Experiment: ICP3_phage_0.41_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_01850 and CSW01_01855 are separated by 42 nucleotides CSW01_01855 and CSW01_01860 are separated by 40 nucleotides CSW01_01860 and CSW01_01865 are separated by 2 nucleotides
CSW01_01850: CSW01_01850 - protease modulator HflC, at 371,711 to 372,691
_01850
CSW01_01855: CSW01_01855 - DUF2065 domain-containing protein, at 372,734 to 372,940
_01855
CSW01_01860: CSW01_01860 - SlyX protein, at 372,981 to 373,208
_01860
CSW01_01865: CSW01_01865 - hypothetical protein, at 373,211 to 374,194
_01865
Position (kb) 372
373
374 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 372.060 kb on + strand, within CSW01_01850 at 372.114 kb on + strand, within CSW01_01850 at 372.214 kb on + strand, within CSW01_01850 at 372.261 kb on - strand, within CSW01_01850 at 372.389 kb on + strand, within CSW01_01850 at 372.464 kb on - strand, within CSW01_01850 at 372.479 kb on - strand, within CSW01_01850 at 372.632 kb on + strand at 372.648 kb on - strand at 372.704 kb on - strand at 372.719 kb on - strand at 372.729 kb on - strand at 372.762 kb on + strand, within CSW01_01855 at 372.762 kb on + strand, within CSW01_01855 at 372.780 kb on + strand, within CSW01_01855 at 372.863 kb on - strand, within CSW01_01855 at 372.928 kb on - strand at 373.012 kb on + strand, within CSW01_01860 at 373.020 kb on - strand, within CSW01_01860 at 373.089 kb on - strand, within CSW01_01860 at 373.123 kb on - strand, within CSW01_01860 at 373.186 kb on - strand at 373.230 kb on + strand at 373.237 kb on - strand at 373.243 kb on + strand at 373.243 kb on + strand at 373.248 kb on + strand at 373.292 kb on + strand at 373.300 kb on - strand at 373.369 kb on - strand, within CSW01_01865 at 373.382 kb on + strand, within CSW01_01865 at 373.477 kb on + strand, within CSW01_01865 at 373.482 kb on + strand, within CSW01_01865 at 373.482 kb on + strand, within CSW01_01865 at 373.482 kb on + strand, within CSW01_01865 at 373.482 kb on + strand, within CSW01_01865 at 373.482 kb on + strand, within CSW01_01865 at 373.485 kb on - strand, within CSW01_01865 at 373.490 kb on - strand, within CSW01_01865 at 373.615 kb on - strand, within CSW01_01865 at 373.625 kb on - strand, within CSW01_01865 at 373.653 kb on + strand, within CSW01_01865 at 373.695 kb on + strand, within CSW01_01865 at 373.742 kb on + strand, within CSW01_01865 at 373.750 kb on - strand, within CSW01_01865 at 373.810 kb on + strand, within CSW01_01865 at 373.810 kb on + strand, within CSW01_01865 at 373.818 kb on - strand, within CSW01_01865 at 373.818 kb on - strand, within CSW01_01865 at 373.831 kb on - strand, within CSW01_01865 at 373.905 kb on - strand, within CSW01_01865 at 373.950 kb on + strand, within CSW01_01865 at 373.958 kb on - strand, within CSW01_01865 at 373.958 kb on - strand, within CSW01_01865 at 373.958 kb on - strand, within CSW01_01865 at 373.958 kb on - strand, within CSW01_01865 at 373.958 kb on - strand, within CSW01_01865 at 373.963 kb on - strand, within CSW01_01865 at 374.029 kb on + strand, within CSW01_01865 at 374.034 kb on + strand, within CSW01_01865 at 374.039 kb on + strand, within CSW01_01865 at 374.042 kb on - strand, within CSW01_01865 at 374.078 kb on + strand, within CSW01_01865 at 374.171 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep2 remove 372,060 + CSW01_01850 0.36 +1.5 372,114 + CSW01_01850 0.41 -0.5 372,214 + CSW01_01850 0.51 -3.1 372,261 - CSW01_01850 0.56 -0.5 372,389 + CSW01_01850 0.69 -1.9 372,464 - CSW01_01850 0.77 +1.0 372,479 - CSW01_01850 0.78 +0.5 372,632 + +0.7 372,648 - -0.2 372,704 - +1.1 372,719 - -0.3 372,729 - -0.8 372,762 + CSW01_01855 0.14 +0.2 372,762 + CSW01_01855 0.14 -3.6 372,780 + CSW01_01855 0.22 -0.6 372,863 - CSW01_01855 0.62 -3.6 372,928 - -1.8 373,012 + CSW01_01860 0.14 -2.3 373,020 - CSW01_01860 0.17 -3.2 373,089 - CSW01_01860 0.47 -0.0 373,123 - CSW01_01860 0.62 -3.2 373,186 - -0.6 373,230 + -3.6 373,237 - -1.3 373,243 + -3.5 373,243 + +1.2 373,248 + +1.0 373,292 + -1.9 373,300 - +2.9 373,369 - CSW01_01865 0.16 -1.7 373,382 + CSW01_01865 0.17 -1.0 373,477 + CSW01_01865 0.27 +0.6 373,482 + CSW01_01865 0.28 +1.6 373,482 + CSW01_01865 0.28 -0.6 373,482 + CSW01_01865 0.28 -0.6 373,482 + CSW01_01865 0.28 -2.3 373,482 + CSW01_01865 0.28 +0.1 373,485 - CSW01_01865 0.28 -0.9 373,490 - CSW01_01865 0.28 +0.7 373,615 - CSW01_01865 0.41 -3.2 373,625 - CSW01_01865 0.42 +0.2 373,653 + CSW01_01865 0.45 +0.9 373,695 + CSW01_01865 0.49 -3.3 373,742 + CSW01_01865 0.54 -1.2 373,750 - CSW01_01865 0.55 -2.0 373,810 + CSW01_01865 0.61 -0.2 373,810 + CSW01_01865 0.61 +0.1 373,818 - CSW01_01865 0.62 +0.1 373,818 - CSW01_01865 0.62 +0.9 373,831 - CSW01_01865 0.63 -0.2 373,905 - CSW01_01865 0.71 -1.1 373,950 + CSW01_01865 0.75 +0.9 373,958 - CSW01_01865 0.76 -4.9 373,958 - CSW01_01865 0.76 -1.1 373,958 - CSW01_01865 0.76 +1.4 373,958 - CSW01_01865 0.76 -2.6 373,958 - CSW01_01865 0.76 +0.3 373,963 - CSW01_01865 0.76 -4.2 374,029 + CSW01_01865 0.83 -0.1 374,034 + CSW01_01865 0.84 -1.2 374,039 + CSW01_01865 0.84 +1.3 374,042 - CSW01_01865 0.84 +0.4 374,078 + CSW01_01865 0.88 +0.8 374,171 - -2.8
Or see this region's nucleotide sequence