Experiment: Ceftazidime 0.12 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_28050 and AO353_28055 are separated by 2 nucleotides AO353_28055 and AO353_28060 overlap by 4 nucleotides
AO353_28050: AO353_28050 - exonuclease SbcC, at 6,113,945 to 6,115,921
_28050
AO353_28055: AO353_28055 - hypothetical protein, at 6,115,924 to 6,116,496
_28055
AO353_28060: AO353_28060 - hypothetical protein, at 6,116,493 to 6,117,707
_28060
Position (kb)
6115
6116
6117 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 6115.172 kb on + strand, within AO353_28050 at 6115.323 kb on - strand, within AO353_28050 at 6115.654 kb on - strand, within AO353_28050 at 6115.669 kb on - strand, within AO353_28050 at 6115.670 kb on + strand, within AO353_28050 at 6115.831 kb on - strand at 6115.953 kb on - strand at 6116.136 kb on - strand, within AO353_28055 at 6116.142 kb on + strand, within AO353_28055 at 6116.143 kb on - strand, within AO353_28055 at 6116.143 kb on - strand, within AO353_28055 at 6116.197 kb on - strand, within AO353_28055 at 6116.276 kb on + strand, within AO353_28055 at 6116.473 kb on + strand at 6116.586 kb on + strand at 6116.735 kb on - strand, within AO353_28060 at 6116.735 kb on - strand, within AO353_28060 at 6116.767 kb on - strand, within AO353_28060 at 6116.970 kb on - strand, within AO353_28060 at 6116.989 kb on + strand, within AO353_28060 at 6117.063 kb on + strand, within AO353_28060 at 6117.125 kb on - strand, within AO353_28060 at 6117.178 kb on + strand, within AO353_28060 at 6117.178 kb on + strand, within AO353_28060 at 6117.179 kb on - strand, within AO353_28060 at 6117.181 kb on - strand, within AO353_28060 at 6117.181 kb on - strand, within AO353_28060 at 6117.181 kb on - strand, within AO353_28060 at 6117.222 kb on - strand, within AO353_28060 at 6117.222 kb on - strand, within AO353_28060 at 6117.294 kb on + strand, within AO353_28060 at 6117.362 kb on + strand, within AO353_28060 at 6117.393 kb on - strand, within AO353_28060 at 6117.403 kb on - strand, within AO353_28060
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 0.12 mg/ml remove 6,115,172 + AO353_28050 0.62 -0.9 6,115,323 - AO353_28050 0.70 +0.3 6,115,654 - AO353_28050 0.86 -0.7 6,115,669 - AO353_28050 0.87 -0.9 6,115,670 + AO353_28050 0.87 -2.0 6,115,831 - -0.4 6,115,953 - -0.8 6,116,136 - AO353_28055 0.37 +0.3 6,116,142 + AO353_28055 0.38 -0.1 6,116,143 - AO353_28055 0.38 -1.0 6,116,143 - AO353_28055 0.38 -2.0 6,116,197 - AO353_28055 0.48 -0.8 6,116,276 + AO353_28055 0.61 -1.3 6,116,473 + +1.0 6,116,586 + +1.3 6,116,735 - AO353_28060 0.20 -0.4 6,116,735 - AO353_28060 0.20 +0.5 6,116,767 - AO353_28060 0.23 +0.7 6,116,970 - AO353_28060 0.39 +0.3 6,116,989 + AO353_28060 0.41 +1.0 6,117,063 + AO353_28060 0.47 +0.0 6,117,125 - AO353_28060 0.52 -0.3 6,117,178 + AO353_28060 0.56 -1.0 6,117,178 + AO353_28060 0.56 -0.3 6,117,179 - AO353_28060 0.56 -0.7 6,117,181 - AO353_28060 0.57 +1.7 6,117,181 - AO353_28060 0.57 -1.0 6,117,181 - AO353_28060 0.57 +0.2 6,117,222 - AO353_28060 0.60 -1.5 6,117,222 - AO353_28060 0.60 +0.0 6,117,294 + AO353_28060 0.66 +0.1 6,117,362 + AO353_28060 0.72 -2.3 6,117,393 - AO353_28060 0.74 +0.1 6,117,403 - AO353_28060 0.75 +3.9
Or see this region's nucleotide sequence