Experiment: ICP3_phage_0.41_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_01565 and CSW01_01570 are separated by 98 nucleotides CSW01_01570 and CSW01_01575 are separated by 81 nucleotides
CSW01_01565: CSW01_01565 - transcription termination factor Rho, at 317,036 to 318,295
_01565
CSW01_01570: CSW01_01570 - hypothetical protein, at 318,394 to 319,386
_01570
CSW01_01575: CSW01_01575 - 4-hydroxy-3-polyprenylbenzoate decarboxylase, at 319,468 to 321,309
_01575
Position (kb) 318
319
320 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 318.318 kb on + strand at 318.359 kb on + strand at 318.368 kb on + strand at 318.372 kb on - strand at 318.376 kb on - strand at 318.376 kb on - strand at 318.470 kb on + strand at 318.478 kb on - strand at 318.479 kb on + strand at 318.479 kb on + strand at 318.480 kb on + strand at 318.486 kb on + strand at 318.494 kb on - strand, within CSW01_01570 at 318.509 kb on - strand, within CSW01_01570 at 318.536 kb on - strand, within CSW01_01570 at 318.549 kb on + strand, within CSW01_01570 at 318.582 kb on + strand, within CSW01_01570 at 318.615 kb on - strand, within CSW01_01570 at 318.640 kb on - strand, within CSW01_01570 at 318.661 kb on - strand, within CSW01_01570 at 318.675 kb on + strand, within CSW01_01570 at 318.683 kb on - strand, within CSW01_01570 at 318.683 kb on - strand, within CSW01_01570 at 318.734 kb on + strand, within CSW01_01570 at 318.794 kb on - strand, within CSW01_01570 at 318.852 kb on + strand, within CSW01_01570 at 318.922 kb on + strand, within CSW01_01570 at 318.922 kb on + strand, within CSW01_01570 at 318.922 kb on + strand, within CSW01_01570 at 318.930 kb on - strand, within CSW01_01570 at 318.954 kb on - strand, within CSW01_01570 at 318.969 kb on + strand, within CSW01_01570 at 318.977 kb on - strand, within CSW01_01570 at 318.999 kb on + strand, within CSW01_01570 at 319.036 kb on + strand, within CSW01_01570 at 319.044 kb on - strand, within CSW01_01570 at 319.045 kb on - strand, within CSW01_01570 at 319.130 kb on + strand, within CSW01_01570 at 319.172 kb on + strand, within CSW01_01570 at 319.180 kb on - strand, within CSW01_01570 at 319.258 kb on - strand, within CSW01_01570 at 319.278 kb on + strand, within CSW01_01570 at 319.332 kb on - strand at 319.396 kb on - strand at 319.412 kb on + strand at 319.420 kb on - strand at 319.432 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep2 remove 318,318 + -4.5 318,359 + -0.9 318,368 + +1.3 318,372 - -2.4 318,376 - -3.0 318,376 - -0.6 318,470 + -0.8 318,478 - -2.3 318,479 + +1.0 318,479 + +0.4 318,480 + -0.4 318,486 + +2.1 318,494 - CSW01_01570 0.10 -2.5 318,509 - CSW01_01570 0.12 -3.8 318,536 - CSW01_01570 0.14 +1.4 318,549 + CSW01_01570 0.16 -2.2 318,582 + CSW01_01570 0.19 +1.2 318,615 - CSW01_01570 0.22 +0.7 318,640 - CSW01_01570 0.25 +0.6 318,661 - CSW01_01570 0.27 +0.8 318,675 + CSW01_01570 0.28 -0.6 318,683 - CSW01_01570 0.29 -1.4 318,683 - CSW01_01570 0.29 -3.8 318,734 + CSW01_01570 0.34 +1.0 318,794 - CSW01_01570 0.40 +1.7 318,852 + CSW01_01570 0.46 -2.2 318,922 + CSW01_01570 0.53 -2.1 318,922 + CSW01_01570 0.53 -2.2 318,922 + CSW01_01570 0.53 +1.9 318,930 - CSW01_01570 0.54 -0.0 318,954 - CSW01_01570 0.56 -0.9 318,969 + CSW01_01570 0.58 +1.5 318,977 - CSW01_01570 0.59 -3.5 318,999 + CSW01_01570 0.61 -2.6 319,036 + CSW01_01570 0.65 -0.8 319,044 - CSW01_01570 0.65 -2.9 319,045 - CSW01_01570 0.66 -3.3 319,130 + CSW01_01570 0.74 +0.8 319,172 + CSW01_01570 0.78 -1.4 319,180 - CSW01_01570 0.79 +0.2 319,258 - CSW01_01570 0.87 -0.8 319,278 + CSW01_01570 0.89 -1.5 319,332 - -0.3 319,396 - -3.1 319,412 + -0.4 319,420 - +0.5 319,432 - +0.4
Or see this region's nucleotide sequence