Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS07325

Experiment: L-Sorbose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS07320 and BWI76_RS07325 are separated by 165 nucleotidesBWI76_RS07325 and BWI76_RS07330 are separated by 352 nucleotides BWI76_RS07320: BWI76_RS07320 - carbohydrate porin, at 1,542,025 to 1,543,542 _RS07320 BWI76_RS07325: BWI76_RS07325 - aminoimidazole riboside kinase, at 1,543,708 to 1,544,631 _RS07325 BWI76_RS07330: BWI76_RS07330 - hypothetical protein, at 1,544,984 to 1,545,376 _RS07330 Position (kb) 1543 1544 1545Strain fitness (log2 ratio) -2 -1 0 1 2at 1542.748 kb on - strand, within BWI76_RS07320at 1542.933 kb on + strand, within BWI76_RS07320at 1543.915 kb on - strand, within BWI76_RS07325at 1543.915 kb on - strand, within BWI76_RS07325at 1543.984 kb on + strand, within BWI76_RS07325at 1544.127 kb on + strand, within BWI76_RS07325at 1544.247 kb on + strand, within BWI76_RS07325at 1544.250 kb on - strand, within BWI76_RS07325at 1544.321 kb on - strand, within BWI76_RS07325at 1544.361 kb on + strand, within BWI76_RS07325at 1544.461 kb on + strand, within BWI76_RS07325at 1544.783 kb on + strandat 1544.830 kb on + strandat 1544.839 kb on + strandat 1544.847 kb on - strandat 1544.848 kb on - strandat 1544.925 kb on + strandat 1544.925 kb on + strandat 1544.955 kb on - strandat 1544.963 kb on - strandat 1545.026 kb on + strand, within BWI76_RS07330at 1545.059 kb on + strand, within BWI76_RS07330at 1545.089 kb on + strand, within BWI76_RS07330at 1545.122 kb on + strand, within BWI76_RS07330at 1545.156 kb on - strand, within BWI76_RS07330at 1545.221 kb on + strand, within BWI76_RS07330at 1545.226 kb on + strand, within BWI76_RS07330at 1545.240 kb on - strand, within BWI76_RS07330at 1545.240 kb on - strand, within BWI76_RS07330at 1545.243 kb on + strand, within BWI76_RS07330at 1545.245 kb on + strand, within BWI76_RS07330at 1545.251 kb on - strand, within BWI76_RS07330at 1545.251 kb on - strand, within BWI76_RS07330at 1545.251 kb on - strand, within BWI76_RS07330at 1545.253 kb on + strand, within BWI76_RS07330at 1545.253 kb on + strand, within BWI76_RS07330at 1545.253 kb on + strand, within BWI76_RS07330at 1545.253 kb on + strand, within BWI76_RS07330at 1545.253 kb on + strand, within BWI76_RS07330at 1545.254 kb on + strand, within BWI76_RS07330at 1545.254 kb on + strand, within BWI76_RS07330at 1545.254 kb on + strand, within BWI76_RS07330at 1545.254 kb on + strandat 1545.256 kb on + strand, within BWI76_RS07330at 1545.261 kb on - strand, within BWI76_RS07330at 1545.262 kb on - strandat 1545.262 kb on - strand, within BWI76_RS07330at 1545.264 kb on + strand, within BWI76_RS07330at 1545.264 kb on + strand, within BWI76_RS07330at 1545.272 kb on - strand, within BWI76_RS07330at 1545.298 kb on + strand, within BWI76_RS07330at 1545.300 kb on + strand, within BWI76_RS07330at 1545.325 kb on + strand, within BWI76_RS07330at 1545.350 kb on - strandat 1545.350 kb on - strandat 1545.357 kb on + strandat 1545.357 kb on + strandat 1545.357 kb on + strandat 1545.357 kb on + strandat 1545.360 kb on - strandat 1545.385 kb on - strandat 1545.386 kb on - strandat 1545.486 kb on - strandat 1545.491 kb on + strandat 1545.491 kb on + strandat 1545.491 kb on + strandat 1545.491 kb on + strandat 1545.491 kb on + strandat 1545.494 kb on - strandat 1545.499 kb on - strandat 1545.499 kb on - strandat 1545.499 kb on - strandat 1545.500 kb on + strandat 1545.501 kb on + strandat 1545.501 kb on + strandat 1545.502 kb on + strandat 1545.502 kb on + strandat 1545.502 kb on + strandat 1545.502 kb on + strandat 1545.502 kb on + strandat 1545.502 kb on + strandat 1545.502 kb on + strandat 1545.508 kb on + strandat 1545.508 kb on + strandat 1545.509 kb on - strandat 1545.509 kb on - strandat 1545.510 kb on - strandat 1545.510 kb on - strandat 1545.510 kb on - strandat 1545.510 kb on - strandat 1545.510 kb on - strandat 1545.510 kb on - strandat 1545.510 kb on - strandat 1545.510 kb on - strandat 1545.510 kb on - strandat 1545.510 kb on - strandat 1545.510 kb on - strandat 1545.510 kb on - strandat 1545.519 kb on + strandat 1545.519 kb on + strandat 1545.519 kb on + strandat 1545.527 kb on - strandat 1545.571 kb on + strandat 1545.579 kb on - strandat 1545.589 kb on - strandat 1545.603 kb on + strandat 1545.611 kb on - strandat 1545.611 kb on - strandat 1545.616 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Sorbose (C)
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1,542,748 - BWI76_RS07320 0.48 -0.6
1,542,933 + BWI76_RS07320 0.60 +0.3
1,543,915 - BWI76_RS07325 0.22 -0.4
1,543,915 - BWI76_RS07325 0.22 -0.5
1,543,984 + BWI76_RS07325 0.30 +2.4
1,544,127 + BWI76_RS07325 0.45 -0.2
1,544,247 + BWI76_RS07325 0.58 -0.5
1,544,250 - BWI76_RS07325 0.59 -0.0
1,544,321 - BWI76_RS07325 0.66 +0.3
1,544,361 + BWI76_RS07325 0.71 +1.7
1,544,461 + BWI76_RS07325 0.81 +0.6
1,544,783 + +0.3
1,544,830 + +1.1
1,544,839 + +0.1
1,544,847 - +0.8
1,544,848 - +0.5
1,544,925 + -0.0
1,544,925 + -0.1
1,544,955 - +1.2
1,544,963 - -0.1
1,545,026 + BWI76_RS07330 0.11 -0.5
1,545,059 + BWI76_RS07330 0.19 +1.0
1,545,089 + BWI76_RS07330 0.27 +0.4
1,545,122 + BWI76_RS07330 0.35 +0.1
1,545,156 - BWI76_RS07330 0.44 -0.0
1,545,221 + BWI76_RS07330 0.60 +0.7
1,545,226 + BWI76_RS07330 0.62 +0.6
1,545,240 - BWI76_RS07330 0.65 +1.6
1,545,240 - BWI76_RS07330 0.65 +0.1
1,545,243 + BWI76_RS07330 0.66 +0.5
1,545,245 + BWI76_RS07330 0.66 -0.5
1,545,251 - BWI76_RS07330 0.68 -1.2
1,545,251 - BWI76_RS07330 0.68 +0.2
1,545,251 - BWI76_RS07330 0.68 -0.4
1,545,253 + BWI76_RS07330 0.68 +0.2
1,545,253 + BWI76_RS07330 0.68 -0.3
1,545,253 + BWI76_RS07330 0.68 -0.8
1,545,253 + BWI76_RS07330 0.68 +0.6
1,545,253 + BWI76_RS07330 0.68 +0.1
1,545,254 + BWI76_RS07330 0.69 -0.3
1,545,254 + BWI76_RS07330 0.69 +0.4
1,545,254 + BWI76_RS07330 0.69 +0.5
1,545,254 + +0.1
1,545,256 + BWI76_RS07330 0.69 -0.7
1,545,261 - BWI76_RS07330 0.70 +1.7
1,545,262 - +1.1
1,545,262 - BWI76_RS07330 0.71 +0.3
1,545,264 + BWI76_RS07330 0.71 -1.9
1,545,264 + BWI76_RS07330 0.71 +0.0
1,545,272 - BWI76_RS07330 0.73 -0.6
1,545,298 + BWI76_RS07330 0.80 -0.6
1,545,300 + BWI76_RS07330 0.80 +1.2
1,545,325 + BWI76_RS07330 0.87 +1.4
1,545,350 - +0.0
1,545,350 - +0.2
1,545,357 + -0.3
1,545,357 + +0.2
1,545,357 + -0.5
1,545,357 + +0.1
1,545,360 - -0.1
1,545,385 - -0.8
1,545,386 - +0.1
1,545,486 - +0.5
1,545,491 + +0.1
1,545,491 + -0.4
1,545,491 + -0.1
1,545,491 + -1.1
1,545,491 + +0.2
1,545,494 - +0.7
1,545,499 - -0.5
1,545,499 - -0.7
1,545,499 - +0.3
1,545,500 + -0.2
1,545,501 + +1.1
1,545,501 + -0.1
1,545,502 + -0.2
1,545,502 + +0.1
1,545,502 + -0.6
1,545,502 + +0.9
1,545,502 + +0.1
1,545,502 + +0.7
1,545,502 + +1.2
1,545,508 + +1.0
1,545,508 + -1.0
1,545,509 - +0.9
1,545,509 - -0.0
1,545,510 - -0.2
1,545,510 - -0.0
1,545,510 - -0.2
1,545,510 - -1.1
1,545,510 - +0.4
1,545,510 - +0.1
1,545,510 - -0.0
1,545,510 - +0.3
1,545,510 - -0.0
1,545,510 - -0.6
1,545,510 - -0.4
1,545,510 - +1.3
1,545,519 + -0.1
1,545,519 + -0.1
1,545,519 + +0.0
1,545,527 - -0.3
1,545,571 + -0.1
1,545,579 - +0.3
1,545,589 - -0.7
1,545,603 + +0.4
1,545,611 - -0.9
1,545,611 - +0.1
1,545,616 + -0.4

Or see this region's nucleotide sequence