap by 10 nucleotidesCSW01_02700 and CSW01_02705 are separated by 404 nucleotides CSW01_02685: CSW01_02685 - hypothetical protein, at 537,163 to 537,339 _02685 CSW01_02690: CSW01_02690 - DUF2787 domain-containing protein, at 537,343 to 537,786 _02690 CSW01_02695: CSW01_02695 - DUF2787 domain-containing protein, at 537,837 to 538,280 _02695 CSW01_02700: CSW01_02700 - hypothetical protein, at 538,271 to 538,744 _02700 CSW01_02705: CSW01_02705 - transposase, at 539,149 to 539,561 _02705 Position (kb) 538 539Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 537.286 kb on - strand, within CSW01_02685at 537.335 kb on - strandat 537.343 kb on - strandat 537.343 kb on - strandat 537.353 kb on + strandat 537.355 kb on + strandat 537.527 kb on - strand, within CSW01_02690at 537.561 kb on + strand, within CSW01_02690at 537.569 kb on - strand, within CSW01_02690at 537.581 kb on + strand, within CSW01_02690at 537.612 kb on + strand, within CSW01_02690at 537.630 kb on - strand, within CSW01_02690at 537.684 kb on + strand, within CSW01_02690at 537.684 kb on + strand, within CSW01_02690at 537.692 kb on - strand, within CSW01_02690at 537.705 kb on - strand, within CSW01_02690at 537.757 kb on + strandat 537.760 kb on - strandat 537.836 kb on - strandat 537.856 kb on - strandat 537.953 kb on + strand, within CSW01_02695at 537.953 kb on + strand, within CSW01_02695at 537.961 kb on - strand, within CSW01_02695at 537.961 kb on - strand, within CSW01_02695at 538.022 kb on + strand, within CSW01_02695at 538.032 kb on + strand, within CSW01_02695at 538.035 kb on - strand, within CSW01_02695at 538.056 kb on + strand, within CSW01_02695at 538.062 kb on + strand, within CSW01_02695at 538.067 kb on + strand, within CSW01_02695at 538.079 kb on + strand, within CSW01_02695at 538.096 kb on + strand, within CSW01_02695at 538.096 kb on + strand, within CSW01_02695at 538.104 kb on - strand, within CSW01_02695at 538.118 kb on + strand, within CSW01_02695at 538.118 kb on + strand, within CSW01_02695at 538.119 kb on + strand, within CSW01_02695at 538.255 kb on + strandat 538.255 kb on + strandat 538.255 kb on + strandat 538.263 kb on - strandat 538.263 kb on - strandat 538.263 kb on - strandat 538.263 kb on - strandat 538.278 kb on - strandat 538.312 kb on - strandat 538.312 kb on - strandat 538.318 kb on + strandat 538.322 kb on - strand, within CSW01_02700at 538.398 kb on + strand, within CSW01_02700at 538.446 kb on - strand, within CSW01_02700at 538.483 kb on + strand, within CSW01_02700at 538.483 kb on + strand, within CSW01_02700at 538.483 kb on + strand, within CSW01_02700at 538.509 kb on - strand, within CSW01_02700at 538.517 kb on - strand, within CSW01_02700at 538.565 kb on + strand, within CSW01_02700at 538.565 kb on + strand, within CSW01_02700at 538.565 kb on + strand, within CSW01_02700at 538.573 kb on - strand, within CSW01_02700at 538.579 kb on - strand, within CSW01_02700at 538.579 kb on - strand, within CSW01_02700at 538.589 kb on + strand, within CSW01_02700at 538.631 kb on + strand, within CSW01_02700at 538.631 kb on + strand, within CSW01_02700at 538.631 kb on + strand, within CSW01_02700at 538.631 kb on + strand, within CSW01_02700at 538.636 kb on + strand, within CSW01_02700at 538.639 kb on - strand, within CSW01_02700at 538.639 kb on - strand, within CSW01_02700at 538.639 kb on - strand, within CSW01_02700at 538.690 kb on - strand, within CSW01_02700at 538.772 kb on + strandat 538.899 kb on + strandat 538.985 kb on - strandat 538.985 kb on - strandat 538.985 kb on - strandat 538.985 kb on - strandat 538.991 kb on + strandat 538.999 kb on - strandat 538.999 kb on - strandat 539.000 kb on - strandat 539.067 kb on + strandat 539.067 kb on + strandat 539.067 kb on + strandat 539.067 kb on + strandat 539.067 kb on + strandat 539.067 kb on + strandat 539.067 kb on + strandat 539.067 kb on + strandat 539.067 kb on + strandat 539.067 kb on + strandat 539.071 kb on - strandat 539.075 kb on - strandat 539.075 kb on - strandat 539.075 kb on - strandat 539.075 kb on - strandat 539.075 kb on - strandat 539.089 kb on + strandat 539.104 kb on - strandat 539.167 kb on - strandat 539.178 kb on - strandat 539.183 kb on - strandat 539.252 kb on + strand, within CSW01_02705at 539.254 kb on + strand, within CSW01_02705at 539.270 kb on - strand, within CSW01_02705at 539.278 kb on + strand, within CSW01_02705at 539.335 kb on + strand, within CSW01_02705at 539.343 kb on - strand, within CSW01_02705at 539.364 kb on - strand, within CSW01_02705at 539.364 kb on - strand, within CSW01_02705at 539.364 kb on - strand, within CSW01_02705at 539.364 kb on - strand, within CSW01_02705at 539.370 kb on + strand, within CSW01_02705at 539.392 kb on - strand, within CSW01_02705at 539.414 kb on + strand, within CSW01_02705at 539.430 kb on + strand, within CSW01_02705at 539.438 kb on - strand, within CSW01_02705at 539.458 kb on - strand, within CSW01_02705at 539.460 kb on + strand, within CSW01_02705at 539.460 kb on + strand, within CSW01_02705at 539.460 kb on + strand, within CSW01_02705at 539.468 kb on - strand, within CSW01_02705at 539.474 kb on - strand, within CSW01_02705at 539.504 kb on + strand, within CSW01_02705at 539.553 kb on + strandat 539.553 kb on + strandat 539.567 kb on - strandat 539.592 kb on - strandat 539.632 kb on + strandat 539.643 kb on + strandat 539.643 kb on + strandat 539.643 kb on + strandat 539.675 kb on + strandat 539.680 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep2
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537,286 - CSW01_02685 0.69 +0.2
537,335 - -2.4
537,343 - -1.8
537,343 - -1.3
537,353 + -2.5
537,355 + -0.7
537,527 - CSW01_02690 0.41 -1.6
537,561 + CSW01_02690 0.49 -1.7
537,569 - CSW01_02690 0.51 +0.2
537,581 + CSW01_02690 0.54 -2.2
537,612 + CSW01_02690 0.61 -0.9
537,630 - CSW01_02690 0.65 -0.3
537,684 + CSW01_02690 0.77 -1.8
537,684 + CSW01_02690 0.77 -0.4
537,692 - CSW01_02690 0.79 -0.4
537,705 - CSW01_02690 0.82 +0.9
537,757 + -1.2
537,760 - -0.9
537,836 - +0.4
537,856 - +0.8
537,953 + CSW01_02695 0.26 -0.4
537,953 + CSW01_02695 0.26 -4.9
537,961 - CSW01_02695 0.28 +0.4
537,961 - CSW01_02695 0.28 -1.5
538,022 + CSW01_02695 0.42 +0.1
538,032 + CSW01_02695 0.44 -1.3
538,035 - CSW01_02695 0.45 -2.4
538,056 + CSW01_02695 0.49 -1.6
538,062 + CSW01_02695 0.51 +2.0
538,067 + CSW01_02695 0.52 -0.3
538,079 + CSW01_02695 0.55 +1.0
538,096 + CSW01_02695 0.58 +0.4
538,096 + CSW01_02695 0.58 -2.1
538,104 - CSW01_02695 0.60 +0.3
538,118 + CSW01_02695 0.63 -0.4
538,118 + CSW01_02695 0.63 +0.1
538,119 + CSW01_02695 0.64 -1.0
538,255 + -3.4
538,255 + -1.9
538,255 + +0.6
538,263 - +1.5
538,263 - -0.1
538,263 - -0.4
538,263 - +1.8
538,278 - +2.3
538,312 - +1.1
538,312 - +0.3
538,318 + +1.5
538,322 - CSW01_02700 0.11 -0.2
538,398 + CSW01_02700 0.27 -3.6
538,446 - CSW01_02700 0.37 +1.3
538,483 + CSW01_02700 0.45 +0.8
538,483 + CSW01_02700 0.45 -0.0
538,483 + CSW01_02700 0.45 -1.3
538,509 - CSW01_02700 0.50 -3.6
538,517 - CSW01_02700 0.52 -1.2
538,565 + CSW01_02700 0.62 -2.1
538,565 + CSW01_02700 0.62 -1.7
538,565 + CSW01_02700 0.62 +0.7
538,573 - CSW01_02700 0.64 +0.8
538,579 - CSW01_02700 0.65 -0.2
538,579 - CSW01_02700 0.65 -4.1
538,589 + CSW01_02700 0.67 -3.3
538,631 + CSW01_02700 0.76 -0.6
538,631 + CSW01_02700 0.76 +1.2
538,631 + CSW01_02700 0.76 -3.1
538,631 + CSW01_02700 0.76 +0.1
538,636 + CSW01_02700 0.77 -1.6
538,639 - CSW01_02700 0.78 -3.2
538,639 - CSW01_02700 0.78 +1.7
538,639 - CSW01_02700 0.78 -4.3
538,690 - CSW01_02700 0.88 -1.7
538,772 + +0.6
538,899 + +0.9
538,985 - -0.8
538,985 - +1.9
538,985 - +0.8
538,985 - -0.1
538,991 + +0.5
538,999 - -3.1
538,999 - +0.4
539,000 - +0.4
539,067 + -0.7
539,067 + +1.4
539,067 + -2.9
539,067 + -1.7
539,067 + +0.5
539,067 + +0.1
539,067 + +0.6
539,067 + +2.6
539,067 + -2.2
539,067 + -0.2
539,071 - -0.2
539,075 - -0.7
539,075 - +0.0
539,075 - -0.7
539,075 - +0.8
539,075 - +0.3
539,089 + -1.8
539,104 - +0.5
539,167 - +0.7
539,178 - +0.4
539,183 - +2.6
539,252 + CSW01_02705 0.25 -2.3
539,254 + CSW01_02705 0.25 +1.7
539,270 - CSW01_02705 0.29 +0.1
539,278 + CSW01_02705 0.31 -1.9
539,335 + CSW01_02705 0.45 -0.5
539,343 - CSW01_02705 0.47 -0.1
539,364 - CSW01_02705 0.52 +0.8
539,364 - CSW01_02705 0.52 +1.1
539,364 - CSW01_02705 0.52 +0.5
539,364 - CSW01_02705 0.52 -0.3
539,370 + CSW01_02705 0.54 +0.9
539,392 - CSW01_02705 0.59 -0.1
539,414 + CSW01_02705 0.64 +0.8
539,430 + CSW01_02705 0.68 -3.8
539,438 - CSW01_02705 0.70 +2.4
539,458 - CSW01_02705 0.75 +0.3
539,460 + CSW01_02705 0.75 -3.2
539,460 + CSW01_02705 0.75 -1.7
539,460 + CSW01_02705 0.75 -2.8
539,468 - CSW01_02705 0.77 -2.3
539,474 - CSW01_02705 0.79 -0.4
539,504 + CSW01_02705 0.86 -3.9
539,553 + -0.1
539,553 + +0.5
539,567 - -0.1
539,592 - +0.5
539,632 + +0.3
539,643 + +1.5
539,643 + -0.1
539,643 + -3.5
539,675 + -3.5
539,680 + -0.1

Or see this region's nucleotide sequence