Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS17520

Experiment: L-Sorbose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS17515 and BWI76_RS17520 are separated by 12 nucleotidesBWI76_RS17520 and BWI76_RS17525 are separated by 48 nucleotidesBWI76_RS17525 and BWI76_RS17530 overlap by 96 nucleotides BWI76_RS17515: BWI76_RS17515 - dihydropyrimidinase, at 3,632,423 to 3,633,829 _RS17515 BWI76_RS17520: BWI76_RS17520 - carbamate kinase, at 3,633,842 to 3,634,774 _RS17520 BWI76_RS17525: BWI76_RS17525 - XshC-Cox1-family protein, at 3,634,823 to 3,635,656 _RS17525 BWI76_RS17530: BWI76_RS17530 - hypothetical protein, at 3,635,561 to 3,635,938 _RS17530 Position (kb) 3633 3634 3635Strain fitness (log2 ratio) -2 -1 0 1 2at 3632.876 kb on - strand, within BWI76_RS17515at 3633.047 kb on - strand, within BWI76_RS17515at 3633.173 kb on - strandat 3633.284 kb on + strand, within BWI76_RS17515at 3633.354 kb on + strand, within BWI76_RS17515at 3633.904 kb on + strandat 3633.904 kb on + strandat 3634.180 kb on - strand, within BWI76_RS17520at 3634.396 kb on - strand, within BWI76_RS17520at 3634.433 kb on + strand, within BWI76_RS17520at 3634.472 kb on + strand, within BWI76_RS17520at 3634.782 kb on - strandat 3635.433 kb on - strand, within BWI76_RS17525at 3635.549 kb on + strand, within BWI76_RS17525at 3635.563 kb on + strandat 3635.571 kb on - strandat 3635.582 kb on + strandat 3635.590 kb on - strandat 3635.603 kb on + strandat 3635.613 kb on - strandat 3635.615 kb on + strandat 3635.623 kb on - strandat 3635.623 kb on - strandat 3635.623 kb on - strandat 3635.623 kb on - strandat 3635.631 kb on - strandat 3635.670 kb on - strand, within BWI76_RS17530at 3635.671 kb on - strand, within BWI76_RS17530at 3635.685 kb on + strand, within BWI76_RS17530at 3635.765 kb on + strand, within BWI76_RS17530

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Sorbose (C)
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3,632,876 - BWI76_RS17515 0.32 +0.4
3,633,047 - BWI76_RS17515 0.44 -2.0
3,633,173 - +0.8
3,633,284 + BWI76_RS17515 0.61 +0.3
3,633,354 + BWI76_RS17515 0.66 +0.5
3,633,904 + +0.8
3,633,904 + -0.7
3,634,180 - BWI76_RS17520 0.36 +0.1
3,634,396 - BWI76_RS17520 0.59 -0.8
3,634,433 + BWI76_RS17520 0.63 -0.4
3,634,472 + BWI76_RS17520 0.68 +0.2
3,634,782 - +0.2
3,635,433 - BWI76_RS17525 0.73 +1.2
3,635,549 + BWI76_RS17525 0.87 +0.9
3,635,563 + -0.3
3,635,571 - +0.0
3,635,582 + +0.7
3,635,590 - +1.0
3,635,603 + +1.9
3,635,613 - -0.8
3,635,615 + +0.2
3,635,623 - +1.2
3,635,623 - -0.2
3,635,623 - +1.2
3,635,623 - -0.6
3,635,631 - -0.5
3,635,670 - BWI76_RS17530 0.29 -2.0
3,635,671 - BWI76_RS17530 0.29 -1.8
3,635,685 + BWI76_RS17530 0.33 +2.4
3,635,765 + BWI76_RS17530 0.54 -0.5

Or see this region's nucleotide sequence