Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS23700

Experiment: L-Sorbose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS23695 and BWI76_RS23700 overlap by 4 nucleotidesBWI76_RS23700 and BWI76_RS23705 are separated by 2 nucleotidesBWI76_RS23705 and BWI76_RS23710 are separated by 11 nucleotides BWI76_RS23695: BWI76_RS23695 - deoxyribonyl-CoA synthetase (from data), at 4,945,145 to 4,946,701 _RS23695 BWI76_RS23700: BWI76_RS23700 - glycerate CoA-transferase (from data), at 4,946,698 to 4,948,299 _RS23700 BWI76_RS23705: BWI76_RS23705 - 2-deoxy-D-ribonyl-CoA 3-dehydrogenase (from data), at 4,948,302 to 4,949,036 _RS23705 BWI76_RS23710: BWI76_RS23710 - 3-keto-2-deoxy-D-ribonyl-CoA thiolase (from data), at 4,949,048 to 4,950,238 _RS23710 Position (kb) 4946 4947 4948 4949Strain fitness (log2 ratio) -1 0 1at 4945.734 kb on + strand, within BWI76_RS23695at 4946.116 kb on - strand, within BWI76_RS23695at 4946.116 kb on - strand, within BWI76_RS23695at 4946.288 kb on - strand, within BWI76_RS23695at 4946.519 kb on + strand, within BWI76_RS23695at 4946.527 kb on - strand, within BWI76_RS23695at 4946.867 kb on + strand, within BWI76_RS23700at 4946.875 kb on - strand, within BWI76_RS23700at 4946.879 kb on + strand, within BWI76_RS23700at 4947.527 kb on + strand, within BWI76_RS23700at 4947.527 kb on + strand, within BWI76_RS23700at 4947.535 kb on - strand, within BWI76_RS23700at 4947.686 kb on - strand, within BWI76_RS23700at 4947.728 kb on + strand, within BWI76_RS23700at 4947.760 kb on + strand, within BWI76_RS23700at 4947.808 kb on - strand, within BWI76_RS23700at 4948.120 kb on + strand, within BWI76_RS23700at 4948.368 kb on - strandat 4948.502 kb on + strand, within BWI76_RS23705at 4948.657 kb on + strand, within BWI76_RS23705at 4949.140 kb on + strandat 4949.173 kb on - strand, within BWI76_RS23710

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Sorbose (C)
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4,945,734 + BWI76_RS23695 0.38 +0.5
4,946,116 - BWI76_RS23695 0.62 +0.6
4,946,116 - BWI76_RS23695 0.62 +0.1
4,946,288 - BWI76_RS23695 0.73 +0.5
4,946,519 + BWI76_RS23695 0.88 -0.6
4,946,527 - BWI76_RS23695 0.89 +0.5
4,946,867 + BWI76_RS23700 0.11 +1.7
4,946,875 - BWI76_RS23700 0.11 +0.1
4,946,879 + BWI76_RS23700 0.11 +1.2
4,947,527 + BWI76_RS23700 0.52 +1.1
4,947,527 + BWI76_RS23700 0.52 +1.2
4,947,535 - BWI76_RS23700 0.52 +0.6
4,947,686 - BWI76_RS23700 0.62 +0.9
4,947,728 + BWI76_RS23700 0.64 -0.8
4,947,760 + BWI76_RS23700 0.66 -0.3
4,947,808 - BWI76_RS23700 0.69 -0.2
4,948,120 + BWI76_RS23700 0.89 +0.4
4,948,368 - -0.3
4,948,502 + BWI76_RS23705 0.27 +0.3
4,948,657 + BWI76_RS23705 0.48 -0.1
4,949,140 + +0.4
4,949,173 - BWI76_RS23710 0.10 -0.3

Or see this region's nucleotide sequence