Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01045

Experiment: ICP3_phage_0.41_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01040 and CSW01_01045 are separated by 160 nucleotidesCSW01_01045 and CSW01_01050 overlap by 8 nucleotidesCSW01_01050 and CSW01_01055 are separated by 155 nucleotidesCSW01_01055 and CSW01_01060 are separated by 35 nucleotides CSW01_01040: CSW01_01040 - protein RarD, at 200,762 to 201,670 _01040 CSW01_01045: CSW01_01045 - DNA helicase RecQ, at 201,831 to 203,666 _01045 CSW01_01050: CSW01_01050 - DUF3630 domain-containing protein, at 203,659 to 203,958 _01050 CSW01_01055: CSW01_01055 - hypothetical protein, at 204,114 to 204,491 _01055 CSW01_01060: CSW01_01060 - ABC transporter ATP-binding protein, at 204,527 to 206,362 _01060 Position (kb) 201 202 203 204Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2 3at 200.836 kb on + strandat 200.879 kb on + strand, within CSW01_01040at 200.879 kb on + strand, within CSW01_01040at 200.887 kb on - strand, within CSW01_01040at 200.900 kb on + strand, within CSW01_01040at 200.908 kb on - strand, within CSW01_01040at 200.978 kb on - strand, within CSW01_01040at 200.980 kb on + strand, within CSW01_01040at 201.001 kb on - strand, within CSW01_01040at 201.011 kb on - strand, within CSW01_01040at 201.036 kb on - strand, within CSW01_01040at 201.036 kb on - strand, within CSW01_01040at 201.036 kb on - strand, within CSW01_01040at 201.036 kb on - strand, within CSW01_01040at 201.043 kb on + strand, within CSW01_01040at 201.043 kb on - strand, within CSW01_01040at 201.051 kb on - strand, within CSW01_01040at 201.069 kb on + strand, within CSW01_01040at 201.127 kb on - strand, within CSW01_01040at 201.127 kb on - strand, within CSW01_01040at 201.172 kb on + strand, within CSW01_01040at 201.203 kb on + strand, within CSW01_01040at 201.203 kb on + strand, within CSW01_01040at 201.203 kb on + strand, within CSW01_01040at 201.211 kb on - strand, within CSW01_01040at 201.218 kb on + strand, within CSW01_01040at 201.221 kb on - strand, within CSW01_01040at 201.223 kb on - strand, within CSW01_01040at 201.258 kb on - strand, within CSW01_01040at 201.318 kb on + strand, within CSW01_01040at 201.326 kb on - strand, within CSW01_01040at 201.331 kb on + strand, within CSW01_01040at 201.365 kb on + strand, within CSW01_01040at 201.375 kb on - strand, within CSW01_01040at 201.375 kb on - strand, within CSW01_01040at 201.409 kb on - strand, within CSW01_01040at 201.423 kb on + strand, within CSW01_01040at 201.451 kb on + strand, within CSW01_01040at 201.457 kb on + strand, within CSW01_01040at 201.457 kb on + strand, within CSW01_01040at 201.460 kb on - strand, within CSW01_01040at 201.589 kb on + strandat 201.606 kb on + strandat 201.620 kb on - strandat 201.671 kb on + strandat 201.685 kb on - strandat 201.686 kb on - strandat 201.723 kb on + strandat 201.736 kb on - strandat 201.738 kb on - strandat 201.738 kb on - strandat 201.746 kb on - strandat 201.762 kb on - strandat 201.762 kb on - strandat 201.774 kb on - strandat 201.782 kb on + strandat 201.787 kb on - strandat 201.808 kb on - strandat 201.831 kb on - strandat 201.831 kb on - strandat 201.833 kb on - strandat 201.854 kb on + strandat 201.864 kb on - strandat 201.866 kb on + strandat 201.874 kb on - strandat 201.897 kb on + strandat 201.905 kb on - strandat 201.907 kb on - strandat 201.933 kb on + strandat 201.946 kb on - strandat 201.947 kb on + strandat 202.006 kb on + strandat 202.015 kb on + strand, within CSW01_01045at 202.015 kb on + strand, within CSW01_01045at 202.015 kb on + strand, within CSW01_01045at 202.023 kb on - strand, within CSW01_01045at 202.023 kb on - strand, within CSW01_01045at 202.023 kb on - strand, within CSW01_01045at 202.044 kb on - strand, within CSW01_01045at 202.091 kb on + strand, within CSW01_01045at 202.091 kb on + strand, within CSW01_01045at 202.099 kb on - strand, within CSW01_01045at 202.099 kb on - strand, within CSW01_01045at 202.099 kb on - strand, within CSW01_01045at 202.133 kb on - strand, within CSW01_01045at 202.141 kb on + strand, within CSW01_01045at 202.184 kb on + strand, within CSW01_01045at 202.184 kb on + strand, within CSW01_01045at 202.191 kb on - strand, within CSW01_01045at 202.192 kb on - strand, within CSW01_01045at 202.193 kb on + strand, within CSW01_01045at 202.193 kb on + strand, within CSW01_01045at 202.193 kb on + strand, within CSW01_01045at 202.201 kb on - strand, within CSW01_01045at 202.201 kb on - strand, within CSW01_01045at 202.246 kb on + strand, within CSW01_01045at 202.246 kb on + strand, within CSW01_01045at 202.247 kb on - strand, within CSW01_01045at 202.249 kb on - strand, within CSW01_01045at 202.249 kb on - strand, within CSW01_01045at 202.296 kb on - strand, within CSW01_01045at 202.330 kb on + strand, within CSW01_01045at 202.347 kb on - strand, within CSW01_01045at 202.347 kb on - strand, within CSW01_01045at 202.347 kb on - strand, within CSW01_01045at 202.413 kb on + strand, within CSW01_01045at 202.419 kb on - strand, within CSW01_01045at 202.430 kb on + strand, within CSW01_01045at 202.459 kb on + strand, within CSW01_01045at 202.467 kb on - strand, within CSW01_01045at 202.467 kb on - strand, within CSW01_01045at 202.597 kb on + strand, within CSW01_01045at 202.597 kb on + strand, within CSW01_01045at 202.605 kb on - strand, within CSW01_01045at 202.612 kb on - strand, within CSW01_01045at 202.644 kb on + strand, within CSW01_01045at 202.663 kb on + strand, within CSW01_01045at 202.686 kb on - strand, within CSW01_01045at 202.752 kb on - strand, within CSW01_01045at 202.786 kb on + strand, within CSW01_01045at 202.821 kb on + strand, within CSW01_01045at 202.829 kb on - strand, within CSW01_01045at 202.831 kb on - strand, within CSW01_01045at 202.854 kb on - strand, within CSW01_01045at 202.856 kb on + strand, within CSW01_01045at 202.864 kb on - strand, within CSW01_01045at 202.885 kb on + strand, within CSW01_01045at 202.904 kb on + strand, within CSW01_01045at 202.912 kb on - strand, within CSW01_01045at 202.912 kb on - strand, within CSW01_01045at 203.024 kb on + strand, within CSW01_01045at 203.057 kb on + strand, within CSW01_01045at 203.082 kb on - strand, within CSW01_01045at 203.102 kb on - strand, within CSW01_01045at 203.145 kb on + strand, within CSW01_01045at 203.159 kb on - strand, within CSW01_01045at 203.161 kb on - strand, within CSW01_01045at 203.209 kb on + strand, within CSW01_01045at 203.285 kb on - strand, within CSW01_01045at 203.285 kb on - strand, within CSW01_01045at 203.308 kb on - strand, within CSW01_01045at 203.345 kb on - strand, within CSW01_01045at 203.379 kb on + strand, within CSW01_01045at 203.459 kb on + strand, within CSW01_01045at 203.476 kb on - strand, within CSW01_01045at 203.493 kb on + strandat 203.534 kb on - strandat 203.558 kb on - strandat 203.582 kb on + strandat 203.587 kb on + strandat 203.587 kb on + strandat 203.587 kb on + strandat 203.587 kb on + strandat 203.587 kb on + strandat 203.587 kb on + strandat 203.587 kb on + strandat 203.587 kb on + strandat 203.590 kb on - strandat 203.595 kb on - strandat 203.595 kb on - strandat 203.595 kb on - strandat 203.595 kb on - strandat 203.595 kb on - strandat 203.667 kb on + strandat 203.758 kb on + strand, within CSW01_01050at 203.804 kb on + strand, within CSW01_01050at 203.809 kb on + strand, within CSW01_01050at 203.809 kb on + strand, within CSW01_01050at 203.809 kb on + strand, within CSW01_01050at 203.817 kb on - strand, within CSW01_01050at 203.817 kb on - strand, within CSW01_01050at 203.817 kb on - strand, within CSW01_01050at 203.817 kb on - strand, within CSW01_01050at 203.817 kb on - strand, within CSW01_01050at 203.817 kb on - strand, within CSW01_01050at 203.819 kb on - strand, within CSW01_01050at 203.819 kb on - strand, within CSW01_01050at 203.894 kb on + strand, within CSW01_01050at 203.900 kb on + strand, within CSW01_01050at 203.900 kb on + strand, within CSW01_01050at 203.905 kb on + strand, within CSW01_01050at 203.905 kb on + strand, within CSW01_01050at 203.905 kb on + strand, within CSW01_01050at 203.905 kb on + strand, within CSW01_01050at 203.905 kb on + strand, within CSW01_01050at 203.913 kb on - strand, within CSW01_01050at 203.913 kb on - strand, within CSW01_01050at 203.952 kb on + strandat 203.973 kb on + strandat 203.976 kb on - strandat 203.976 kb on - strandat 204.001 kb on - strandat 204.033 kb on + strandat 204.041 kb on + strandat 204.041 kb on - strandat 204.041 kb on - strandat 204.081 kb on + strandat 204.087 kb on - strandat 204.104 kb on + strandat 204.132 kb on + strandat 204.216 kb on + strand, within CSW01_01055at 204.228 kb on + strand, within CSW01_01055at 204.233 kb on + strand, within CSW01_01055at 204.279 kb on + strand, within CSW01_01055at 204.279 kb on + strand, within CSW01_01055at 204.279 kb on + strand, within CSW01_01055at 204.279 kb on + strand, within CSW01_01055at 204.298 kb on - strand, within CSW01_01055at 204.316 kb on + strand, within CSW01_01055at 204.316 kb on + strand, within CSW01_01055at 204.316 kb on + strand, within CSW01_01055at 204.316 kb on + strand, within CSW01_01055at 204.316 kb on + strand, within CSW01_01055at 204.316 kb on + strand, within CSW01_01055at 204.316 kb on + strand, within CSW01_01055at 204.316 kb on + strand, within CSW01_01055at 204.316 kb on + strand, within CSW01_01055at 204.316 kb on + strand, within CSW01_01055at 204.316 kb on + strand, within CSW01_01055at 204.316 kb on + strand, within CSW01_01055at 204.324 kb on - strand, within CSW01_01055at 204.324 kb on - strand, within CSW01_01055at 204.324 kb on - strand, within CSW01_01055at 204.324 kb on - strand, within CSW01_01055at 204.324 kb on - strand, within CSW01_01055at 204.324 kb on - strand, within CSW01_01055at 204.324 kb on - strand, within CSW01_01055at 204.324 kb on - strand, within CSW01_01055at 204.324 kb on - strand, within CSW01_01055at 204.324 kb on - strand, within CSW01_01055at 204.324 kb on - strand, within CSW01_01055at 204.326 kb on + strand, within CSW01_01055at 204.326 kb on + strand, within CSW01_01055at 204.326 kb on + strand, within CSW01_01055at 204.326 kb on + strand, within CSW01_01055at 204.334 kb on - strand, within CSW01_01055at 204.360 kb on + strand, within CSW01_01055at 204.360 kb on + strand, within CSW01_01055at 204.368 kb on - strand, within CSW01_01055at 204.368 kb on - strand, within CSW01_01055at 204.381 kb on + strand, within CSW01_01055at 204.447 kb on - strand, within CSW01_01055at 204.463 kb on - strandat 204.472 kb on + strandat 204.507 kb on + strandat 204.515 kb on - strandat 204.515 kb on - strandat 204.515 kb on - strandat 204.515 kb on - strandat 204.515 kb on - strandat 204.559 kb on - strandat 204.561 kb on + strandat 204.569 kb on - strandat 204.599 kb on + strandat 204.599 kb on + strandat 204.599 kb on + strandat 204.599 kb on + strandat 204.599 kb on + strandat 204.607 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep2
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200,836 + +1.6
200,879 + CSW01_01040 0.13 +1.3
200,879 + CSW01_01040 0.13 +0.6
200,887 - CSW01_01040 0.14 -1.3
200,900 + CSW01_01040 0.15 +0.8
200,908 - CSW01_01040 0.16 +0.5
200,978 - CSW01_01040 0.24 +0.1
200,980 + CSW01_01040 0.24 +0.7
201,001 - CSW01_01040 0.26 -3.6
201,011 - CSW01_01040 0.27 +1.7
201,036 - CSW01_01040 0.30 -0.9
201,036 - CSW01_01040 0.30 -2.1
201,036 - CSW01_01040 0.30 +0.8
201,036 - CSW01_01040 0.30 -0.4
201,043 + CSW01_01040 0.31 +0.8
201,043 - CSW01_01040 0.31 -0.3
201,051 - CSW01_01040 0.32 -1.7
201,069 + CSW01_01040 0.34 -0.4
201,127 - CSW01_01040 0.40 +1.2
201,127 - CSW01_01040 0.40 +0.3
201,172 + CSW01_01040 0.45 +0.8
201,203 + CSW01_01040 0.49 +1.2
201,203 + CSW01_01040 0.49 +2.2
201,203 + CSW01_01040 0.49 +0.5
201,211 - CSW01_01040 0.49 -3.5
201,218 + CSW01_01040 0.50 -2.9
201,221 - CSW01_01040 0.50 -2.3
201,223 - CSW01_01040 0.51 +0.1
201,258 - CSW01_01040 0.55 -2.4
201,318 + CSW01_01040 0.61 +0.0
201,326 - CSW01_01040 0.62 -1.6
201,331 + CSW01_01040 0.63 +0.1
201,365 + CSW01_01040 0.66 -0.9
201,375 - CSW01_01040 0.67 -2.1
201,375 - CSW01_01040 0.67 -2.7
201,409 - CSW01_01040 0.71 +0.8
201,423 + CSW01_01040 0.73 +0.2
201,451 + CSW01_01040 0.76 -0.4
201,457 + CSW01_01040 0.76 -1.2
201,457 + CSW01_01040 0.76 +1.1
201,460 - CSW01_01040 0.77 +2.1
201,589 + -1.8
201,606 + -3.7
201,620 - +0.5
201,671 + -3.2
201,685 - +0.1
201,686 - -1.1
201,723 + +1.7
201,736 - -3.6
201,738 - +2.1
201,738 - -3.0
201,746 - -3.0
201,762 - +0.5
201,762 - -3.2
201,774 - -2.1
201,782 + -3.5
201,787 - -0.0
201,808 - +0.2
201,831 - -0.6
201,831 - -0.4
201,833 - +2.0
201,854 + -1.3
201,864 - +0.5
201,866 + -0.8
201,874 - -0.2
201,897 + -3.6
201,905 - -4.3
201,907 - -3.6
201,933 + +0.5
201,946 - -0.3
201,947 + +0.3
202,006 + +0.5
202,015 + CSW01_01045 0.10 -0.2
202,015 + CSW01_01045 0.10 +1.1
202,015 + CSW01_01045 0.10 -3.0
202,023 - CSW01_01045 0.10 -3.6
202,023 - CSW01_01045 0.10 -3.6
202,023 - CSW01_01045 0.10 +0.9
202,044 - CSW01_01045 0.12 -1.5
202,091 + CSW01_01045 0.14 -2.0
202,091 + CSW01_01045 0.14 -0.3
202,099 - CSW01_01045 0.15 -1.0
202,099 - CSW01_01045 0.15 -0.9
202,099 - CSW01_01045 0.15 -4.6
202,133 - CSW01_01045 0.16 +0.9
202,141 + CSW01_01045 0.17 -4.4
202,184 + CSW01_01045 0.19 -0.7
202,184 + CSW01_01045 0.19 +0.6
202,191 - CSW01_01045 0.20 -1.5
202,192 - CSW01_01045 0.20 -0.1
202,193 + CSW01_01045 0.20 +2.4
202,193 + CSW01_01045 0.20 -2.0
202,193 + CSW01_01045 0.20 -4.5
202,201 - CSW01_01045 0.20 +0.4
202,201 - CSW01_01045 0.20 +1.7
202,246 + CSW01_01045 0.23 -2.0
202,246 + CSW01_01045 0.23 +0.1
202,247 - CSW01_01045 0.23 +0.9
202,249 - CSW01_01045 0.23 -1.1
202,249 - CSW01_01045 0.23 -3.2
202,296 - CSW01_01045 0.25 -0.4
202,330 + CSW01_01045 0.27 +1.6
202,347 - CSW01_01045 0.28 +0.5
202,347 - CSW01_01045 0.28 -0.4
202,347 - CSW01_01045 0.28 -3.4
202,413 + CSW01_01045 0.32 -4.6
202,419 - CSW01_01045 0.32 +1.9
202,430 + CSW01_01045 0.33 -0.9
202,459 + CSW01_01045 0.34 -0.2
202,467 - CSW01_01045 0.35 +0.2
202,467 - CSW01_01045 0.35 -5.9
202,597 + CSW01_01045 0.42 -2.9
202,597 + CSW01_01045 0.42 -0.9
202,605 - CSW01_01045 0.42 +2.3
202,612 - CSW01_01045 0.43 -3.1
202,644 + CSW01_01045 0.44 +2.4
202,663 + CSW01_01045 0.45 +0.1
202,686 - CSW01_01045 0.47 -0.1
202,752 - CSW01_01045 0.50 -0.1
202,786 + CSW01_01045 0.52 -4.4
202,821 + CSW01_01045 0.54 -4.0
202,829 - CSW01_01045 0.54 -0.1
202,831 - CSW01_01045 0.54 -0.2
202,854 - CSW01_01045 0.56 +1.4
202,856 + CSW01_01045 0.56 -0.1
202,864 - CSW01_01045 0.56 -2.9
202,885 + CSW01_01045 0.57 +0.9
202,904 + CSW01_01045 0.58 -0.7
202,912 - CSW01_01045 0.59 -0.2
202,912 - CSW01_01045 0.59 -0.1
203,024 + CSW01_01045 0.65 -1.4
203,057 + CSW01_01045 0.67 +0.8
203,082 - CSW01_01045 0.68 +1.2
203,102 - CSW01_01045 0.69 -1.3
203,145 + CSW01_01045 0.72 -0.0
203,159 - CSW01_01045 0.72 -0.5
203,161 - CSW01_01045 0.72 +0.5
203,209 + CSW01_01045 0.75 -1.1
203,285 - CSW01_01045 0.79 -0.1
203,285 - CSW01_01045 0.79 -3.3
203,308 - CSW01_01045 0.80 +0.7
203,345 - CSW01_01045 0.82 -2.9
203,379 + CSW01_01045 0.84 +1.3
203,459 + CSW01_01045 0.89 +0.1
203,476 - CSW01_01045 0.90 -0.5
203,493 + -0.2
203,534 - +0.4
203,558 - -2.3
203,582 + -1.0
203,587 + -2.3
203,587 + -1.6
203,587 + +0.5
203,587 + +0.8
203,587 + -0.3
203,587 + -3.6
203,587 + -2.4
203,587 + -0.1
203,590 - -0.9
203,595 - +0.5
203,595 - -2.3
203,595 - +1.4
203,595 - +1.4
203,595 - -0.3
203,667 + +0.0
203,758 + CSW01_01050 0.33 +1.3
203,804 + CSW01_01050 0.48 -0.2
203,809 + CSW01_01050 0.50 +0.2
203,809 + CSW01_01050 0.50 -0.8
203,809 + CSW01_01050 0.50 +0.9
203,817 - CSW01_01050 0.53 +1.1
203,817 - CSW01_01050 0.53 -4.0
203,817 - CSW01_01050 0.53 -0.0
203,817 - CSW01_01050 0.53 -3.6
203,817 - CSW01_01050 0.53 -0.3
203,817 - CSW01_01050 0.53 -4.2
203,819 - CSW01_01050 0.53 +0.7
203,819 - CSW01_01050 0.53 +0.5
203,894 + CSW01_01050 0.78 -3.7
203,900 + CSW01_01050 0.80 +1.4
203,900 + CSW01_01050 0.80 +2.1
203,905 + CSW01_01050 0.82 -1.5
203,905 + CSW01_01050 0.82 +0.4
203,905 + CSW01_01050 0.82 +1.4
203,905 + CSW01_01050 0.82 +0.3
203,905 + CSW01_01050 0.82 -0.9
203,913 - CSW01_01050 0.85 +2.1
203,913 - CSW01_01050 0.85 -3.5
203,952 + -0.7
203,973 + +2.5
203,976 - +1.1
203,976 - +0.9
204,001 - -1.1
204,033 + -0.2
204,041 + +0.2
204,041 - +1.5
204,041 - -0.5
204,081 + -1.7
204,087 - -3.6
204,104 + +0.1
204,132 + +1.1
204,216 + CSW01_01055 0.27 +1.8
204,228 + CSW01_01055 0.30 +0.3
204,233 + CSW01_01055 0.31 +0.4
204,279 + CSW01_01055 0.44 +1.0
204,279 + CSW01_01055 0.44 -1.8
204,279 + CSW01_01055 0.44 +2.4
204,279 + CSW01_01055 0.44 -2.8
204,298 - CSW01_01055 0.49 -4.1
204,316 + CSW01_01055 0.53 -0.1
204,316 + CSW01_01055 0.53 -0.9
204,316 + CSW01_01055 0.53 -1.2
204,316 + CSW01_01055 0.53 +1.2
204,316 + CSW01_01055 0.53 -2.6
204,316 + CSW01_01055 0.53 -1.6
204,316 + CSW01_01055 0.53 +1.2
204,316 + CSW01_01055 0.53 -1.1
204,316 + CSW01_01055 0.53 +0.1
204,316 + CSW01_01055 0.53 +2.1
204,316 + CSW01_01055 0.53 +0.5
204,316 + CSW01_01055 0.53 -4.3
204,324 - CSW01_01055 0.56 -0.1
204,324 - CSW01_01055 0.56 -1.2
204,324 - CSW01_01055 0.56 -4.5
204,324 - CSW01_01055 0.56 -0.3
204,324 - CSW01_01055 0.56 -1.9
204,324 - CSW01_01055 0.56 +0.3
204,324 - CSW01_01055 0.56 -1.7
204,324 - CSW01_01055 0.56 +2.1
204,324 - CSW01_01055 0.56 +0.1
204,324 - CSW01_01055 0.56 +3.2
204,324 - CSW01_01055 0.56 +0.3
204,326 + CSW01_01055 0.56 +0.2
204,326 + CSW01_01055 0.56 +0.5
204,326 + CSW01_01055 0.56 +1.1
204,326 + CSW01_01055 0.56 +0.8
204,334 - CSW01_01055 0.58 -0.9
204,360 + CSW01_01055 0.65 +1.0
204,360 + CSW01_01055 0.65 -0.9
204,368 - CSW01_01055 0.67 +0.9
204,368 - CSW01_01055 0.67 -2.7
204,381 + CSW01_01055 0.71 +1.3
204,447 - CSW01_01055 0.88 -0.9
204,463 - -1.8
204,472 + +0.9
204,507 + -0.3
204,515 - -0.3
204,515 - +0.9
204,515 - +2.9
204,515 - -3.1
204,515 - -3.8
204,559 - -2.3
204,561 + -5.1
204,569 - +0.9
204,599 + +1.5
204,599 + -0.5
204,599 + -1.0
204,599 + +0.2
204,599 + +0.5
204,607 - +1.0

Or see this region's nucleotide sequence