Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02220

Experiment: ICP3_phage_0.41_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02210 and CSW01_02215 are separated by 8 nucleotidesCSW01_02215 and CSW01_02220 overlap by 1 nucleotidesCSW01_02220 and CSW01_02225 are separated by 95 nucleotides CSW01_02210: CSW01_02210 - DUF3971 domain-containing protein, at 445,429 to 449,304 _02210 CSW01_02215: CSW01_02215 - carbon-nitrogen hydrolase family protein, at 449,313 to 450,140 _02215 CSW01_02220: CSW01_02220 - metalloprotease TldD, at 450,140 to 451,585 _02220 CSW01_02225: CSW01_02225 - arginine deiminase, at 451,681 to 452,904 _02225 Position (kb) 450 451 452Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 449.156 kb on + strandat 449.174 kb on - strandat 449.320 kb on + strandat 449.320 kb on + strandat 449.390 kb on + strandat 449.395 kb on + strandat 449.502 kb on + strand, within CSW01_02215at 449.510 kb on - strand, within CSW01_02215at 449.510 kb on - strand, within CSW01_02215at 449.510 kb on - strand, within CSW01_02215at 449.510 kb on - strand, within CSW01_02215at 449.546 kb on - strand, within CSW01_02215at 449.586 kb on - strand, within CSW01_02215at 449.598 kb on + strand, within CSW01_02215at 449.609 kb on - strand, within CSW01_02215at 449.609 kb on - strand, within CSW01_02215at 449.611 kb on - strand, within CSW01_02215at 449.646 kb on + strand, within CSW01_02215at 449.662 kb on - strand, within CSW01_02215at 449.678 kb on + strand, within CSW01_02215at 449.704 kb on + strand, within CSW01_02215at 449.704 kb on + strand, within CSW01_02215at 449.704 kb on + strand, within CSW01_02215at 449.704 kb on + strand, within CSW01_02215at 449.704 kb on + strand, within CSW01_02215at 449.704 kb on + strand, within CSW01_02215at 449.712 kb on - strand, within CSW01_02215at 449.712 kb on - strand, within CSW01_02215at 449.712 kb on - strand, within CSW01_02215at 449.721 kb on + strand, within CSW01_02215at 449.724 kb on - strand, within CSW01_02215at 449.734 kb on + strand, within CSW01_02215at 449.734 kb on + strand, within CSW01_02215at 449.734 kb on + strand, within CSW01_02215at 449.734 kb on + strand, within CSW01_02215at 449.742 kb on - strand, within CSW01_02215at 449.742 kb on - strand, within CSW01_02215at 449.744 kb on + strand, within CSW01_02215at 449.770 kb on + strand, within CSW01_02215at 449.802 kb on + strand, within CSW01_02215at 449.802 kb on + strand, within CSW01_02215at 449.802 kb on + strand, within CSW01_02215at 449.810 kb on + strand, within CSW01_02215at 449.810 kb on - strand, within CSW01_02215at 449.833 kb on - strand, within CSW01_02215at 449.862 kb on + strand, within CSW01_02215at 449.862 kb on + strand, within CSW01_02215at 449.862 kb on + strand, within CSW01_02215at 449.888 kb on - strand, within CSW01_02215at 449.907 kb on + strand, within CSW01_02215at 450.035 kb on - strand, within CSW01_02215at 450.096 kb on - strandat 450.147 kb on - strandat 450.172 kb on - strandat 450.196 kb on + strandat 450.199 kb on - strandat 450.199 kb on - strandat 450.204 kb on - strandat 450.222 kb on - strandat 450.402 kb on + strand, within CSW01_02220at 450.402 kb on + strand, within CSW01_02220at 450.402 kb on + strand, within CSW01_02220at 450.402 kb on + strand, within CSW01_02220at 450.402 kb on + strand, within CSW01_02220at 450.410 kb on - strand, within CSW01_02220at 450.410 kb on - strand, within CSW01_02220at 450.410 kb on - strand, within CSW01_02220at 450.410 kb on - strand, within CSW01_02220at 450.410 kb on - strand, within CSW01_02220at 450.410 kb on - strand, within CSW01_02220at 450.410 kb on - strand, within CSW01_02220at 450.410 kb on - strand, within CSW01_02220at 450.410 kb on - strand, within CSW01_02220at 450.420 kb on - strand, within CSW01_02220at 450.446 kb on + strand, within CSW01_02220at 450.469 kb on - strand, within CSW01_02220at 450.469 kb on - strand, within CSW01_02220at 450.493 kb on + strand, within CSW01_02220at 450.594 kb on + strand, within CSW01_02220at 450.621 kb on - strand, within CSW01_02220at 450.666 kb on - strand, within CSW01_02220at 450.668 kb on + strand, within CSW01_02220at 450.858 kb on - strand, within CSW01_02220at 450.936 kb on - strand, within CSW01_02220at 451.018 kb on + strand, within CSW01_02220at 451.026 kb on - strand, within CSW01_02220at 451.042 kb on + strand, within CSW01_02220at 451.062 kb on + strand, within CSW01_02220at 451.064 kb on + strand, within CSW01_02220at 451.099 kb on - strand, within CSW01_02220at 451.130 kb on + strand, within CSW01_02220at 451.138 kb on - strand, within CSW01_02220at 451.167 kb on + strand, within CSW01_02220at 451.188 kb on - strand, within CSW01_02220at 451.206 kb on - strand, within CSW01_02220at 451.216 kb on - strand, within CSW01_02220at 451.236 kb on - strand, within CSW01_02220at 451.255 kb on + strand, within CSW01_02220at 451.260 kb on + strand, within CSW01_02220at 451.260 kb on + strand, within CSW01_02220at 451.260 kb on + strand, within CSW01_02220at 451.260 kb on + strand, within CSW01_02220at 451.260 kb on + strand, within CSW01_02220at 451.260 kb on + strand, within CSW01_02220at 451.260 kb on + strand, within CSW01_02220at 451.262 kb on + strand, within CSW01_02220at 451.262 kb on + strand, within CSW01_02220at 451.268 kb on - strand, within CSW01_02220at 451.268 kb on - strand, within CSW01_02220at 451.268 kb on - strand, within CSW01_02220at 451.268 kb on - strand, within CSW01_02220at 451.268 kb on - strand, within CSW01_02220at 451.488 kb on - strandat 451.496 kb on - strandat 451.496 kb on - strandat 451.562 kb on - strandat 451.578 kb on - strandat 451.578 kb on - strandat 451.583 kb on - strandat 451.618 kb on + strandat 451.621 kb on - strandat 451.698 kb on + strandat 451.759 kb on + strandat 451.767 kb on - strandat 451.798 kb on + strandat 451.806 kb on - strand, within CSW01_02225at 451.807 kb on - strand, within CSW01_02225at 451.807 kb on - strand, within CSW01_02225at 451.819 kb on + strand, within CSW01_02225at 451.837 kb on - strand, within CSW01_02225at 451.872 kb on + strand, within CSW01_02225at 451.899 kb on + strand, within CSW01_02225at 451.949 kb on - strand, within CSW01_02225at 451.966 kb on + strand, within CSW01_02225at 451.966 kb on + strand, within CSW01_02225at 452.006 kb on - strand, within CSW01_02225at 452.040 kb on + strand, within CSW01_02225at 452.048 kb on - strand, within CSW01_02225at 452.151 kb on - strand, within CSW01_02225at 452.153 kb on + strand, within CSW01_02225at 452.161 kb on - strand, within CSW01_02225at 452.200 kb on - strand, within CSW01_02225at 452.236 kb on - strand, within CSW01_02225at 452.249 kb on + strand, within CSW01_02225at 452.261 kb on + strand, within CSW01_02225at 452.286 kb on - strand, within CSW01_02225at 452.399 kb on + strand, within CSW01_02225at 452.408 kb on + strand, within CSW01_02225at 452.436 kb on - strand, within CSW01_02225at 452.547 kb on + strand, within CSW01_02225at 452.547 kb on + strand, within CSW01_02225at 452.580 kb on + strand, within CSW01_02225at 452.580 kb on + strand, within CSW01_02225at 452.580 kb on + strand, within CSW01_02225

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep2
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449,156 + -0.2
449,174 - +0.1
449,320 + -3.3
449,320 + +0.7
449,390 + -0.8
449,395 + -3.1
449,502 + CSW01_02215 0.23 -1.9
449,510 - CSW01_02215 0.24 +1.6
449,510 - CSW01_02215 0.24 -0.9
449,510 - CSW01_02215 0.24 -1.7
449,510 - CSW01_02215 0.24 -0.2
449,546 - CSW01_02215 0.28 -0.3
449,586 - CSW01_02215 0.33 +1.3
449,598 + CSW01_02215 0.34 -2.4
449,609 - CSW01_02215 0.36 +1.0
449,609 - CSW01_02215 0.36 +0.4
449,611 - CSW01_02215 0.36 -0.7
449,646 + CSW01_02215 0.40 -2.3
449,662 - CSW01_02215 0.42 +1.0
449,678 + CSW01_02215 0.44 -0.1
449,704 + CSW01_02215 0.47 +1.7
449,704 + CSW01_02215 0.47 +1.3
449,704 + CSW01_02215 0.47 -2.3
449,704 + CSW01_02215 0.47 -2.8
449,704 + CSW01_02215 0.47 -4.1
449,704 + CSW01_02215 0.47 -4.5
449,712 - CSW01_02215 0.48 +1.6
449,712 - CSW01_02215 0.48 -1.7
449,712 - CSW01_02215 0.48 +0.3
449,721 + CSW01_02215 0.49 +1.2
449,724 - CSW01_02215 0.50 -4.7
449,734 + CSW01_02215 0.51 +0.4
449,734 + CSW01_02215 0.51 -1.8
449,734 + CSW01_02215 0.51 -3.0
449,734 + CSW01_02215 0.51 -2.5
449,742 - CSW01_02215 0.52 -3.6
449,742 - CSW01_02215 0.52 +2.0
449,744 + CSW01_02215 0.52 -2.0
449,770 + CSW01_02215 0.55 -0.2
449,802 + CSW01_02215 0.59 -1.7
449,802 + CSW01_02215 0.59 +0.4
449,802 + CSW01_02215 0.59 -0.7
449,810 + CSW01_02215 0.60 +0.8
449,810 - CSW01_02215 0.60 -1.7
449,833 - CSW01_02215 0.63 -0.6
449,862 + CSW01_02215 0.66 +0.8
449,862 + CSW01_02215 0.66 +1.5
449,862 + CSW01_02215 0.66 +0.7
449,888 - CSW01_02215 0.69 +0.2
449,907 + CSW01_02215 0.72 -2.5
450,035 - CSW01_02215 0.87 +0.2
450,096 - -0.3
450,147 - -0.2
450,172 - +1.1
450,196 + -0.3
450,199 - +1.1
450,199 - +0.1
450,204 - +1.3
450,222 - +1.3
450,402 + CSW01_02220 0.18 +1.6
450,402 + CSW01_02220 0.18 -0.7
450,402 + CSW01_02220 0.18 -1.7
450,402 + CSW01_02220 0.18 -0.1
450,402 + CSW01_02220 0.18 -0.8
450,410 - CSW01_02220 0.19 -3.0
450,410 - CSW01_02220 0.19 -0.4
450,410 - CSW01_02220 0.19 -1.3
450,410 - CSW01_02220 0.19 +0.4
450,410 - CSW01_02220 0.19 -0.3
450,410 - CSW01_02220 0.19 +0.1
450,410 - CSW01_02220 0.19 -0.8
450,410 - CSW01_02220 0.19 -0.6
450,410 - CSW01_02220 0.19 -0.3
450,420 - CSW01_02220 0.19 -0.7
450,446 + CSW01_02220 0.21 -2.6
450,469 - CSW01_02220 0.23 +0.7
450,469 - CSW01_02220 0.23 +0.5
450,493 + CSW01_02220 0.24 -3.8
450,594 + CSW01_02220 0.31 -0.0
450,621 - CSW01_02220 0.33 -0.1
450,666 - CSW01_02220 0.36 +0.6
450,668 + CSW01_02220 0.37 -0.5
450,858 - CSW01_02220 0.50 +0.2
450,936 - CSW01_02220 0.55 +1.4
451,018 + CSW01_02220 0.61 -2.4
451,026 - CSW01_02220 0.61 +0.2
451,042 + CSW01_02220 0.62 +0.7
451,062 + CSW01_02220 0.64 -2.1
451,064 + CSW01_02220 0.64 -0.8
451,099 - CSW01_02220 0.66 -2.6
451,130 + CSW01_02220 0.68 -3.6
451,138 - CSW01_02220 0.69 +0.1
451,167 + CSW01_02220 0.71 -2.7
451,188 - CSW01_02220 0.72 -1.2
451,206 - CSW01_02220 0.74 +1.7
451,216 - CSW01_02220 0.74 -1.1
451,236 - CSW01_02220 0.76 -0.2
451,255 + CSW01_02220 0.77 -3.9
451,260 + CSW01_02220 0.77 -0.6
451,260 + CSW01_02220 0.77 -3.1
451,260 + CSW01_02220 0.77 -2.1
451,260 + CSW01_02220 0.77 +0.2
451,260 + CSW01_02220 0.77 -0.1
451,260 + CSW01_02220 0.77 +0.4
451,260 + CSW01_02220 0.77 +0.7
451,262 + CSW01_02220 0.78 -0.7
451,262 + CSW01_02220 0.78 -0.1
451,268 - CSW01_02220 0.78 +0.8
451,268 - CSW01_02220 0.78 -0.6
451,268 - CSW01_02220 0.78 +1.3
451,268 - CSW01_02220 0.78 +0.4
451,268 - CSW01_02220 0.78 +0.5
451,488 - +0.7
451,496 - -2.4
451,496 - +0.6
451,562 - -0.6
451,578 - -2.5
451,578 - -2.7
451,583 - +1.1
451,618 + +0.5
451,621 - -2.0
451,698 + -0.1
451,759 + +2.1
451,767 - -0.6
451,798 + +1.1
451,806 - CSW01_02225 0.10 +1.7
451,807 - CSW01_02225 0.10 -0.0
451,807 - CSW01_02225 0.10 +1.3
451,819 + CSW01_02225 0.11 -3.4
451,837 - CSW01_02225 0.13 +1.1
451,872 + CSW01_02225 0.16 +1.5
451,899 + CSW01_02225 0.18 +0.9
451,949 - CSW01_02225 0.22 +0.5
451,966 + CSW01_02225 0.23 -0.2
451,966 + CSW01_02225 0.23 -1.9
452,006 - CSW01_02225 0.27 -3.5
452,040 + CSW01_02225 0.29 +0.6
452,048 - CSW01_02225 0.30 -0.9
452,151 - CSW01_02225 0.38 +0.1
452,153 + CSW01_02225 0.39 -1.2
452,161 - CSW01_02225 0.39 +1.2
452,200 - CSW01_02225 0.42 -0.0
452,236 - CSW01_02225 0.45 -4.4
452,249 + CSW01_02225 0.46 -4.2
452,261 + CSW01_02225 0.47 -1.6
452,286 - CSW01_02225 0.49 -0.1
452,399 + CSW01_02225 0.59 +0.1
452,408 + CSW01_02225 0.59 -3.0
452,436 - CSW01_02225 0.62 -1.2
452,547 + CSW01_02225 0.71 +1.7
452,547 + CSW01_02225 0.71 +0.3
452,580 + CSW01_02225 0.73 +0.1
452,580 + CSW01_02225 0.73 +1.0
452,580 + CSW01_02225 0.73 +0.0

Or see this region's nucleotide sequence