Experiment: Ceftazidime 0.12 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_16035 and AO353_16040 are separated by 651 nucleotides AO353_16040 and AO353_16045 are separated by 549 nucleotides
AO353_16035: AO353_16035 - Lon protease, at 3,543,024 to 3,545,444
_16035
AO353_16040: AO353_16040 - hypothetical protein, at 3,546,096 to 3,546,467
_16040
AO353_16045: AO353_16045 - glucose dehydrogenase, at 3,547,017 to 3,549,428
_16045
Position (kb)
3546
3547 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 3545.277 kb on + strand at 3545.277 kb on + strand at 3545.278 kb on - strand at 3545.278 kb on - strand at 3545.278 kb on - strand at 3545.278 kb on - strand at 3545.278 kb on - strand at 3545.320 kb on + strand at 3545.320 kb on + strand at 3545.320 kb on + strand at 3545.320 kb on + strand at 3545.321 kb on - strand at 3545.321 kb on - strand at 3545.321 kb on - strand at 3545.404 kb on + strand at 3545.405 kb on - strand at 3545.466 kb on - strand at 3545.474 kb on + strand at 3545.474 kb on + strand at 3545.474 kb on + strand at 3545.474 kb on + strand at 3545.474 kb on + strand at 3545.474 kb on + strand at 3545.474 kb on + strand at 3545.474 kb on + strand at 3545.474 kb on + strand at 3545.475 kb on - strand at 3545.475 kb on - strand at 3545.475 kb on - strand at 3545.531 kb on + strand at 3545.531 kb on + strand at 3545.531 kb on + strand at 3545.531 kb on + strand at 3545.531 kb on + strand at 3545.532 kb on - strand at 3545.532 kb on - strand at 3545.532 kb on - strand at 3545.532 kb on - strand at 3545.532 kb on - strand at 3545.538 kb on + strand at 3545.538 kb on + strand at 3545.538 kb on + strand at 3545.538 kb on + strand at 3545.538 kb on + strand at 3545.538 kb on + strand at 3545.539 kb on - strand at 3545.539 kb on - strand at 3545.539 kb on - strand at 3545.539 kb on - strand at 3545.539 kb on - strand at 3545.539 kb on - strand at 3545.539 kb on - strand at 3545.539 kb on - strand at 3545.539 kb on - strand at 3545.539 kb on - strand at 3545.539 kb on - strand at 3545.539 kb on - strand at 3545.539 kb on - strand at 3545.550 kb on + strand at 3545.550 kb on + strand at 3545.550 kb on + strand at 3545.550 kb on + strand at 3545.550 kb on + strand at 3545.550 kb on + strand at 3545.550 kb on + strand at 3545.550 kb on + strand at 3545.550 kb on + strand at 3545.550 kb on + strand at 3545.550 kb on + strand at 3545.551 kb on - strand at 3545.551 kb on - strand at 3545.551 kb on - strand at 3545.551 kb on - strand at 3545.551 kb on - strand at 3545.551 kb on - strand at 3545.551 kb on - strand at 3545.551 kb on - strand at 3545.551 kb on - strand at 3545.551 kb on - strand at 3545.551 kb on - strand at 3545.551 kb on - strand at 3545.555 kb on + strand at 3545.555 kb on + strand at 3545.555 kb on + strand at 3545.556 kb on - strand at 3545.556 kb on - strand at 3545.599 kb on + strand at 3545.599 kb on + strand at 3545.599 kb on + strand at 3545.599 kb on + strand at 3545.599 kb on + strand at 3545.599 kb on + strand at 3545.600 kb on - strand at 3545.600 kb on - strand at 3545.600 kb on - strand at 3545.614 kb on + strand at 3545.614 kb on + strand at 3545.614 kb on + strand at 3545.615 kb on - strand at 3545.615 kb on - strand at 3545.615 kb on - strand at 3545.615 kb on - strand at 3545.615 kb on - strand at 3545.615 kb on - strand at 3545.615 kb on - strand at 3545.686 kb on + strand at 3545.686 kb on + strand at 3545.687 kb on - strand at 3545.687 kb on - strand at 3545.687 kb on - strand at 3545.687 kb on - strand at 3545.687 kb on - strand at 3545.687 kb on - strand at 3545.687 kb on - strand at 3545.687 kb on - strand at 3545.687 kb on - strand at 3545.687 kb on - strand at 3545.687 kb on - strand at 3545.687 kb on - strand at 3545.687 kb on - strand at 3545.687 kb on - strand at 3545.687 kb on - strand at 3545.687 kb on - strand at 3545.687 kb on - strand at 3545.691 kb on - strand at 3545.691 kb on - strand at 3545.691 kb on - strand at 3545.691 kb on - strand at 3545.691 kb on - strand at 3545.691 kb on - strand at 3546.032 kb on + strand at 3546.032 kb on + strand at 3546.044 kb on + strand at 3546.044 kb on + strand at 3546.044 kb on + strand at 3546.045 kb on - strand at 3546.045 kb on - strand at 3546.045 kb on - strand at 3546.045 kb on - strand at 3546.045 kb on - strand at 3546.045 kb on - strand at 3546.045 kb on - strand at 3546.053 kb on + strand at 3546.054 kb on - strand at 3546.054 kb on - strand at 3546.054 kb on - strand at 3546.098 kb on - strand at 3546.361 kb on + strand, within AO353_16040 at 3546.361 kb on + strand, within AO353_16040 at 3546.362 kb on - strand, within AO353_16040 at 3546.418 kb on + strand, within AO353_16040 at 3546.418 kb on + strand, within AO353_16040 at 3546.419 kb on - strand, within AO353_16040 at 3546.484 kb on + strand at 3546.485 kb on - strand at 3546.485 kb on - strand at 3546.532 kb on + strand at 3546.533 kb on - strand at 3546.558 kb on - strand at 3546.558 kb on - strand at 3546.558 kb on - strand at 3546.558 kb on - strand at 3546.570 kb on + strand at 3546.580 kb on + strand at 3546.600 kb on + strand at 3546.619 kb on + strand at 3546.619 kb on + strand at 3546.619 kb on + strand at 3546.619 kb on + strand at 3546.619 kb on + strand at 3546.620 kb on - strand at 3546.660 kb on + strand at 3546.661 kb on - strand at 3546.661 kb on - strand at 3546.667 kb on + strand at 3546.667 kb on + strand at 3546.667 kb on + strand at 3546.667 kb on + strand at 3546.668 kb on - strand at 3546.668 kb on - strand at 3546.668 kb on - strand at 3546.668 kb on - strand at 3546.668 kb on - strand at 3546.668 kb on - strand at 3546.668 kb on - strand at 3546.668 kb on - strand at 3546.717 kb on + strand at 3546.717 kb on + strand at 3546.717 kb on + strand at 3546.717 kb on + strand at 3546.717 kb on + strand at 3546.717 kb on + strand at 3546.717 kb on + strand at 3546.717 kb on + strand at 3546.717 kb on + strand at 3546.717 kb on + strand at 3546.717 kb on + strand at 3546.718 kb on - strand at 3546.718 kb on - strand at 3546.718 kb on - strand at 3546.718 kb on - strand at 3546.718 kb on - strand at 3546.718 kb on - strand at 3546.721 kb on + strand at 3546.721 kb on + strand at 3546.721 kb on + strand at 3546.721 kb on + strand at 3546.721 kb on + strand at 3546.721 kb on + strand at 3546.722 kb on - strand at 3546.722 kb on - strand at 3546.775 kb on + strand at 3546.775 kb on + strand at 3546.776 kb on - strand at 3546.776 kb on - strand at 3546.787 kb on - strand at 3546.933 kb on + strand at 3546.933 kb on + strand at 3546.933 kb on + strand at 3546.933 kb on + strand at 3546.933 kb on + strand at 3546.933 kb on + strand at 3546.934 kb on - strand at 3546.934 kb on - strand at 3546.943 kb on + strand at 3546.943 kb on + strand at 3546.943 kb on + strand at 3546.943 kb on + strand at 3546.943 kb on + strand at 3546.943 kb on + strand at 3546.943 kb on + strand at 3546.943 kb on + strand at 3546.944 kb on - strand at 3546.944 kb on - strand at 3546.944 kb on - strand at 3546.944 kb on - strand at 3546.944 kb on - strand at 3546.944 kb on - strand at 3546.944 kb on - strand at 3546.944 kb on - strand at 3546.944 kb on - strand at 3546.944 kb on - strand at 3546.950 kb on + strand at 3546.950 kb on + strand at 3546.951 kb on - strand at 3546.951 kb on - strand at 3546.951 kb on - strand at 3546.951 kb on - strand at 3546.986 kb on + strand at 3546.986 kb on + strand at 3546.987 kb on - strand at 3547.001 kb on + strand at 3547.001 kb on + strand at 3547.002 kb on - strand at 3547.002 kb on - strand at 3547.019 kb on - strand at 3547.033 kb on + strand at 3547.033 kb on + strand at 3547.033 kb on + strand at 3547.034 kb on - strand at 3547.034 kb on - strand at 3547.034 kb on - strand at 3547.045 kb on + strand at 3547.045 kb on + strand at 3547.045 kb on + strand at 3547.045 kb on + strand at 3547.046 kb on - strand at 3547.046 kb on - strand at 3547.046 kb on - strand at 3547.046 kb on - strand at 3547.086 kb on + strand at 3547.086 kb on + strand at 3547.086 kb on + strand at 3547.086 kb on + strand at 3547.086 kb on + strand at 3547.086 kb on + strand at 3547.087 kb on - strand at 3547.087 kb on - strand at 3547.087 kb on - strand at 3547.087 kb on - strand at 3547.087 kb on - strand at 3547.099 kb on + strand at 3547.099 kb on + strand at 3547.099 kb on + strand at 3547.099 kb on + strand at 3547.099 kb on + strand at 3547.100 kb on - strand at 3547.100 kb on - strand at 3547.100 kb on - strand at 3547.100 kb on - strand at 3547.100 kb on - strand at 3547.123 kb on + strand at 3547.123 kb on + strand at 3547.123 kb on + strand at 3547.123 kb on + strand at 3547.123 kb on + strand at 3547.124 kb on - strand at 3547.124 kb on - strand at 3547.124 kb on - strand at 3547.124 kb on - strand at 3547.195 kb on + strand at 3547.195 kb on + strand at 3547.196 kb on - strand at 3547.196 kb on - strand at 3547.196 kb on - strand at 3547.196 kb on - strand at 3547.207 kb on + strand at 3547.208 kb on - strand at 3547.378 kb on + strand, within AO353_16045 at 3547.378 kb on + strand, within AO353_16045 at 3547.379 kb on - strand, within AO353_16045 at 3547.379 kb on - strand, within AO353_16045 at 3547.444 kb on + strand, within AO353_16045
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 0.12 mg/ml remove 3,545,277 + -0.3 3,545,277 + +0.6 3,545,278 - -0.5 3,545,278 - +1.1 3,545,278 - +0.1 3,545,278 - -1.6 3,545,278 - -0.2 3,545,320 + -1.4 3,545,320 + -1.0 3,545,320 + +0.2 3,545,320 + +0.9 3,545,321 - -0.2 3,545,321 - +0.9 3,545,321 - -0.8 3,545,404 + -0.7 3,545,405 - +0.9 3,545,466 - +1.9 3,545,474 + +0.3 3,545,474 + -1.4 3,545,474 + -1.4 3,545,474 + -0.2 3,545,474 + -0.2 3,545,474 + -0.1 3,545,474 + +2.9 3,545,474 + +0.9 3,545,474 + -0.4 3,545,475 - +1.7 3,545,475 - +0.5 3,545,475 - +1.6 3,545,531 + -1.4 3,545,531 + +0.6 3,545,531 + +0.3 3,545,531 + -0.5 3,545,531 + +1.0 3,545,532 - -0.1 3,545,532 - +0.3 3,545,532 - -1.1 3,545,532 - +0.6 3,545,532 - -1.1 3,545,538 + +0.6 3,545,538 + -0.1 3,545,538 + +0.2 3,545,538 + -0.1 3,545,538 + -1.4 3,545,538 + +1.1 3,545,539 - +0.9 3,545,539 - +1.1 3,545,539 - -0.6 3,545,539 - -1.1 3,545,539 - +0.5 3,545,539 - -0.4 3,545,539 - -0.3 3,545,539 - +0.7 3,545,539 - -2.6 3,545,539 - +1.4 3,545,539 - +0.3 3,545,539 - +0.0 3,545,539 - -0.1 3,545,550 + -0.4 3,545,550 + +0.6 3,545,550 + +0.0 3,545,550 + -0.7 3,545,550 + +1.5 3,545,550 + -0.9 3,545,550 + -0.1 3,545,550 + +1.1 3,545,550 + -0.1 3,545,550 + +1.2 3,545,550 + -0.7 3,545,551 - +1.3 3,545,551 - +0.4 3,545,551 - +2.2 3,545,551 - +1.1 3,545,551 - -0.7 3,545,551 - -0.9 3,545,551 - +0.7 3,545,551 - -0.5 3,545,551 - +0.6 3,545,551 - -1.4 3,545,551 - +0.5 3,545,551 - -1.1 3,545,555 + +3.5 3,545,555 + +1.9 3,545,555 + -0.0 3,545,556 - +1.1 3,545,556 - -0.1 3,545,599 + -1.1 3,545,599 + +0.3 3,545,599 + +0.4 3,545,599 + -0.1 3,545,599 + -1.1 3,545,599 + -0.9 3,545,600 - -0.7 3,545,600 - +0.3 3,545,600 - +0.1 3,545,614 + +0.3 3,545,614 + +1.6 3,545,614 + -0.3 3,545,615 - +0.2 3,545,615 - +1.6 3,545,615 - +0.9 3,545,615 - -0.2 3,545,615 - -1.4 3,545,615 - -0.0 3,545,615 - +0.3 3,545,686 + -0.4 3,545,686 + -0.4 3,545,687 - +0.2 3,545,687 - -0.1 3,545,687 - +0.6 3,545,687 - -0.4 3,545,687 - +0.1 3,545,687 - +0.9 3,545,687 - +0.5 3,545,687 - -0.1 3,545,687 - -2.7 3,545,687 - -0.1 3,545,687 - -1.3 3,545,687 - +1.3 3,545,687 - +0.9 3,545,687 - +0.1 3,545,687 - +2.9 3,545,687 - +0.9 3,545,687 - -1.7 3,545,691 - -1.1 3,545,691 - +2.9 3,545,691 - -1.3 3,545,691 - +0.2 3,545,691 - +0.9 3,545,691 - +0.9 3,546,032 + +0.7 3,546,032 + -3.9 3,546,044 + +0.1 3,546,044 + -2.2 3,546,044 + +0.7 3,546,045 - -0.8 3,546,045 - +0.9 3,546,045 - -0.1 3,546,045 - +0.9 3,546,045 - -1.7 3,546,045 - +0.6 3,546,045 - +1.9 3,546,053 + +0.1 3,546,054 - -0.5 3,546,054 - -0.7 3,546,054 - -0.1 3,546,098 - +0.1 3,546,361 + AO353_16040 0.71 +0.1 3,546,361 + AO353_16040 0.71 -0.4 3,546,362 - AO353_16040 0.72 -0.8 3,546,418 + AO353_16040 0.87 -0.4 3,546,418 + AO353_16040 0.87 -0.7 3,546,419 - AO353_16040 0.87 -0.7 3,546,484 + -2.3 3,546,485 - +0.6 3,546,485 - -0.7 3,546,532 + -0.8 3,546,533 - -0.7 3,546,558 - -0.6 3,546,558 - -1.4 3,546,558 - -0.7 3,546,558 - +0.1 3,546,570 + -1.0 3,546,580 + +0.8 3,546,600 + +0.3 3,546,619 + +0.6 3,546,619 + -1.1 3,546,619 + -0.3 3,546,619 + +0.8 3,546,619 + +1.0 3,546,620 - -2.1 3,546,660 + -0.4 3,546,661 - +0.1 3,546,661 - +0.5 3,546,667 + +0.4 3,546,667 + +0.1 3,546,667 + -0.7 3,546,667 + -0.9 3,546,668 - -0.1 3,546,668 - +2.5 3,546,668 - -0.9 3,546,668 - +0.3 3,546,668 - -1.1 3,546,668 - -0.1 3,546,668 - -0.7 3,546,668 - +0.9 3,546,717 + -1.9 3,546,717 + +0.9 3,546,717 + +0.1 3,546,717 + +0.9 3,546,717 + -0.1 3,546,717 + -1.4 3,546,717 + -0.7 3,546,717 + -0.1 3,546,717 + -0.1 3,546,717 + +1.4 3,546,717 + +0.7 3,546,718 - +0.5 3,546,718 - -0.9 3,546,718 - -0.5 3,546,718 - +0.7 3,546,718 - +0.9 3,546,718 - -0.2 3,546,721 + -1.7 3,546,721 + -0.3 3,546,721 + -1.1 3,546,721 + +0.1 3,546,721 + -0.7 3,546,721 + +0.9 3,546,722 - -1.7 3,546,722 - -1.7 3,546,775 + +0.6 3,546,775 + -0.6 3,546,776 - -2.3 3,546,776 - -1.1 3,546,787 - +0.9 3,546,933 + -1.1 3,546,933 + +0.6 3,546,933 + +0.6 3,546,933 + +0.2 3,546,933 + -0.6 3,546,933 + +0.3 3,546,934 - +0.2 3,546,934 - +0.1 3,546,943 + +0.9 3,546,943 + +0.2 3,546,943 + +0.7 3,546,943 + -0.1 3,546,943 + -0.9 3,546,943 + +0.1 3,546,943 + -0.1 3,546,943 + -1.1 3,546,944 - +0.7 3,546,944 - -1.2 3,546,944 - -0.7 3,546,944 - -0.1 3,546,944 - -1.4 3,546,944 - +1.2 3,546,944 - -2.4 3,546,944 - -0.5 3,546,944 - -0.4 3,546,944 - +0.6 3,546,950 + -0.1 3,546,950 + -1.1 3,546,951 - -1.1 3,546,951 - -0.1 3,546,951 - -2.3 3,546,951 - -0.8 3,546,986 + -0.1 3,546,986 + -0.3 3,546,987 - +0.2 3,547,001 + +0.9 3,547,001 + -0.5 3,547,002 - -0.9 3,547,002 - +0.4 3,547,019 - +0.5 3,547,033 + -0.7 3,547,033 + +0.0 3,547,033 + +0.5 3,547,034 - -0.9 3,547,034 - +0.6 3,547,034 - +0.9 3,547,045 + -1.0 3,547,045 + +1.7 3,547,045 + -0.1 3,547,045 + +0.5 3,547,046 - -0.7 3,547,046 - -0.7 3,547,046 - -1.3 3,547,046 - -0.4 3,547,086 + +0.7 3,547,086 + +0.9 3,547,086 + +0.3 3,547,086 + -0.4 3,547,086 + -0.7 3,547,086 + +0.5 3,547,087 - +0.3 3,547,087 - -0.2 3,547,087 - -0.7 3,547,087 - +0.9 3,547,087 - +0.5 3,547,099 + +0.2 3,547,099 + -0.1 3,547,099 + +0.3 3,547,099 + +1.5 3,547,099 + -2.6 3,547,100 - +0.3 3,547,100 - +0.7 3,547,100 - -2.8 3,547,100 - -0.9 3,547,100 - +0.5 3,547,123 + -0.9 3,547,123 + +0.9 3,547,123 + -2.1 3,547,123 + -0.5 3,547,123 + -1.0 3,547,124 - +0.6 3,547,124 - +1.9 3,547,124 - +0.9 3,547,124 - +0.3 3,547,195 + +0.6 3,547,195 + -0.5 3,547,196 - +0.3 3,547,196 - -2.4 3,547,196 - -0.3 3,547,196 - -1.4 3,547,207 + +2.1 3,547,208 - -0.4 3,547,378 + AO353_16045 0.15 +0.3 3,547,378 + AO353_16045 0.15 -1.4 3,547,379 - AO353_16045 0.15 -2.4 3,547,379 - AO353_16045 0.15 +0.9 3,547,444 + AO353_16045 0.18 -0.8
Or see this region's nucleotide sequence