Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_00915

Experiment: ICP3_phage_0.41_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_00910 and CSW01_00915 are separated by 91 nucleotidesCSW01_00915 and CSW01_00920 are separated by 154 nucleotides CSW01_00910: CSW01_00910 - ABC transporter ATP-binding protein, at 168,533 to 170,248 _00910 CSW01_00915: CSW01_00915 - nickel/dipeptide/oligopeptide ABC transporter substrate-binding protein, at 170,340 to 171,896 _00915 CSW01_00920: CSW01_00920 - ABC transporter permease, at 172,051 to 173,028 _00920 Position (kb) 170 171 172Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 169.373 kb on - strand, within CSW01_00910at 169.395 kb on + strand, within CSW01_00910at 169.395 kb on + strand, within CSW01_00910at 169.395 kb on + strand, within CSW01_00910at 169.405 kb on + strand, within CSW01_00910at 169.405 kb on + strand, within CSW01_00910at 169.407 kb on + strand, within CSW01_00910at 169.413 kb on - strand, within CSW01_00910at 169.415 kb on - strand, within CSW01_00910at 169.415 kb on - strand, within CSW01_00910at 169.554 kb on + strand, within CSW01_00910at 169.554 kb on + strand, within CSW01_00910at 169.554 kb on + strand, within CSW01_00910at 169.554 kb on + strand, within CSW01_00910at 169.554 kb on + strand, within CSW01_00910at 169.554 kb on + strand, within CSW01_00910at 169.554 kb on + strand, within CSW01_00910at 169.554 kb on + strand, within CSW01_00910at 169.562 kb on - strand, within CSW01_00910at 169.562 kb on - strand, within CSW01_00910at 169.562 kb on - strand, within CSW01_00910at 169.562 kb on - strand, within CSW01_00910at 169.562 kb on - strand, within CSW01_00910at 169.562 kb on - strand, within CSW01_00910at 169.562 kb on - strand, within CSW01_00910at 169.562 kb on - strand, within CSW01_00910at 169.562 kb on - strand, within CSW01_00910at 169.562 kb on - strand, within CSW01_00910at 169.562 kb on - strand, within CSW01_00910at 169.562 kb on - strand, within CSW01_00910at 169.562 kb on - strand, within CSW01_00910at 169.562 kb on - strand, within CSW01_00910at 169.562 kb on - strand, within CSW01_00910at 169.562 kb on - strand, within CSW01_00910at 169.562 kb on - strand, within CSW01_00910at 169.562 kb on - strand, within CSW01_00910at 169.562 kb on - strand, within CSW01_00910at 169.562 kb on - strand, within CSW01_00910at 169.572 kb on - strand, within CSW01_00910at 169.598 kb on + strand, within CSW01_00910at 169.614 kb on + strand, within CSW01_00910at 169.624 kb on + strand, within CSW01_00910at 169.624 kb on + strand, within CSW01_00910at 169.624 kb on + strand, within CSW01_00910at 169.652 kb on - strand, within CSW01_00910at 169.657 kb on + strand, within CSW01_00910at 169.659 kb on + strand, within CSW01_00910at 169.744 kb on - strand, within CSW01_00910at 169.857 kb on + strand, within CSW01_00910at 169.909 kb on + strand, within CSW01_00910at 169.982 kb on + strand, within CSW01_00910at 169.992 kb on + strand, within CSW01_00910at 169.995 kb on - strand, within CSW01_00910at 170.104 kb on + strandat 170.112 kb on - strandat 170.127 kb on + strandat 170.163 kb on - strandat 170.182 kb on - strandat 170.227 kb on - strandat 170.263 kb on - strandat 170.265 kb on + strandat 170.444 kb on - strandat 170.455 kb on + strandat 170.465 kb on + strandat 170.560 kb on - strand, within CSW01_00915at 170.714 kb on - strand, within CSW01_00915at 170.714 kb on - strand, within CSW01_00915at 170.761 kb on + strand, within CSW01_00915at 170.816 kb on + strand, within CSW01_00915at 170.816 kb on + strand, within CSW01_00915at 170.816 kb on + strand, within CSW01_00915at 170.824 kb on - strand, within CSW01_00915at 170.824 kb on - strand, within CSW01_00915at 170.828 kb on - strand, within CSW01_00915at 170.875 kb on - strand, within CSW01_00915at 171.012 kb on - strand, within CSW01_00915at 171.020 kb on + strand, within CSW01_00915at 171.038 kb on - strand, within CSW01_00915at 171.053 kb on + strand, within CSW01_00915at 171.056 kb on + strand, within CSW01_00915at 171.056 kb on + strand, within CSW01_00915at 171.124 kb on + strand, within CSW01_00915at 171.132 kb on - strand, within CSW01_00915at 171.132 kb on - strand, within CSW01_00915at 171.132 kb on - strand, within CSW01_00915at 171.148 kb on + strand, within CSW01_00915at 171.149 kb on - strand, within CSW01_00915at 171.182 kb on + strand, within CSW01_00915at 171.217 kb on + strand, within CSW01_00915at 171.269 kb on - strand, within CSW01_00915at 171.283 kb on + strand, within CSW01_00915at 171.293 kb on + strand, within CSW01_00915at 171.337 kb on - strand, within CSW01_00915at 171.340 kb on + strand, within CSW01_00915at 171.340 kb on + strand, within CSW01_00915at 171.399 kb on + strand, within CSW01_00915at 171.401 kb on - strand, within CSW01_00915at 171.402 kb on - strand, within CSW01_00915at 171.402 kb on - strand, within CSW01_00915at 171.407 kb on - strand, within CSW01_00915at 171.412 kb on - strand, within CSW01_00915at 171.438 kb on + strand, within CSW01_00915at 171.505 kb on - strand, within CSW01_00915at 171.521 kb on + strand, within CSW01_00915at 171.521 kb on + strand, within CSW01_00915at 171.529 kb on - strand, within CSW01_00915at 171.529 kb on - strand, within CSW01_00915at 171.550 kb on - strand, within CSW01_00915at 171.616 kb on - strand, within CSW01_00915at 171.637 kb on - strand, within CSW01_00915at 171.638 kb on + strand, within CSW01_00915at 171.638 kb on + strand, within CSW01_00915at 171.638 kb on + strand, within CSW01_00915at 171.646 kb on - strand, within CSW01_00915at 171.646 kb on - strand, within CSW01_00915at 171.653 kb on - strand, within CSW01_00915at 171.700 kb on - strand, within CSW01_00915at 171.736 kb on - strand, within CSW01_00915at 171.736 kb on - strand, within CSW01_00915at 171.758 kb on - strandat 171.843 kb on + strandat 171.852 kb on + strandat 171.852 kb on + strandat 171.891 kb on + strandat 171.905 kb on - strandat 171.905 kb on - strandat 171.911 kb on + strandat 171.914 kb on - strandat 171.925 kb on + strandat 171.925 kb on + strandat 171.941 kb on - strandat 172.065 kb on + strandat 172.109 kb on + strandat 172.173 kb on - strand, within CSW01_00920at 172.198 kb on - strand, within CSW01_00920at 172.208 kb on + strand, within CSW01_00920at 172.216 kb on - strand, within CSW01_00920at 172.264 kb on + strand, within CSW01_00920at 172.272 kb on - strand, within CSW01_00920at 172.348 kb on - strand, within CSW01_00920at 172.358 kb on + strand, within CSW01_00920at 172.366 kb on - strand, within CSW01_00920at 172.371 kb on - strand, within CSW01_00920at 172.381 kb on - strand, within CSW01_00920at 172.392 kb on + strand, within CSW01_00920at 172.500 kb on + strand, within CSW01_00920at 172.510 kb on - strand, within CSW01_00920at 172.525 kb on + strand, within CSW01_00920at 172.536 kb on + strand, within CSW01_00920at 172.538 kb on + strand, within CSW01_00920at 172.564 kb on + strand, within CSW01_00920at 172.613 kb on - strand, within CSW01_00920at 172.623 kb on - strand, within CSW01_00920at 172.635 kb on + strand, within CSW01_00920at 172.690 kb on + strand, within CSW01_00920at 172.690 kb on + strand, within CSW01_00920at 172.691 kb on - strand, within CSW01_00920at 172.697 kb on + strand, within CSW01_00920at 172.698 kb on - strand, within CSW01_00920at 172.705 kb on - strand, within CSW01_00920at 172.705 kb on - strand, within CSW01_00920at 172.707 kb on + strand, within CSW01_00920at 172.722 kb on + strand, within CSW01_00920at 172.722 kb on + strand, within CSW01_00920at 172.722 kb on + strand, within CSW01_00920at 172.722 kb on + strand, within CSW01_00920at 172.722 kb on + strand, within CSW01_00920at 172.722 kb on + strand, within CSW01_00920at 172.722 kb on + strand, within CSW01_00920at 172.730 kb on - strand, within CSW01_00920at 172.730 kb on - strand, within CSW01_00920at 172.730 kb on - strand, within CSW01_00920at 172.730 kb on - strand, within CSW01_00920at 172.730 kb on - strand, within CSW01_00920at 172.730 kb on - strand, within CSW01_00920at 172.730 kb on - strand, within CSW01_00920at 172.730 kb on - strand, within CSW01_00920at 172.730 kb on - strand, within CSW01_00920at 172.730 kb on - strand, within CSW01_00920at 172.730 kb on - strand, within CSW01_00920at 172.799 kb on + strand, within CSW01_00920at 172.814 kb on + strand, within CSW01_00920at 172.832 kb on - strand, within CSW01_00920at 172.833 kb on - strand, within CSW01_00920

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep2
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169,373 - CSW01_00910 0.49 -2.3
169,395 + CSW01_00910 0.50 -0.5
169,395 + CSW01_00910 0.50 -2.4
169,395 + CSW01_00910 0.50 +0.3
169,405 + CSW01_00910 0.51 +0.4
169,405 + CSW01_00910 0.51 -1.0
169,407 + CSW01_00910 0.51 -2.9
169,413 - CSW01_00910 0.51 -0.1
169,415 - CSW01_00910 0.51 -0.9
169,415 - CSW01_00910 0.51 +1.3
169,554 + CSW01_00910 0.59 -0.1
169,554 + CSW01_00910 0.59 +0.6
169,554 + CSW01_00910 0.59 -3.1
169,554 + CSW01_00910 0.59 +0.5
169,554 + CSW01_00910 0.59 +0.8
169,554 + CSW01_00910 0.59 +0.2
169,554 + CSW01_00910 0.59 +0.2
169,554 + CSW01_00910 0.59 -2.9
169,562 - CSW01_00910 0.60 -1.2
169,562 - CSW01_00910 0.60 +0.5
169,562 - CSW01_00910 0.60 -0.1
169,562 - CSW01_00910 0.60 +1.1
169,562 - CSW01_00910 0.60 +0.1
169,562 - CSW01_00910 0.60 +0.7
169,562 - CSW01_00910 0.60 -0.1
169,562 - CSW01_00910 0.60 +0.8
169,562 - CSW01_00910 0.60 +0.1
169,562 - CSW01_00910 0.60 +0.8
169,562 - CSW01_00910 0.60 -3.7
169,562 - CSW01_00910 0.60 +0.5
169,562 - CSW01_00910 0.60 +1.2
169,562 - CSW01_00910 0.60 +1.0
169,562 - CSW01_00910 0.60 +2.3
169,562 - CSW01_00910 0.60 -5.3
169,562 - CSW01_00910 0.60 -3.8
169,562 - CSW01_00910 0.60 +0.4
169,562 - CSW01_00910 0.60 +0.7
169,562 - CSW01_00910 0.60 -3.7
169,572 - CSW01_00910 0.61 -5.4
169,598 + CSW01_00910 0.62 -0.3
169,614 + CSW01_00910 0.63 -0.1
169,624 + CSW01_00910 0.64 -3.8
169,624 + CSW01_00910 0.64 -3.9
169,624 + CSW01_00910 0.64 +0.4
169,652 - CSW01_00910 0.65 -3.3
169,657 + CSW01_00910 0.66 +0.3
169,659 + CSW01_00910 0.66 -1.5
169,744 - CSW01_00910 0.71 +0.5
169,857 + CSW01_00910 0.77 -0.3
169,909 + CSW01_00910 0.80 -1.5
169,982 + CSW01_00910 0.84 +1.6
169,992 + CSW01_00910 0.85 +0.9
169,995 - CSW01_00910 0.85 -1.3
170,104 + -0.9
170,112 - -3.7
170,127 + -5.4
170,163 - +0.1
170,182 - -4.2
170,227 - -3.8
170,263 - -2.0
170,265 + +0.6
170,444 - -0.2
170,455 + -2.4
170,465 + +0.5
170,560 - CSW01_00915 0.14 -1.5
170,714 - CSW01_00915 0.24 +0.3
170,714 - CSW01_00915 0.24 -0.3
170,761 + CSW01_00915 0.27 +1.1
170,816 + CSW01_00915 0.31 +1.9
170,816 + CSW01_00915 0.31 +0.6
170,816 + CSW01_00915 0.31 -0.7
170,824 - CSW01_00915 0.31 +1.0
170,824 - CSW01_00915 0.31 +2.3
170,828 - CSW01_00915 0.31 +1.4
170,875 - CSW01_00915 0.34 -0.0
171,012 - CSW01_00915 0.43 -0.8
171,020 + CSW01_00915 0.44 -0.8
171,038 - CSW01_00915 0.45 -0.2
171,053 + CSW01_00915 0.46 -1.3
171,056 + CSW01_00915 0.46 +1.4
171,056 + CSW01_00915 0.46 +0.1
171,124 + CSW01_00915 0.50 +0.6
171,132 - CSW01_00915 0.51 +0.5
171,132 - CSW01_00915 0.51 +0.8
171,132 - CSW01_00915 0.51 -2.7
171,148 + CSW01_00915 0.52 -3.9
171,149 - CSW01_00915 0.52 -2.8
171,182 + CSW01_00915 0.54 +0.7
171,217 + CSW01_00915 0.56 -1.7
171,269 - CSW01_00915 0.60 +0.6
171,283 + CSW01_00915 0.61 -0.9
171,293 + CSW01_00915 0.61 -0.7
171,337 - CSW01_00915 0.64 -1.1
171,340 + CSW01_00915 0.64 -1.4
171,340 + CSW01_00915 0.64 -3.7
171,399 + CSW01_00915 0.68 -0.1
171,401 - CSW01_00915 0.68 -0.4
171,402 - CSW01_00915 0.68 +1.1
171,402 - CSW01_00915 0.68 -0.7
171,407 - CSW01_00915 0.69 -3.9
171,412 - CSW01_00915 0.69 -3.9
171,438 + CSW01_00915 0.71 +0.4
171,505 - CSW01_00915 0.75 +0.5
171,521 + CSW01_00915 0.76 -2.9
171,521 + CSW01_00915 0.76 -0.7
171,529 - CSW01_00915 0.76 -3.3
171,529 - CSW01_00915 0.76 +0.2
171,550 - CSW01_00915 0.78 +1.4
171,616 - CSW01_00915 0.82 +0.7
171,637 - CSW01_00915 0.83 -2.8
171,638 + CSW01_00915 0.83 -2.7
171,638 + CSW01_00915 0.83 +0.2
171,638 + CSW01_00915 0.83 -3.0
171,646 - CSW01_00915 0.84 -0.7
171,646 - CSW01_00915 0.84 -2.5
171,653 - CSW01_00915 0.84 -1.7
171,700 - CSW01_00915 0.87 -3.1
171,736 - CSW01_00915 0.90 -0.0
171,736 - CSW01_00915 0.90 -0.2
171,758 - +1.3
171,843 + -3.0
171,852 + +1.9
171,852 + +1.1
171,891 + -0.8
171,905 - -3.6
171,905 - -1.4
171,911 + -3.3
171,914 - +0.7
171,925 + -0.2
171,925 + +0.3
171,941 - -0.0
172,065 + +0.8
172,109 + -2.5
172,173 - CSW01_00920 0.12 -3.4
172,198 - CSW01_00920 0.15 -0.0
172,208 + CSW01_00920 0.16 -3.6
172,216 - CSW01_00920 0.17 +1.3
172,264 + CSW01_00920 0.22 +0.7
172,272 - CSW01_00920 0.23 +0.1
172,348 - CSW01_00920 0.30 -1.1
172,358 + CSW01_00920 0.31 -4.3
172,366 - CSW01_00920 0.32 -3.3
172,371 - CSW01_00920 0.33 -1.3
172,381 - CSW01_00920 0.34 +0.5
172,392 + CSW01_00920 0.35 +0.9
172,500 + CSW01_00920 0.46 +3.1
172,510 - CSW01_00920 0.47 +0.3
172,525 + CSW01_00920 0.48 -0.6
172,536 + CSW01_00920 0.50 -0.1
172,538 + CSW01_00920 0.50 -2.3
172,564 + CSW01_00920 0.52 -2.3
172,613 - CSW01_00920 0.57 +2.5
172,623 - CSW01_00920 0.58 +0.1
172,635 + CSW01_00920 0.60 +0.8
172,690 + CSW01_00920 0.65 +0.5
172,690 + CSW01_00920 0.65 +0.9
172,691 - CSW01_00920 0.65 +0.3
172,697 + CSW01_00920 0.66 -3.7
172,698 - CSW01_00920 0.66 -0.4
172,705 - CSW01_00920 0.67 -3.2
172,705 - CSW01_00920 0.67 +1.3
172,707 + CSW01_00920 0.67 +0.5
172,722 + CSW01_00920 0.69 +1.2
172,722 + CSW01_00920 0.69 +3.6
172,722 + CSW01_00920 0.69 -2.7
172,722 + CSW01_00920 0.69 -1.8
172,722 + CSW01_00920 0.69 +0.4
172,722 + CSW01_00920 0.69 +1.9
172,722 + CSW01_00920 0.69 -2.6
172,730 - CSW01_00920 0.69 -1.9
172,730 - CSW01_00920 0.69 +0.1
172,730 - CSW01_00920 0.69 -2.3
172,730 - CSW01_00920 0.69 -3.7
172,730 - CSW01_00920 0.69 -3.2
172,730 - CSW01_00920 0.69 -0.6
172,730 - CSW01_00920 0.69 -4.3
172,730 - CSW01_00920 0.69 +0.8
172,730 - CSW01_00920 0.69 -1.3
172,730 - CSW01_00920 0.69 -0.1
172,730 - CSW01_00920 0.69 +0.9
172,799 + CSW01_00920 0.76 -1.0
172,814 + CSW01_00920 0.78 +1.9
172,832 - CSW01_00920 0.80 +0.8
172,833 - CSW01_00920 0.80 -1.1

Or see this region's nucleotide sequence