Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_20775

Experiment: Ceftazidime 0.12 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_20765 and AO353_20770 are separated by 159 nucleotidesAO353_20770 and AO353_20775 are separated by 250 nucleotidesAO353_20775 and AO353_20780 are separated by 188 nucleotidesAO353_20780 and AO353_20785 are separated by 229 nucleotides AO353_20765: AO353_20765 - NADPH-dependent FMN reductase, at 4,551,344 to 4,551,892 _20765 AO353_20770: AO353_20770 - hypothetical protein, at 4,552,052 to 4,552,252 _20770 AO353_20775: AO353_20775 - alpha/beta hydrolase, at 4,552,503 to 4,553,204 _20775 AO353_20780: AO353_20780 - hypothetical protein, at 4,553,393 to 4,553,848 _20780 AO353_20785: AO353_20785 - carbon storage regulator CsrA, at 4,554,078 to 4,554,272 _20785 Position (kb) 4552 4553 4554Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4551.708 kb on + strand, within AO353_20765at 4551.708 kb on + strand, within AO353_20765at 4551.708 kb on + strand, within AO353_20765at 4551.709 kb on - strand, within AO353_20765at 4551.709 kb on - strand, within AO353_20765at 4551.709 kb on - strand, within AO353_20765at 4551.733 kb on + strand, within AO353_20765at 4551.733 kb on + strand, within AO353_20765at 4551.772 kb on + strand, within AO353_20765at 4551.951 kb on + strandat 4551.951 kb on + strandat 4551.951 kb on + strandat 4551.952 kb on - strandat 4551.952 kb on - strandat 4551.952 kb on - strandat 4552.020 kb on + strandat 4552.020 kb on + strandat 4552.021 kb on - strandat 4552.021 kb on - strandat 4552.021 kb on - strandat 4552.021 kb on - strandat 4552.021 kb on - strandat 4552.029 kb on + strandat 4552.030 kb on - strandat 4552.051 kb on + strandat 4552.052 kb on - strandat 4552.052 kb on - strandat 4552.078 kb on + strand, within AO353_20770at 4552.078 kb on + strand, within AO353_20770at 4552.078 kb on + strand, within AO353_20770at 4552.079 kb on - strand, within AO353_20770at 4552.079 kb on - strand, within AO353_20770at 4552.079 kb on - strand, within AO353_20770at 4552.079 kb on - strand, within AO353_20770at 4552.109 kb on + strand, within AO353_20770at 4552.110 kb on - strand, within AO353_20770at 4552.110 kb on - strand, within AO353_20770at 4552.197 kb on + strand, within AO353_20770at 4552.197 kb on + strand, within AO353_20770at 4552.197 kb on + strand, within AO353_20770at 4552.198 kb on - strand, within AO353_20770at 4552.198 kb on - strand, within AO353_20770at 4552.198 kb on - strand, within AO353_20770at 4552.250 kb on + strandat 4552.250 kb on + strandat 4552.251 kb on - strandat 4552.430 kb on + strandat 4552.464 kb on - strandat 4552.465 kb on + strandat 4552.465 kb on + strandat 4552.465 kb on + strandat 4552.466 kb on - strandat 4552.466 kb on - strandat 4552.596 kb on + strand, within AO353_20775at 4552.596 kb on + strand, within AO353_20775at 4552.596 kb on + strand, within AO353_20775at 4552.596 kb on + strand, within AO353_20775at 4552.596 kb on + strand, within AO353_20775at 4552.596 kb on + strand, within AO353_20775at 4552.597 kb on - strand, within AO353_20775at 4552.597 kb on - strand, within AO353_20775at 4552.597 kb on - strand, within AO353_20775at 4552.597 kb on - strand, within AO353_20775at 4552.597 kb on - strand, within AO353_20775at 4552.597 kb on - strand, within AO353_20775at 4552.597 kb on - strand, within AO353_20775at 4552.641 kb on + strand, within AO353_20775at 4552.669 kb on + strand, within AO353_20775at 4552.669 kb on + strand, within AO353_20775at 4552.669 kb on + strand, within AO353_20775at 4552.670 kb on - strand, within AO353_20775at 4552.670 kb on - strand, within AO353_20775at 4552.670 kb on - strand, within AO353_20775at 4552.818 kb on + strand, within AO353_20775at 4552.818 kb on + strand, within AO353_20775at 4552.821 kb on + strand, within AO353_20775at 4552.821 kb on + strand, within AO353_20775at 4552.821 kb on + strand, within AO353_20775at 4552.821 kb on + strand, within AO353_20775at 4552.821 kb on + strand, within AO353_20775at 4552.821 kb on + strand, within AO353_20775at 4552.821 kb on + strand, within AO353_20775at 4552.821 kb on + strand, within AO353_20775at 4552.822 kb on - strand, within AO353_20775at 4552.822 kb on - strand, within AO353_20775at 4552.822 kb on - strand, within AO353_20775at 4552.822 kb on - strand, within AO353_20775at 4552.822 kb on - strand, within AO353_20775at 4552.822 kb on - strand, within AO353_20775at 4552.890 kb on + strand, within AO353_20775at 4552.890 kb on + strand, within AO353_20775at 4552.890 kb on + strand, within AO353_20775at 4552.911 kb on + strand, within AO353_20775at 4552.911 kb on + strand, within AO353_20775at 4552.911 kb on + strand, within AO353_20775at 4552.911 kb on + strand, within AO353_20775at 4552.911 kb on + strand, within AO353_20775at 4552.912 kb on - strand, within AO353_20775at 4552.912 kb on - strand, within AO353_20775at 4552.912 kb on - strand, within AO353_20775at 4552.929 kb on + strand, within AO353_20775at 4552.929 kb on + strand, within AO353_20775at 4552.929 kb on + strand, within AO353_20775at 4552.929 kb on + strand, within AO353_20775at 4552.930 kb on - strand, within AO353_20775at 4552.930 kb on - strand, within AO353_20775at 4552.930 kb on - strand, within AO353_20775at 4553.043 kb on + strand, within AO353_20775at 4553.043 kb on + strand, within AO353_20775at 4553.043 kb on + strand, within AO353_20775at 4553.043 kb on + strand, within AO353_20775at 4553.043 kb on + strand, within AO353_20775at 4553.044 kb on - strand, within AO353_20775at 4553.062 kb on + strand, within AO353_20775at 4553.063 kb on - strand, within AO353_20775at 4553.130 kb on + strand, within AO353_20775at 4553.131 kb on - strand, within AO353_20775at 4553.131 kb on - strand, within AO353_20775at 4553.260 kb on + strandat 4553.263 kb on + strandat 4553.264 kb on - strandat 4553.344 kb on + strandat 4553.345 kb on - strandat 4553.345 kb on - strandat 4553.347 kb on + strandat 4553.347 kb on + strandat 4553.347 kb on + strandat 4553.347 kb on + strandat 4553.347 kb on + strandat 4553.347 kb on + strandat 4553.347 kb on + strandat 4553.348 kb on - strandat 4553.348 kb on - strandat 4553.348 kb on - strandat 4553.348 kb on - strandat 4553.348 kb on - strandat 4553.348 kb on - strandat 4553.353 kb on + strandat 4553.353 kb on + strandat 4553.362 kb on + strandat 4553.363 kb on - strandat 4553.363 kb on - strandat 4553.363 kb on - strandat 4553.366 kb on + strandat 4553.367 kb on - strandat 4553.367 kb on - strandat 4553.435 kb on + strandat 4553.530 kb on + strand, within AO353_20780at 4553.530 kb on + strand, within AO353_20780at 4553.531 kb on - strand, within AO353_20780at 4553.612 kb on + strandat 4553.613 kb on - strand, within AO353_20780at 4553.613 kb on - strand, within AO353_20780at 4553.613 kb on - strand, within AO353_20780at 4553.613 kb on - strand, within AO353_20780at 4553.613 kb on - strand, within AO353_20780at 4553.613 kb on - strand, within AO353_20780at 4553.613 kb on - strand, within AO353_20780at 4553.615 kb on + strand, within AO353_20780at 4553.615 kb on + strand, within AO353_20780at 4553.616 kb on - strand, within AO353_20780at 4553.616 kb on - strand, within AO353_20780at 4553.616 kb on - strand, within AO353_20780at 4553.653 kb on - strand, within AO353_20780at 4553.653 kb on - strand, within AO353_20780at 4553.653 kb on - strand, within AO353_20780at 4553.909 kb on + strandat 4553.909 kb on + strandat 4553.910 kb on - strandat 4553.910 kb on - strandat 4553.910 kb on - strandat 4553.930 kb on + strandat 4553.931 kb on - strandat 4553.931 kb on - strandat 4553.954 kb on + strandat 4553.954 kb on + strandat 4553.955 kb on - strandat 4553.955 kb on - strandat 4554.107 kb on + strand, within AO353_20785at 4554.122 kb on + strand, within AO353_20785at 4554.122 kb on + strand, within AO353_20785at 4554.123 kb on - strand, within AO353_20785at 4554.123 kb on - strand, within AO353_20785at 4554.123 kb on - strand, within AO353_20785at 4554.123 kb on - strand, within AO353_20785at 4554.123 kb on - strand, within AO353_20785at 4554.130 kb on + strand, within AO353_20785at 4554.131 kb on - strand, within AO353_20785

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Per-strain Table

Position Strand Gene LocusTag Fraction Ceftazidime 0.12 mg/ml
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4,551,708 + AO353_20765 0.66 -0.1
4,551,708 + AO353_20765 0.66 -0.7
4,551,708 + AO353_20765 0.66 -1.7
4,551,709 - AO353_20765 0.66 -1.1
4,551,709 - AO353_20765 0.66 +1.4
4,551,709 - AO353_20765 0.66 +0.1
4,551,733 + AO353_20765 0.71 -3.4
4,551,733 + AO353_20765 0.71 -0.3
4,551,772 + AO353_20765 0.78 -0.0
4,551,951 + +0.0
4,551,951 + -0.6
4,551,951 + -0.4
4,551,952 - -0.9
4,551,952 - -0.7
4,551,952 - -0.6
4,552,020 + -0.1
4,552,020 + +0.4
4,552,021 - -0.6
4,552,021 - +0.9
4,552,021 - -1.1
4,552,021 - +0.2
4,552,021 - -0.6
4,552,029 + +1.0
4,552,030 - +0.6
4,552,051 + +0.6
4,552,052 - -1.6
4,552,052 - -1.1
4,552,078 + AO353_20770 0.13 -0.3
4,552,078 + AO353_20770 0.13 -2.1
4,552,078 + AO353_20770 0.13 +1.2
4,552,079 - AO353_20770 0.13 +1.0
4,552,079 - AO353_20770 0.13 -0.1
4,552,079 - AO353_20770 0.13 -1.1
4,552,079 - AO353_20770 0.13 +2.0
4,552,109 + AO353_20770 0.28 -0.1
4,552,110 - AO353_20770 0.29 +0.9
4,552,110 - AO353_20770 0.29 +1.0
4,552,197 + AO353_20770 0.72 +1.7
4,552,197 + AO353_20770 0.72 -0.8
4,552,197 + AO353_20770 0.72 -0.2
4,552,198 - AO353_20770 0.73 +0.6
4,552,198 - AO353_20770 0.73 +0.4
4,552,198 - AO353_20770 0.73 +1.6
4,552,250 + +1.0
4,552,250 + -0.7
4,552,251 - +0.9
4,552,430 + +0.1
4,552,464 - -1.1
4,552,465 + -1.2
4,552,465 + -0.6
4,552,465 + -0.3
4,552,466 - -1.2
4,552,466 - +0.2
4,552,596 + AO353_20775 0.13 +0.1
4,552,596 + AO353_20775 0.13 +0.4
4,552,596 + AO353_20775 0.13 -2.4
4,552,596 + AO353_20775 0.13 -2.1
4,552,596 + AO353_20775 0.13 -1.1
4,552,596 + AO353_20775 0.13 -0.6
4,552,597 - AO353_20775 0.13 +0.4
4,552,597 - AO353_20775 0.13 -0.6
4,552,597 - AO353_20775 0.13 -0.8
4,552,597 - AO353_20775 0.13 -1.1
4,552,597 - AO353_20775 0.13 +0.7
4,552,597 - AO353_20775 0.13 +0.7
4,552,597 - AO353_20775 0.13 -0.7
4,552,641 + AO353_20775 0.20 +0.7
4,552,669 + AO353_20775 0.24 +1.4
4,552,669 + AO353_20775 0.24 +0.1
4,552,669 + AO353_20775 0.24 -2.1
4,552,670 - AO353_20775 0.24 +1.6
4,552,670 - AO353_20775 0.24 +0.0
4,552,670 - AO353_20775 0.24 -0.2
4,552,818 + AO353_20775 0.45 -0.3
4,552,818 + AO353_20775 0.45 +1.9
4,552,821 + AO353_20775 0.45 -0.6
4,552,821 + AO353_20775 0.45 +0.1
4,552,821 + AO353_20775 0.45 -1.6
4,552,821 + AO353_20775 0.45 -1.1
4,552,821 + AO353_20775 0.45 -0.7
4,552,821 + AO353_20775 0.45 -1.2
4,552,821 + AO353_20775 0.45 +0.4
4,552,821 + AO353_20775 0.45 +0.2
4,552,822 - AO353_20775 0.45 -0.0
4,552,822 - AO353_20775 0.45 +0.4
4,552,822 - AO353_20775 0.45 -2.7
4,552,822 - AO353_20775 0.45 -0.6
4,552,822 - AO353_20775 0.45 +0.1
4,552,822 - AO353_20775 0.45 +0.9
4,552,890 + AO353_20775 0.55 -1.6
4,552,890 + AO353_20775 0.55 -1.0
4,552,890 + AO353_20775 0.55 -1.6
4,552,911 + AO353_20775 0.58 +0.1
4,552,911 + AO353_20775 0.58 -0.1
4,552,911 + AO353_20775 0.58 +0.2
4,552,911 + AO353_20775 0.58 +1.1
4,552,911 + AO353_20775 0.58 +0.0
4,552,912 - AO353_20775 0.58 +0.6
4,552,912 - AO353_20775 0.58 -0.1
4,552,912 - AO353_20775 0.58 -0.6
4,552,929 + AO353_20775 0.61 +0.2
4,552,929 + AO353_20775 0.61 -0.1
4,552,929 + AO353_20775 0.61 +0.7
4,552,929 + AO353_20775 0.61 +0.4
4,552,930 - AO353_20775 0.61 +0.0
4,552,930 - AO353_20775 0.61 -2.4
4,552,930 - AO353_20775 0.61 +0.4
4,553,043 + AO353_20775 0.77 +2.6
4,553,043 + AO353_20775 0.77 -0.1
4,553,043 + AO353_20775 0.77 -0.1
4,553,043 + AO353_20775 0.77 -0.1
4,553,043 + AO353_20775 0.77 +1.7
4,553,044 - AO353_20775 0.77 -0.5
4,553,062 + AO353_20775 0.80 -1.4
4,553,063 - AO353_20775 0.80 +0.4
4,553,130 + AO353_20775 0.89 -0.1
4,553,131 - AO353_20775 0.89 +0.1
4,553,131 - AO353_20775 0.89 -1.1
4,553,260 + +1.3
4,553,263 + -2.1
4,553,264 - -0.6
4,553,344 + -1.1
4,553,345 - -0.3
4,553,345 - -0.9
4,553,347 + +0.9
4,553,347 + +0.8
4,553,347 + -0.6
4,553,347 + -0.2
4,553,347 + +0.2
4,553,347 + +0.7
4,553,347 + -0.8
4,553,348 - -1.1
4,553,348 - +0.4
4,553,348 - -0.6
4,553,348 - -1.3
4,553,348 - -0.6
4,553,348 - -1.6
4,553,353 + -1.1
4,553,353 + +0.2
4,553,362 + +2.0
4,553,363 - +0.8
4,553,363 - -0.6
4,553,363 - -1.7
4,553,366 + -0.6
4,553,367 - -1.0
4,553,367 - -0.1
4,553,435 + +0.4
4,553,530 + AO353_20780 0.30 +0.7
4,553,530 + AO353_20780 0.30 -0.1
4,553,531 - AO353_20780 0.30 +1.0
4,553,612 + +0.4
4,553,613 - AO353_20780 0.48 -0.2
4,553,613 - AO353_20780 0.48 +1.1
4,553,613 - AO353_20780 0.48 +1.4
4,553,613 - AO353_20780 0.48 +0.3
4,553,613 - AO353_20780 0.48 -0.6
4,553,613 - AO353_20780 0.48 -0.3
4,553,613 - AO353_20780 0.48 +0.9
4,553,615 + AO353_20780 0.49 -1.9
4,553,615 + AO353_20780 0.49 -0.1
4,553,616 - AO353_20780 0.49 +0.1
4,553,616 - AO353_20780 0.49 -0.1
4,553,616 - AO353_20780 0.49 +2.0
4,553,653 - AO353_20780 0.57 -1.4
4,553,653 - AO353_20780 0.57 -0.1
4,553,653 - AO353_20780 0.57 +0.4
4,553,909 + +0.1
4,553,909 + +0.8
4,553,910 - +3.2
4,553,910 - +1.4
4,553,910 - +1.2
4,553,930 + -0.9
4,553,931 - -0.1
4,553,931 - +0.6
4,553,954 + +0.4
4,553,954 + -2.4
4,553,955 - +0.1
4,553,955 - +0.4
4,554,107 + AO353_20785 0.15 -0.3
4,554,122 + AO353_20785 0.23 -0.9
4,554,122 + AO353_20785 0.23 +0.4
4,554,123 - AO353_20785 0.23 +1.0
4,554,123 - AO353_20785 0.23 -1.9
4,554,123 - AO353_20785 0.23 +0.9
4,554,123 - AO353_20785 0.23 -1.9
4,554,123 - AO353_20785 0.23 -1.8
4,554,130 + AO353_20785 0.27 -0.6
4,554,131 - AO353_20785 0.27 -0.8

Or see this region's nucleotide sequence