Experiment: Ceftazidime 0.12 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_25215 and AO353_25220 are separated by 79 nucleotides AO353_25220 and AO353_25225 are separated by 57 nucleotides AO353_25225 and AO353_25230 are separated by 30 nucleotides
AO353_25215: AO353_25215 - transcriptional regulator, at 5,563,787 to 5,564,722
_25215
AO353_25220: AO353_25220 - hypothetical protein, at 5,564,802 to 5,565,071
_25220
AO353_25225: AO353_25225 - hypothetical protein, at 5,565,129 to 5,565,398
_25225
AO353_25230: AO353_25230 - ATPase, at 5,565,429 to 5,566,097
_25230
Position (kb) 5564
5565
5566 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5563.804 kb on + strand at 5563.849 kb on + strand at 5563.849 kb on + strand at 5563.956 kb on + strand, within AO353_25215 at 5563.957 kb on - strand, within AO353_25215 at 5563.957 kb on - strand, within AO353_25215 at 5563.981 kb on - strand, within AO353_25215 at 5563.985 kb on - strand, within AO353_25215 at 5564.108 kb on + strand, within AO353_25215 at 5564.108 kb on + strand, within AO353_25215 at 5564.109 kb on - strand, within AO353_25215 at 5564.109 kb on - strand, within AO353_25215 at 5564.109 kb on - strand, within AO353_25215 at 5564.109 kb on - strand, within AO353_25215 at 5564.165 kb on - strand, within AO353_25215 at 5564.233 kb on + strand, within AO353_25215 at 5564.233 kb on + strand, within AO353_25215 at 5564.233 kb on + strand, within AO353_25215 at 5564.233 kb on + strand, within AO353_25215 at 5564.233 kb on + strand, within AO353_25215 at 5564.233 kb on + strand, within AO353_25215 at 5564.233 kb on + strand, within AO353_25215 at 5564.233 kb on + strand, within AO353_25215 at 5564.234 kb on - strand, within AO353_25215 at 5564.234 kb on - strand, within AO353_25215 at 5564.330 kb on + strand, within AO353_25215 at 5564.331 kb on - strand, within AO353_25215 at 5564.331 kb on - strand, within AO353_25215 at 5564.440 kb on - strand, within AO353_25215 at 5564.614 kb on + strand, within AO353_25215 at 5564.614 kb on + strand, within AO353_25215 at 5564.626 kb on + strand, within AO353_25215 at 5564.626 kb on + strand, within AO353_25215 at 5564.630 kb on + strand at 5564.630 kb on + strand at 5564.630 kb on + strand at 5564.630 kb on + strand at 5564.630 kb on + strand at 5564.630 kb on + strand at 5564.630 kb on + strand at 5564.630 kb on + strand at 5564.630 kb on + strand at 5564.630 kb on + strand at 5564.631 kb on - strand at 5564.631 kb on - strand at 5564.631 kb on - strand at 5564.631 kb on - strand at 5564.631 kb on - strand at 5564.636 kb on + strand at 5564.637 kb on - strand at 5564.639 kb on + strand at 5564.640 kb on - strand at 5564.716 kb on + strand at 5564.717 kb on - strand at 5564.717 kb on - strand at 5564.717 kb on - strand at 5564.717 kb on - strand at 5564.803 kb on + strand at 5564.803 kb on + strand at 5564.804 kb on - strand at 5564.804 kb on - strand at 5564.804 kb on - strand at 5564.827 kb on + strand at 5564.827 kb on + strand at 5564.827 kb on + strand at 5564.828 kb on - strand at 5564.828 kb on - strand at 5564.828 kb on - strand at 5564.828 kb on - strand at 5564.917 kb on + strand, within AO353_25220 at 5564.918 kb on - strand, within AO353_25220 at 5564.918 kb on - strand, within AO353_25220 at 5564.962 kb on + strand, within AO353_25220 at 5564.962 kb on + strand, within AO353_25220 at 5564.963 kb on - strand, within AO353_25220 at 5564.963 kb on - strand, within AO353_25220 at 5565.001 kb on - strand, within AO353_25220 at 5565.001 kb on - strand, within AO353_25220 at 5565.071 kb on + strand at 5565.071 kb on + strand at 5565.071 kb on + strand at 5565.071 kb on + strand at 5565.072 kb on - strand at 5565.072 kb on - strand at 5565.072 kb on - strand at 5565.076 kb on + strand at 5565.076 kb on + strand at 5565.077 kb on - strand at 5565.077 kb on - strand at 5565.077 kb on - strand at 5565.077 kb on - strand at 5565.078 kb on + strand at 5565.078 kb on + strand at 5565.078 kb on + strand at 5565.078 kb on + strand at 5565.078 kb on + strand at 5565.078 kb on + strand at 5565.079 kb on - strand at 5565.079 kb on - strand at 5565.079 kb on - strand at 5565.079 kb on - strand at 5565.079 kb on - strand at 5565.079 kb on - strand at 5565.079 kb on - strand at 5565.079 kb on - strand at 5565.086 kb on + strand at 5565.086 kb on + strand at 5565.087 kb on - strand at 5565.087 kb on - strand at 5565.087 kb on - strand at 5565.087 kb on - strand at 5565.087 kb on - strand at 5565.088 kb on + strand at 5565.088 kb on + strand at 5565.088 kb on + strand at 5565.088 kb on + strand at 5565.088 kb on + strand at 5565.088 kb on + strand at 5565.088 kb on + strand at 5565.088 kb on + strand at 5565.088 kb on + strand at 5565.089 kb on - strand at 5565.089 kb on - strand at 5565.089 kb on - strand at 5565.089 kb on - strand at 5565.089 kb on - strand at 5565.089 kb on - strand at 5565.089 kb on - strand at 5565.089 kb on - strand at 5565.089 kb on - strand at 5565.090 kb on + strand at 5565.090 kb on + strand at 5565.090 kb on + strand at 5565.090 kb on + strand at 5565.090 kb on + strand at 5565.090 kb on + strand at 5565.090 kb on + strand at 5565.090 kb on + strand at 5565.090 kb on + strand at 5565.090 kb on + strand at 5565.090 kb on + strand at 5565.091 kb on - strand at 5565.091 kb on - strand at 5565.091 kb on - strand at 5565.131 kb on - strand at 5565.198 kb on - strand, within AO353_25225 at 5565.198 kb on - strand, within AO353_25225 at 5565.217 kb on + strand, within AO353_25225 at 5565.217 kb on + strand, within AO353_25225 at 5565.218 kb on - strand, within AO353_25225 at 5565.218 kb on - strand, within AO353_25225 at 5565.221 kb on - strand, within AO353_25225 at 5565.221 kb on - strand, within AO353_25225 at 5565.221 kb on - strand, within AO353_25225 at 5565.314 kb on + strand, within AO353_25225 at 5565.315 kb on - strand, within AO353_25225 at 5565.339 kb on + strand, within AO353_25225 at 5565.340 kb on - strand, within AO353_25225 at 5565.344 kb on + strand at 5565.344 kb on + strand, within AO353_25225 at 5565.364 kb on + strand, within AO353_25225 at 5565.364 kb on + strand, within AO353_25225 at 5565.364 kb on + strand, within AO353_25225 at 5565.364 kb on + strand, within AO353_25225 at 5565.364 kb on + strand, within AO353_25225 at 5565.364 kb on + strand, within AO353_25225 at 5565.364 kb on + strand, within AO353_25225 at 5565.364 kb on + strand, within AO353_25225 at 5565.365 kb on - strand, within AO353_25225 at 5565.365 kb on - strand, within AO353_25225 at 5565.365 kb on - strand, within AO353_25225 at 5565.365 kb on - strand, within AO353_25225 at 5565.365 kb on - strand, within AO353_25225 at 5565.365 kb on - strand, within AO353_25225 at 5565.391 kb on + strand at 5565.391 kb on + strand at 5565.391 kb on + strand at 5565.391 kb on + strand at 5565.391 kb on + strand at 5565.392 kb on - strand at 5565.392 kb on - strand at 5565.392 kb on - strand at 5565.392 kb on - strand at 5565.392 kb on - strand at 5565.409 kb on + strand at 5565.409 kb on + strand at 5565.409 kb on + strand at 5565.409 kb on + strand at 5565.410 kb on - strand at 5565.410 kb on - strand at 5565.418 kb on - strand at 5565.434 kb on + strand at 5565.434 kb on + strand at 5565.434 kb on + strand at 5565.619 kb on + strand, within AO353_25230 at 5565.619 kb on + strand, within AO353_25230 at 5565.619 kb on + strand, within AO353_25230 at 5565.620 kb on - strand, within AO353_25230 at 5565.637 kb on + strand, within AO353_25230 at 5565.637 kb on + strand, within AO353_25230 at 5565.638 kb on - strand, within AO353_25230 at 5565.638 kb on - strand, within AO353_25230 at 5565.638 kb on - strand, within AO353_25230 at 5565.638 kb on - strand, within AO353_25230 at 5565.697 kb on + strand, within AO353_25230 at 5565.697 kb on + strand, within AO353_25230 at 5565.697 kb on + strand, within AO353_25230 at 5565.698 kb on - strand at 5565.698 kb on - strand, within AO353_25230 at 5565.698 kb on - strand, within AO353_25230 at 5565.901 kb on + strand, within AO353_25230 at 5565.901 kb on + strand, within AO353_25230 at 5565.902 kb on - strand, within AO353_25230 at 5565.902 kb on - strand, within AO353_25230 at 5565.914 kb on - strand, within AO353_25230 at 5566.000 kb on - strand, within AO353_25230 at 5566.027 kb on + strand, within AO353_25230 at 5566.028 kb on - strand, within AO353_25230 at 5566.028 kb on - strand, within AO353_25230
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 0.12 mg/ml remove 5,563,804 + -0.4 5,563,849 + -0.3 5,563,849 + +0.1 5,563,956 + AO353_25215 0.18 +0.5 5,563,957 - AO353_25215 0.18 +0.1 5,563,957 - AO353_25215 0.18 +1.1 5,563,981 - AO353_25215 0.21 -0.1 5,563,985 - AO353_25215 0.21 -2.2 5,564,108 + AO353_25215 0.34 +0.7 5,564,108 + AO353_25215 0.34 -0.0 5,564,109 - AO353_25215 0.34 -0.5 5,564,109 - AO353_25215 0.34 +3.0 5,564,109 - AO353_25215 0.34 +1.1 5,564,109 - AO353_25215 0.34 -1.3 5,564,165 - AO353_25215 0.40 -0.0 5,564,233 + AO353_25215 0.48 -0.4 5,564,233 + AO353_25215 0.48 -1.2 5,564,233 + AO353_25215 0.48 +0.1 5,564,233 + AO353_25215 0.48 +0.6 5,564,233 + AO353_25215 0.48 +0.1 5,564,233 + AO353_25215 0.48 +0.5 5,564,233 + AO353_25215 0.48 -0.9 5,564,233 + AO353_25215 0.48 -0.3 5,564,234 - AO353_25215 0.48 +0.6 5,564,234 - AO353_25215 0.48 +0.6 5,564,330 + AO353_25215 0.58 +1.1 5,564,331 - AO353_25215 0.58 +1.1 5,564,331 - AO353_25215 0.58 +0.4 5,564,440 - AO353_25215 0.70 +0.1 5,564,614 + AO353_25215 0.88 +1.7 5,564,614 + AO353_25215 0.88 +1.2 5,564,626 + AO353_25215 0.90 -0.9 5,564,626 + AO353_25215 0.90 -1.3 5,564,630 + +0.7 5,564,630 + -0.4 5,564,630 + +0.8 5,564,630 + -0.3 5,564,630 + +0.6 5,564,630 + -1.0 5,564,630 + +0.8 5,564,630 + +0.6 5,564,630 + +1.5 5,564,630 + +0.5 5,564,631 - -3.0 5,564,631 - -0.9 5,564,631 - -0.3 5,564,631 - -0.2 5,564,631 - -1.9 5,564,636 + -0.5 5,564,637 - +0.0 5,564,639 + -0.4 5,564,640 - +0.6 5,564,716 + -0.9 5,564,717 - -1.9 5,564,717 - +0.9 5,564,717 - +0.6 5,564,717 - +0.6 5,564,803 + +0.5 5,564,803 + +1.0 5,564,804 - -0.9 5,564,804 - +0.7 5,564,804 - +0.1 5,564,827 + +0.8 5,564,827 + -0.9 5,564,827 + +0.5 5,564,828 - +1.0 5,564,828 - -0.2 5,564,828 - -3.3 5,564,828 - -1.9 5,564,917 + AO353_25220 0.43 -0.3 5,564,918 - AO353_25220 0.43 -1.4 5,564,918 - AO353_25220 0.43 +0.5 5,564,962 + AO353_25220 0.59 -0.9 5,564,962 + AO353_25220 0.59 +0.9 5,564,963 - AO353_25220 0.60 -2.4 5,564,963 - AO353_25220 0.60 -0.4 5,565,001 - AO353_25220 0.74 -1.2 5,565,001 - AO353_25220 0.74 -0.0 5,565,071 + +0.1 5,565,071 + -0.1 5,565,071 + -0.9 5,565,071 + -1.4 5,565,072 - -1.0 5,565,072 - -1.4 5,565,072 - +0.4 5,565,076 + +0.5 5,565,076 + -0.9 5,565,077 - +0.1 5,565,077 - +1.5 5,565,077 - +0.0 5,565,077 - +0.1 5,565,078 + +0.1 5,565,078 + -0.3 5,565,078 + +0.5 5,565,078 + -1.3 5,565,078 + -0.7 5,565,078 + -1.3 5,565,079 - -0.9 5,565,079 - -0.5 5,565,079 - -0.7 5,565,079 - +0.1 5,565,079 - -2.2 5,565,079 - -0.8 5,565,079 - -0.0 5,565,079 - +1.6 5,565,086 + +0.6 5,565,086 + +1.5 5,565,087 - +1.1 5,565,087 - +0.6 5,565,087 - +0.6 5,565,087 - +2.1 5,565,087 - -1.0 5,565,088 + +0.4 5,565,088 + +0.6 5,565,088 + +0.6 5,565,088 + -0.9 5,565,088 + +0.3 5,565,088 + +0.1 5,565,088 + -0.9 5,565,088 + +0.3 5,565,088 + +0.6 5,565,089 - -0.7 5,565,089 - -0.9 5,565,089 - -0.1 5,565,089 - +0.1 5,565,089 - +3.1 5,565,089 - +0.1 5,565,089 - +2.5 5,565,089 - +0.8 5,565,089 - +1.2 5,565,090 + +0.0 5,565,090 + -0.3 5,565,090 + -1.9 5,565,090 + -0.7 5,565,090 + +0.3 5,565,090 + -1.7 5,565,090 + +0.6 5,565,090 + +0.8 5,565,090 + +1.5 5,565,090 + -0.6 5,565,090 + -0.7 5,565,091 - -0.6 5,565,091 - -0.2 5,565,091 - +1.5 5,565,131 - -0.7 5,565,198 - AO353_25225 0.26 -2.2 5,565,198 - AO353_25225 0.26 -2.2 5,565,217 + AO353_25225 0.33 +0.1 5,565,217 + AO353_25225 0.33 +0.3 5,565,218 - AO353_25225 0.33 -1.4 5,565,218 - AO353_25225 0.33 +0.6 5,565,221 - AO353_25225 0.34 +0.7 5,565,221 - AO353_25225 0.34 +1.7 5,565,221 - AO353_25225 0.34 +0.8 5,565,314 + AO353_25225 0.69 -0.4 5,565,315 - AO353_25225 0.69 -0.3 5,565,339 + AO353_25225 0.78 -1.6 5,565,340 - AO353_25225 0.78 +0.7 5,565,344 + +1.7 5,565,344 + AO353_25225 0.80 +0.1 5,565,364 + AO353_25225 0.87 -0.3 5,565,364 + AO353_25225 0.87 -0.2 5,565,364 + AO353_25225 0.87 +0.3 5,565,364 + AO353_25225 0.87 +0.8 5,565,364 + AO353_25225 0.87 +0.6 5,565,364 + AO353_25225 0.87 +0.4 5,565,364 + AO353_25225 0.87 -0.1 5,565,364 + AO353_25225 0.87 +0.5 5,565,365 - AO353_25225 0.87 +0.6 5,565,365 - AO353_25225 0.87 -1.7 5,565,365 - AO353_25225 0.87 +2.3 5,565,365 - AO353_25225 0.87 -0.3 5,565,365 - AO353_25225 0.87 -0.6 5,565,365 - AO353_25225 0.87 +2.6 5,565,391 + +0.3 5,565,391 + -1.2 5,565,391 + -0.3 5,565,391 + +0.0 5,565,391 + +0.4 5,565,392 - -1.9 5,565,392 - +0.7 5,565,392 - +0.9 5,565,392 - -0.7 5,565,392 - +0.9 5,565,409 + -1.2 5,565,409 + +0.2 5,565,409 + -0.5 5,565,409 + +0.6 5,565,410 - -1.2 5,565,410 - +0.9 5,565,418 - +0.1 5,565,434 + +0.5 5,565,434 + -1.2 5,565,434 + +0.1 5,565,619 + AO353_25230 0.28 +0.1 5,565,619 + AO353_25230 0.28 +0.1 5,565,619 + AO353_25230 0.28 -0.1 5,565,620 - AO353_25230 0.29 -0.9 5,565,637 + AO353_25230 0.31 -0.9 5,565,637 + AO353_25230 0.31 +1.7 5,565,638 - AO353_25230 0.31 +0.1 5,565,638 - AO353_25230 0.31 -0.4 5,565,638 - AO353_25230 0.31 +0.3 5,565,638 - AO353_25230 0.31 +0.7 5,565,697 + AO353_25230 0.40 -0.4 5,565,697 + AO353_25230 0.40 +2.0 5,565,697 + AO353_25230 0.40 +0.6 5,565,698 - +0.1 5,565,698 - AO353_25230 0.40 -0.0 5,565,698 - AO353_25230 0.40 -1.2 5,565,901 + AO353_25230 0.71 -0.7 5,565,901 + AO353_25230 0.71 -0.2 5,565,902 - AO353_25230 0.71 -0.7 5,565,902 - AO353_25230 0.71 +0.1 5,565,914 - AO353_25230 0.72 -0.3 5,566,000 - AO353_25230 0.85 +0.1 5,566,027 + AO353_25230 0.89 -0.6 5,566,028 - AO353_25230 0.90 -0.3 5,566,028 - AO353_25230 0.90 -0.6
Or see this region's nucleotide sequence