Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02480

Experiment: ICP3_phage_0.41_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02475 and CSW01_02480 are separated by 37 nucleotidesCSW01_02480 and CSW01_02485 are separated by 80 nucleotidesCSW01_02485 and CSW01_02490 are separated by 35 nucleotides CSW01_02475: CSW01_02475 - tyrosine--tRNA ligase, at 493,194 to 494,498 _02475 CSW01_02480: CSW01_02480 - Holliday junction resolvase RuvX, at 494,536 to 494,958 _02480 CSW01_02485: CSW01_02485 - YqgE/AlgH family protein, at 495,039 to 495,602 _02485 CSW01_02490: CSW01_02490 - glutathione synthetase, at 495,638 to 496,594 _02490 Position (kb) 494 495Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 493.552 kb on - strand, within CSW01_02475at 493.568 kb on - strand, within CSW01_02475at 493.589 kb on + strand, within CSW01_02475at 493.692 kb on - strand, within CSW01_02475at 493.710 kb on + strand, within CSW01_02475at 493.710 kb on + strand, within CSW01_02475at 493.723 kb on - strand, within CSW01_02475at 493.736 kb on + strand, within CSW01_02475at 493.736 kb on + strand, within CSW01_02475at 493.736 kb on + strand, within CSW01_02475at 493.755 kb on + strand, within CSW01_02475at 493.780 kb on - strand, within CSW01_02475at 493.805 kb on - strand, within CSW01_02475at 493.837 kb on + strand, within CSW01_02475at 493.840 kb on + strand, within CSW01_02475at 493.848 kb on - strand, within CSW01_02475at 493.859 kb on + strand, within CSW01_02475at 493.867 kb on + strand, within CSW01_02475at 493.867 kb on + strand, within CSW01_02475at 493.867 kb on + strand, within CSW01_02475at 493.867 kb on + strand, within CSW01_02475at 493.867 kb on + strand, within CSW01_02475at 493.867 kb on + strand, within CSW01_02475at 493.867 kb on + strand, within CSW01_02475at 493.867 kb on + strand, within CSW01_02475at 493.867 kb on + strand, within CSW01_02475at 493.874 kb on + strand, within CSW01_02475at 493.875 kb on - strand, within CSW01_02475at 493.875 kb on - strand, within CSW01_02475at 493.875 kb on - strand, within CSW01_02475at 493.875 kb on - strand, within CSW01_02475at 493.875 kb on - strand, within CSW01_02475at 493.875 kb on - strand, within CSW01_02475at 493.875 kb on - strand, within CSW01_02475at 493.875 kb on - strand, within CSW01_02475at 493.875 kb on - strand, within CSW01_02475at 493.875 kb on - strand, within CSW01_02475at 493.875 kb on - strand, within CSW01_02475at 493.882 kb on + strand, within CSW01_02475at 493.890 kb on - strand, within CSW01_02475at 493.890 kb on - strand, within CSW01_02475at 493.890 kb on - strand, within CSW01_02475at 493.890 kb on - strand, within CSW01_02475at 493.947 kb on - strand, within CSW01_02475at 494.019 kb on + strand, within CSW01_02475at 494.045 kb on - strand, within CSW01_02475at 494.051 kb on + strand, within CSW01_02475at 494.141 kb on - strand, within CSW01_02475at 494.143 kb on + strand, within CSW01_02475at 494.155 kb on + strand, within CSW01_02475at 494.159 kb on + strand, within CSW01_02475at 494.216 kb on - strand, within CSW01_02475at 494.266 kb on + strand, within CSW01_02475at 494.311 kb on + strand, within CSW01_02475at 494.316 kb on + strand, within CSW01_02475at 494.316 kb on + strand, within CSW01_02475at 494.326 kb on + strand, within CSW01_02475at 494.399 kb on + strandat 494.413 kb on + strandat 494.418 kb on + strandat 494.493 kb on - strandat 494.515 kb on - strandat 494.542 kb on - strandat 495.068 kb on + strandat 495.068 kb on + strandat 495.068 kb on + strandat 495.071 kb on - strandat 495.100 kb on - strand, within CSW01_02485at 495.157 kb on - strand, within CSW01_02485at 495.160 kb on + strand, within CSW01_02485at 495.211 kb on + strand, within CSW01_02485at 495.255 kb on + strand, within CSW01_02485at 495.255 kb on + strand, within CSW01_02485at 495.263 kb on - strand, within CSW01_02485at 495.263 kb on - strand, within CSW01_02485at 495.305 kb on - strand, within CSW01_02485at 495.331 kb on - strand, within CSW01_02485at 495.350 kb on - strand, within CSW01_02485at 495.487 kb on - strand, within CSW01_02485at 495.516 kb on - strand, within CSW01_02485at 495.596 kb on + strandat 495.596 kb on + strandat 495.596 kb on + strandat 495.596 kb on + strandat 495.596 kb on + strandat 495.604 kb on - strandat 495.604 kb on - strandat 495.604 kb on - strandat 495.604 kb on - strandat 495.604 kb on - strandat 495.614 kb on - strandat 495.622 kb on - strandat 495.625 kb on + strandat 495.644 kb on - strandat 495.672 kb on + strandat 495.701 kb on + strandat 495.711 kb on + strandat 495.890 kb on - strand, within CSW01_02490at 495.944 kb on - strand, within CSW01_02490

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep2
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493,552 - CSW01_02475 0.27 +1.2
493,568 - CSW01_02475 0.29 -3.0
493,589 + CSW01_02475 0.30 -0.7
493,692 - CSW01_02475 0.38 -0.4
493,710 + CSW01_02475 0.40 +0.2
493,710 + CSW01_02475 0.40 +0.8
493,723 - CSW01_02475 0.41 +1.9
493,736 + CSW01_02475 0.42 +0.7
493,736 + CSW01_02475 0.42 +0.1
493,736 + CSW01_02475 0.42 +0.2
493,755 + CSW01_02475 0.43 -1.7
493,780 - CSW01_02475 0.45 -0.5
493,805 - CSW01_02475 0.47 +0.1
493,837 + CSW01_02475 0.49 -1.3
493,840 + CSW01_02475 0.50 +0.1
493,848 - CSW01_02475 0.50 +2.3
493,859 + CSW01_02475 0.51 +1.2
493,867 + CSW01_02475 0.52 +0.8
493,867 + CSW01_02475 0.52 +2.3
493,867 + CSW01_02475 0.52 +0.5
493,867 + CSW01_02475 0.52 +0.0
493,867 + CSW01_02475 0.52 +0.9
493,867 + CSW01_02475 0.52 -3.0
493,867 + CSW01_02475 0.52 -0.4
493,867 + CSW01_02475 0.52 +0.5
493,867 + CSW01_02475 0.52 +0.2
493,874 + CSW01_02475 0.52 -0.8
493,875 - CSW01_02475 0.52 -2.6
493,875 - CSW01_02475 0.52 +1.2
493,875 - CSW01_02475 0.52 -1.1
493,875 - CSW01_02475 0.52 -4.7
493,875 - CSW01_02475 0.52 -0.1
493,875 - CSW01_02475 0.52 -0.1
493,875 - CSW01_02475 0.52 -0.8
493,875 - CSW01_02475 0.52 +1.3
493,875 - CSW01_02475 0.52 -0.6
493,875 - CSW01_02475 0.52 +0.9
493,875 - CSW01_02475 0.52 +0.9
493,882 + CSW01_02475 0.53 -1.4
493,890 - CSW01_02475 0.53 -0.4
493,890 - CSW01_02475 0.53 +0.4
493,890 - CSW01_02475 0.53 +1.6
493,890 - CSW01_02475 0.53 -3.6
493,947 - CSW01_02475 0.58 +0.2
494,019 + CSW01_02475 0.63 +0.1
494,045 - CSW01_02475 0.65 -1.1
494,051 + CSW01_02475 0.66 +0.8
494,141 - CSW01_02475 0.73 -0.2
494,143 + CSW01_02475 0.73 -1.0
494,155 + CSW01_02475 0.74 -4.1
494,159 + CSW01_02475 0.74 +0.6
494,216 - CSW01_02475 0.78 +0.0
494,266 + CSW01_02475 0.82 -1.0
494,311 + CSW01_02475 0.86 -2.5
494,316 + CSW01_02475 0.86 +0.5
494,316 + CSW01_02475 0.86 -0.7
494,326 + CSW01_02475 0.87 -1.3
494,399 + +1.5
494,413 + +1.2
494,418 + +0.7
494,493 - +0.6
494,515 - -2.2
494,542 - +0.1
495,068 + -1.8
495,068 + -4.2
495,068 + -2.6
495,071 - -0.5
495,100 - CSW01_02485 0.11 -0.3
495,157 - CSW01_02485 0.21 +1.0
495,160 + CSW01_02485 0.21 -3.1
495,211 + CSW01_02485 0.30 +0.6
495,255 + CSW01_02485 0.38 -1.7
495,255 + CSW01_02485 0.38 -0.9
495,263 - CSW01_02485 0.40 -0.3
495,263 - CSW01_02485 0.40 +0.7
495,305 - CSW01_02485 0.47 +0.6
495,331 - CSW01_02485 0.52 -0.1
495,350 - CSW01_02485 0.55 +0.3
495,487 - CSW01_02485 0.79 -1.7
495,516 - CSW01_02485 0.85 -0.9
495,596 + +1.2
495,596 + +1.1
495,596 + -0.2
495,596 + -2.2
495,596 + -1.4
495,604 - -0.0
495,604 - +0.1
495,604 - -0.8
495,604 - +0.1
495,604 - -4.2
495,614 - +1.2
495,622 - -1.4
495,625 + -3.0
495,644 - +0.1
495,672 + -1.8
495,701 + -3.7
495,711 + -2.9
495,890 - CSW01_02490 0.26 -1.1
495,944 - CSW01_02490 0.32 -1.8

Or see this region's nucleotide sequence