Experiment: Ceftazidime 0.12 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_25300 and AO353_25305 are separated by 137 nucleotides AO353_25305 and AO353_25310 are separated by 1 nucleotides AO353_25310 and AO353_25315 are separated by 64 nucleotides AO353_25315 and AO353_25320 overlap by 4 nucleotides
AO353_25300: AO353_25300 - LysR family transcriptional regulator, at 5,582,205 to 5,583,119
_25300
AO353_25305: AO353_25305 - malonate transporter, at 5,583,257 to 5,584,021
_25305
AO353_25310: AO353_25310 - malonate carrier protein, at 5,584,023 to 5,584,439
_25310
AO353_25315: AO353_25315 - malonate decarboxylase subunit epsilon, at 5,584,504 to 5,585,424
_25315
AO353_25320: AO353_25320 - phosphoribosyl-dephospho-CoA transferase, at 5,585,421 to 5,586,041
_25320
Position (kb) 5584
5585 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5583.099 kb on + strand at 5583.099 kb on + strand at 5583.099 kb on + strand at 5583.100 kb on - strand at 5583.100 kb on - strand at 5583.100 kb on - strand at 5583.100 kb on - strand at 5583.100 kb on - strand at 5583.100 kb on - strand at 5583.100 kb on - strand at 5583.165 kb on + strand at 5583.165 kb on + strand at 5583.165 kb on + strand at 5583.165 kb on + strand at 5583.166 kb on - strand at 5583.166 kb on - strand at 5583.166 kb on - strand at 5583.190 kb on + strand at 5583.259 kb on - strand at 5583.285 kb on + strand at 5583.579 kb on + strand, within AO353_25305 at 5583.579 kb on + strand, within AO353_25305 at 5583.579 kb on + strand, within AO353_25305 at 5583.580 kb on - strand, within AO353_25305 at 5583.580 kb on - strand, within AO353_25305 at 5583.580 kb on - strand, within AO353_25305 at 5583.580 kb on - strand, within AO353_25305 at 5583.580 kb on - strand, within AO353_25305 at 5583.580 kb on - strand, within AO353_25305 at 5583.662 kb on - strand, within AO353_25305 at 5583.662 kb on - strand, within AO353_25305 at 5583.662 kb on - strand, within AO353_25305 at 5584.021 kb on + strand at 5584.021 kb on + strand at 5584.022 kb on - strand at 5584.022 kb on - strand at 5584.022 kb on - strand at 5584.022 kb on - strand at 5584.228 kb on + strand, within AO353_25310 at 5584.228 kb on + strand, within AO353_25310 at 5584.229 kb on - strand, within AO353_25310 at 5584.229 kb on - strand, within AO353_25310 at 5584.229 kb on - strand, within AO353_25310 at 5584.229 kb on - strand, within AO353_25310 at 5584.229 kb on - strand, within AO353_25310 at 5584.429 kb on + strand at 5584.429 kb on + strand at 5584.434 kb on - strand at 5584.434 kb on - strand at 5584.434 kb on - strand at 5584.434 kb on - strand at 5584.471 kb on + strand at 5584.471 kb on + strand at 5584.472 kb on - strand at 5584.675 kb on + strand, within AO353_25315 at 5584.826 kb on - strand, within AO353_25315 at 5585.199 kb on - strand, within AO353_25315 at 5585.208 kb on + strand, within AO353_25315 at 5585.208 kb on + strand, within AO353_25315 at 5585.208 kb on + strand, within AO353_25315 at 5585.208 kb on + strand, within AO353_25315 at 5585.208 kb on + strand, within AO353_25315 at 5585.209 kb on - strand, within AO353_25315 at 5585.209 kb on - strand, within AO353_25315 at 5585.209 kb on - strand, within AO353_25315 at 5585.209 kb on - strand, within AO353_25315 at 5585.209 kb on - strand, within AO353_25315 at 5585.308 kb on + strand, within AO353_25315
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 0.12 mg/ml remove 5,583,099 + -0.8 5,583,099 + +0.7 5,583,099 + +1.2 5,583,100 - +0.6 5,583,100 - +1.7 5,583,100 - +0.4 5,583,100 - -0.8 5,583,100 - +0.6 5,583,100 - -1.8 5,583,100 - +1.2 5,583,165 + +0.0 5,583,165 + -0.1 5,583,165 + -0.4 5,583,165 + -1.4 5,583,166 - -0.8 5,583,166 - +1.5 5,583,166 - -0.1 5,583,190 + +0.2 5,583,259 - +0.7 5,583,285 + -0.5 5,583,579 + AO353_25305 0.42 +2.7 5,583,579 + AO353_25305 0.42 -0.2 5,583,579 + AO353_25305 0.42 -0.4 5,583,580 - AO353_25305 0.42 -1.1 5,583,580 - AO353_25305 0.42 +1.0 5,583,580 - AO353_25305 0.42 -1.4 5,583,580 - AO353_25305 0.42 +0.0 5,583,580 - AO353_25305 0.42 -0.6 5,583,580 - AO353_25305 0.42 +2.0 5,583,662 - AO353_25305 0.53 -0.4 5,583,662 - AO353_25305 0.53 +1.4 5,583,662 - AO353_25305 0.53 -0.3 5,584,021 + -0.3 5,584,021 + +0.6 5,584,022 - +0.0 5,584,022 - +0.2 5,584,022 - +0.6 5,584,022 - -0.4 5,584,228 + AO353_25310 0.49 -0.2 5,584,228 + AO353_25310 0.49 +0.2 5,584,229 - AO353_25310 0.49 +0.2 5,584,229 - AO353_25310 0.49 -0.7 5,584,229 - AO353_25310 0.49 -1.1 5,584,229 - AO353_25310 0.49 -0.6 5,584,229 - AO353_25310 0.49 -1.7 5,584,429 + +0.8 5,584,429 + -0.8 5,584,434 - +1.7 5,584,434 - +0.2 5,584,434 - -0.8 5,584,434 - +0.8 5,584,471 + -0.7 5,584,471 + -0.1 5,584,472 - +1.6 5,584,675 + AO353_25315 0.19 +0.7 5,584,826 - AO353_25315 0.35 -0.2 5,585,199 - AO353_25315 0.75 -0.8 5,585,208 + AO353_25315 0.76 -0.3 5,585,208 + AO353_25315 0.76 +0.8 5,585,208 + AO353_25315 0.76 -1.4 5,585,208 + AO353_25315 0.76 +0.7 5,585,208 + AO353_25315 0.76 -0.3 5,585,209 - AO353_25315 0.77 +1.5 5,585,209 - AO353_25315 0.77 +0.2 5,585,209 - AO353_25315 0.77 -0.3 5,585,209 - AO353_25315 0.77 +0.2 5,585,209 - AO353_25315 0.77 +0.9 5,585,308 + AO353_25315 0.87 +0.7
Or see this region's nucleotide sequence