Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_00805

Experiment: ICP3_phage_0.41_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_00800 and CSW01_00805 overlap by 35 nucleotidesCSW01_00805 and CSW01_00810 are separated by 550 nucleotides CSW01_00800: CSW01_00800 - glutamate racemase, at 149,279 to 150,076 _00800 CSW01_00805: CSW01_00805 - RNA-binding protein, at 150,042 to 150,500 _00805 CSW01_00810: CSW01_00810 - 16S ribosomal RNA, at 151,051 to 152,600 _00810 Position (kb) 150 151Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 149.223 kb on + strandat 150.071 kb on + strandat 150.095 kb on + strand, within CSW01_00805at 150.095 kb on + strand, within CSW01_00805at 150.095 kb on + strand, within CSW01_00805at 150.095 kb on + strand, within CSW01_00805at 150.103 kb on - strand, within CSW01_00805at 150.103 kb on - strand, within CSW01_00805at 150.103 kb on - strand, within CSW01_00805at 150.103 kb on - strand, within CSW01_00805at 150.153 kb on - strand, within CSW01_00805at 150.184 kb on - strand, within CSW01_00805at 150.189 kb on + strand, within CSW01_00805at 150.189 kb on + strand, within CSW01_00805at 150.197 kb on - strand, within CSW01_00805at 150.197 kb on - strand, within CSW01_00805at 150.226 kb on + strand, within CSW01_00805at 150.226 kb on + strand, within CSW01_00805at 150.255 kb on - strand, within CSW01_00805at 150.327 kb on - strand, within CSW01_00805at 150.383 kb on - strand, within CSW01_00805at 150.393 kb on - strand, within CSW01_00805at 150.420 kb on + strand, within CSW01_00805at 150.480 kb on - strandat 150.549 kb on - strandat 150.609 kb on + strandat 150.734 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep2
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149,223 + +0.5
150,071 + +0.3
150,095 + CSW01_00805 0.12 -3.3
150,095 + CSW01_00805 0.12 -0.4
150,095 + CSW01_00805 0.12 -2.1
150,095 + CSW01_00805 0.12 -0.1
150,103 - CSW01_00805 0.13 -2.6
150,103 - CSW01_00805 0.13 +1.3
150,103 - CSW01_00805 0.13 -0.6
150,103 - CSW01_00805 0.13 -0.7
150,153 - CSW01_00805 0.24 +0.3
150,184 - CSW01_00805 0.31 +1.4
150,189 + CSW01_00805 0.32 +1.1
150,189 + CSW01_00805 0.32 -2.9
150,197 - CSW01_00805 0.34 +0.8
150,197 - CSW01_00805 0.34 +2.5
150,226 + CSW01_00805 0.40 +1.2
150,226 + CSW01_00805 0.40 +2.6
150,255 - CSW01_00805 0.46 +1.3
150,327 - CSW01_00805 0.62 -3.2
150,383 - CSW01_00805 0.74 +0.6
150,393 - CSW01_00805 0.76 +0.5
150,420 + CSW01_00805 0.82 -0.2
150,480 - -0.2
150,549 - -2.4
150,609 + -1.7
150,734 + -0.7

Or see this region's nucleotide sequence