Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS22380

Experiment: L-Sorbose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS22375 and BWI76_RS22380 are separated by 189 nucleotidesBWI76_RS22380 and BWI76_RS22385 are separated by 54 nucleotides BWI76_RS22375: BWI76_RS22375 - pectin acetylesterase, at 4,664,043 to 4,664,990 _RS22375 BWI76_RS22380: BWI76_RS22380 - 6-phospho-beta-glucosidase, at 4,665,180 to 4,666,580 _RS22380 BWI76_RS22385: BWI76_RS22385 - beta-1,4 mannanase, at 4,666,635 to 4,668,830 _RS22385 Position (kb) 4665 4666 4667Strain fitness (log2 ratio) -1 0 1 2at 4664.374 kb on - strand, within BWI76_RS22375at 4664.410 kb on + strand, within BWI76_RS22375at 4664.418 kb on - strand, within BWI76_RS22375at 4664.420 kb on + strand, within BWI76_RS22375at 4664.641 kb on - strand, within BWI76_RS22375at 4664.752 kb on - strand, within BWI76_RS22375at 4664.921 kb on - strandat 4665.021 kb on - strandat 4665.233 kb on - strandat 4665.283 kb on + strandat 4665.446 kb on - strand, within BWI76_RS22380at 4665.604 kb on - strand, within BWI76_RS22380at 4665.762 kb on + strand, within BWI76_RS22380at 4665.967 kb on + strand, within BWI76_RS22380at 4665.975 kb on - strand, within BWI76_RS22380at 4665.975 kb on - strand, within BWI76_RS22380at 4666.507 kb on - strandat 4667.091 kb on - strand, within BWI76_RS22385at 4667.091 kb on - strand, within BWI76_RS22385at 4667.269 kb on + strand, within BWI76_RS22385

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Sorbose (C)
remove
4,664,374 - BWI76_RS22375 0.35 +0.5
4,664,410 + BWI76_RS22375 0.39 -1.2
4,664,418 - BWI76_RS22375 0.40 +1.1
4,664,420 + BWI76_RS22375 0.40 -1.5
4,664,641 - BWI76_RS22375 0.63 -0.3
4,664,752 - BWI76_RS22375 0.75 +0.4
4,664,921 - -0.6
4,665,021 - +0.1
4,665,233 - +0.4
4,665,283 + -1.0
4,665,446 - BWI76_RS22380 0.19 +0.7
4,665,604 - BWI76_RS22380 0.30 +2.5
4,665,762 + BWI76_RS22380 0.42 +1.0
4,665,967 + BWI76_RS22380 0.56 +0.7
4,665,975 - BWI76_RS22380 0.57 +0.3
4,665,975 - BWI76_RS22380 0.57 -0.6
4,666,507 - -0.0
4,667,091 - BWI76_RS22385 0.21 -0.4
4,667,091 - BWI76_RS22385 0.21 -0.2
4,667,269 + BWI76_RS22385 0.29 +0.8

Or see this region's nucleotide sequence