Experiment: Ceftazidime 0.12 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_11745 and AO353_11750 are separated by 108 nucleotides AO353_11750 and AO353_11755 are separated by 167 nucleotides
AO353_11745: AO353_11745 - chemotaxis protein CheY, at 2,593,654 to 2,594,394
_11745
AO353_11750: AO353_11750 - ATPase, at 2,594,503 to 2,595,816
_11750
AO353_11755: AO353_11755 - ribosomal protein S6 modification protein, at 2,595,984 to 2,596,889
_11755
Position (kb)
2594
2595
2596 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2593.504 kb on + strand at 2593.504 kb on + strand at 2593.504 kb on + strand at 2593.504 kb on + strand at 2593.504 kb on + strand at 2593.504 kb on + strand at 2593.504 kb on + strand at 2593.504 kb on + strand at 2593.505 kb on - strand at 2593.505 kb on - strand at 2593.505 kb on - strand at 2593.505 kb on - strand at 2593.505 kb on - strand at 2593.505 kb on - strand at 2593.505 kb on - strand at 2593.505 kb on - strand at 2593.505 kb on - strand at 2593.506 kb on + strand at 2593.507 kb on - strand at 2593.544 kb on - strand at 2593.544 kb on - strand at 2593.549 kb on + strand at 2593.549 kb on + strand at 2593.549 kb on + strand at 2593.550 kb on - strand at 2593.550 kb on - strand at 2593.550 kb on - strand at 2593.550 kb on - strand at 2593.550 kb on - strand at 2593.550 kb on - strand at 2593.605 kb on + strand at 2593.605 kb on + strand at 2593.605 kb on + strand at 2593.605 kb on + strand at 2593.605 kb on + strand at 2593.606 kb on - strand at 2593.606 kb on - strand at 2593.606 kb on - strand at 2593.606 kb on - strand at 2593.617 kb on + strand at 2593.617 kb on + strand at 2593.617 kb on + strand at 2593.617 kb on + strand at 2593.617 kb on + strand at 2593.624 kb on + strand at 2593.624 kb on + strand at 2593.625 kb on - strand at 2593.625 kb on - strand at 2594.406 kb on + strand at 2594.406 kb on + strand at 2594.406 kb on + strand at 2594.407 kb on - strand at 2594.407 kb on - strand at 2594.487 kb on + strand at 2594.487 kb on + strand at 2594.487 kb on + strand at 2594.487 kb on + strand at 2594.487 kb on + strand at 2594.487 kb on + strand at 2594.487 kb on + strand at 2594.487 kb on + strand at 2594.487 kb on + strand at 2594.487 kb on + strand at 2594.487 kb on + strand at 2594.487 kb on + strand at 2594.487 kb on + strand at 2594.487 kb on + strand at 2594.487 kb on + strand at 2594.488 kb on - strand at 2594.488 kb on - strand at 2594.488 kb on - strand at 2594.488 kb on - strand at 2594.491 kb on + strand at 2594.491 kb on + strand at 2594.491 kb on + strand at 2594.491 kb on + strand at 2594.491 kb on + strand at 2594.491 kb on + strand at 2594.492 kb on - strand at 2594.502 kb on + strand at 2594.599 kb on + strand at 2594.599 kb on + strand at 2594.638 kb on + strand, within AO353_11750 at 2594.638 kb on + strand, within AO353_11750 at 2594.785 kb on + strand, within AO353_11750 at 2595.397 kb on + strand, within AO353_11750 at 2595.568 kb on + strand, within AO353_11750 at 2595.568 kb on + strand, within AO353_11750 at 2596.146 kb on - strand, within AO353_11755 at 2596.354 kb on + strand, within AO353_11755 at 2596.354 kb on + strand, within AO353_11755 at 2596.354 kb on + strand, within AO353_11755 at 2596.354 kb on + strand, within AO353_11755 at 2596.354 kb on + strand, within AO353_11755 at 2596.354 kb on + strand, within AO353_11755 at 2596.354 kb on + strand, within AO353_11755 at 2596.354 kb on + strand, within AO353_11755 at 2596.354 kb on + strand, within AO353_11755 at 2596.354 kb on + strand, within AO353_11755 at 2596.354 kb on + strand, within AO353_11755 at 2596.355 kb on - strand, within AO353_11755 at 2596.355 kb on - strand, within AO353_11755 at 2596.355 kb on - strand, within AO353_11755 at 2596.355 kb on - strand, within AO353_11755 at 2596.355 kb on - strand, within AO353_11755 at 2596.355 kb on - strand, within AO353_11755 at 2596.355 kb on - strand, within AO353_11755 at 2596.757 kb on + strand, within AO353_11755 at 2596.757 kb on + strand, within AO353_11755 at 2596.757 kb on + strand, within AO353_11755 at 2596.757 kb on + strand, within AO353_11755 at 2596.757 kb on + strand, within AO353_11755 at 2596.758 kb on - strand, within AO353_11755 at 2596.775 kb on + strand, within AO353_11755 at 2596.775 kb on + strand, within AO353_11755 at 2596.775 kb on + strand, within AO353_11755 at 2596.775 kb on + strand, within AO353_11755 at 2596.775 kb on + strand, within AO353_11755 at 2596.775 kb on + strand, within AO353_11755 at 2596.776 kb on - strand, within AO353_11755 at 2596.776 kb on - strand, within AO353_11755 at 2596.776 kb on - strand, within AO353_11755 at 2596.777 kb on + strand, within AO353_11755 at 2596.777 kb on + strand, within AO353_11755 at 2596.777 kb on + strand, within AO353_11755 at 2596.777 kb on + strand, within AO353_11755 at 2596.777 kb on + strand, within AO353_11755 at 2596.777 kb on + strand, within AO353_11755 at 2596.777 kb on + strand, within AO353_11755 at 2596.777 kb on + strand, within AO353_11755 at 2596.777 kb on + strand, within AO353_11755 at 2596.777 kb on + strand, within AO353_11755 at 2596.777 kb on + strand, within AO353_11755 at 2596.777 kb on + strand, within AO353_11755 at 2596.777 kb on + strand, within AO353_11755 at 2596.777 kb on + strand, within AO353_11755 at 2596.777 kb on + strand, within AO353_11755 at 2596.777 kb on + strand, within AO353_11755 at 2596.777 kb on + strand, within AO353_11755 at 2596.777 kb on + strand, within AO353_11755 at 2596.778 kb on - strand, within AO353_11755 at 2596.778 kb on - strand, within AO353_11755 at 2596.778 kb on - strand, within AO353_11755 at 2596.778 kb on - strand, within AO353_11755 at 2596.778 kb on - strand, within AO353_11755 at 2596.778 kb on - strand, within AO353_11755 at 2596.778 kb on - strand, within AO353_11755 at 2596.778 kb on - strand, within AO353_11755 at 2596.778 kb on - strand, within AO353_11755 at 2596.778 kb on - strand, within AO353_11755
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 0.12 mg/ml remove 2,593,504 + -1.9 2,593,504 + -1.0 2,593,504 + -1.5 2,593,504 + +0.3 2,593,504 + +0.3 2,593,504 + -1.2 2,593,504 + -0.0 2,593,504 + -0.9 2,593,505 - +1.1 2,593,505 - +1.7 2,593,505 - +0.7 2,593,505 - -0.0 2,593,505 - +2.1 2,593,505 - -1.7 2,593,505 - -0.7 2,593,505 - +1.0 2,593,505 - -0.4 2,593,506 + -1.5 2,593,507 - -0.5 2,593,544 - -0.3 2,593,544 - -0.7 2,593,549 + -0.8 2,593,549 + -0.1 2,593,549 + +1.3 2,593,550 - +0.2 2,593,550 - +0.6 2,593,550 - +3.1 2,593,550 - -0.5 2,593,550 - +0.1 2,593,550 - -0.2 2,593,605 + -0.5 2,593,605 + -2.9 2,593,605 + -0.5 2,593,605 + -0.5 2,593,605 + -0.8 2,593,606 - -0.9 2,593,606 - -1.2 2,593,606 - +0.7 2,593,606 - -0.3 2,593,617 + -1.5 2,593,617 + +0.8 2,593,617 + +0.2 2,593,617 + -0.8 2,593,617 + -0.4 2,593,624 + +0.9 2,593,624 + -0.5 2,593,625 - -0.0 2,593,625 - -0.5 2,594,406 + -2.2 2,594,406 + +1.0 2,594,406 + -0.7 2,594,407 - -1.9 2,594,407 - -1.4 2,594,487 + +1.1 2,594,487 + -0.1 2,594,487 + +0.6 2,594,487 + +0.3 2,594,487 + +1.2 2,594,487 + -0.7 2,594,487 + -0.9 2,594,487 + -1.9 2,594,487 + -1.2 2,594,487 + -0.3 2,594,487 + -0.3 2,594,487 + +0.7 2,594,487 + +0.7 2,594,487 + -0.5 2,594,487 + +1.5 2,594,488 - +0.7 2,594,488 - -0.1 2,594,488 - -2.0 2,594,488 - -0.5 2,594,491 + +1.3 2,594,491 + +0.4 2,594,491 + +1.3 2,594,491 + +1.1 2,594,491 + -0.6 2,594,491 + +1.5 2,594,492 - -2.3 2,594,502 + +0.2 2,594,599 + -1.0 2,594,599 + -1.5 2,594,638 + AO353_11750 0.10 -2.5 2,594,638 + AO353_11750 0.10 -0.3 2,594,785 + AO353_11750 0.21 -1.0 2,595,397 + AO353_11750 0.68 -0.3 2,595,568 + AO353_11750 0.81 +0.3 2,595,568 + AO353_11750 0.81 -1.0 2,596,146 - AO353_11755 0.18 +0.7 2,596,354 + AO353_11755 0.41 -1.7 2,596,354 + AO353_11755 0.41 +1.3 2,596,354 + AO353_11755 0.41 -0.0 2,596,354 + AO353_11755 0.41 -0.4 2,596,354 + AO353_11755 0.41 -0.9 2,596,354 + AO353_11755 0.41 -0.5 2,596,354 + AO353_11755 0.41 +1.2 2,596,354 + AO353_11755 0.41 +1.2 2,596,354 + AO353_11755 0.41 -0.6 2,596,354 + AO353_11755 0.41 +1.0 2,596,354 + AO353_11755 0.41 -0.4 2,596,355 - AO353_11755 0.41 -0.4 2,596,355 - AO353_11755 0.41 +0.2 2,596,355 - AO353_11755 0.41 +1.0 2,596,355 - AO353_11755 0.41 +0.6 2,596,355 - AO353_11755 0.41 +2.5 2,596,355 - AO353_11755 0.41 -0.8 2,596,355 - AO353_11755 0.41 -1.3 2,596,757 + AO353_11755 0.85 +1.1 2,596,757 + AO353_11755 0.85 +0.9 2,596,757 + AO353_11755 0.85 +1.3 2,596,757 + AO353_11755 0.85 -0.2 2,596,757 + AO353_11755 0.85 -1.0 2,596,758 - AO353_11755 0.85 -1.9 2,596,775 + AO353_11755 0.87 +0.3 2,596,775 + AO353_11755 0.87 -0.1 2,596,775 + AO353_11755 0.87 +0.3 2,596,775 + AO353_11755 0.87 -0.0 2,596,775 + AO353_11755 0.87 +0.6 2,596,775 + AO353_11755 0.87 +2.0 2,596,776 - AO353_11755 0.87 -0.3 2,596,776 - AO353_11755 0.87 -1.9 2,596,776 - AO353_11755 0.87 -0.8 2,596,777 + AO353_11755 0.88 +0.4 2,596,777 + AO353_11755 0.88 +1.3 2,596,777 + AO353_11755 0.88 +0.1 2,596,777 + AO353_11755 0.88 -1.3 2,596,777 + AO353_11755 0.88 -0.7 2,596,777 + AO353_11755 0.88 -0.5 2,596,777 + AO353_11755 0.88 -1.0 2,596,777 + AO353_11755 0.88 -0.9 2,596,777 + AO353_11755 0.88 +0.5 2,596,777 + AO353_11755 0.88 +0.8 2,596,777 + AO353_11755 0.88 +1.6 2,596,777 + AO353_11755 0.88 -0.7 2,596,777 + AO353_11755 0.88 -0.4 2,596,777 + AO353_11755 0.88 +0.5 2,596,777 + AO353_11755 0.88 -0.5 2,596,777 + AO353_11755 0.88 -0.3 2,596,777 + AO353_11755 0.88 +1.3 2,596,777 + AO353_11755 0.88 -0.3 2,596,778 - AO353_11755 0.88 -0.7 2,596,778 - AO353_11755 0.88 -0.3 2,596,778 - AO353_11755 0.88 -1.3 2,596,778 - AO353_11755 0.88 -0.3 2,596,778 - AO353_11755 0.88 -1.5 2,596,778 - AO353_11755 0.88 -0.8 2,596,778 - AO353_11755 0.88 +1.5 2,596,778 - AO353_11755 0.88 +0.6 2,596,778 - AO353_11755 0.88 -0.1 2,596,778 - AO353_11755 0.88 +0.5
Or see this region's nucleotide sequence