Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_07685

Experiment: Ceftazidime 0.12 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_07680 and AO353_07685 are separated by 308 nucleotidesAO353_07685 and AO353_07690 are separated by 207 nucleotidesAO353_07690 and AO353_07695 are separated by 21 nucleotides AO353_07680: AO353_07680 - Rieske (2Fe-2S) protein, at 1,692,089 to 1,693,384 _07680 AO353_07685: AO353_07685 - hypothetical protein, at 1,693,693 to 1,694,028 _07685 AO353_07690: AO353_07690 - acetyltransferase, at 1,694,236 to 1,694,802 _07690 AO353_07695: AO353_07695 - electron transfer flavoprotein subunit beta, at 1,694,824 to 1,695,594 _07695 Position (kb) 1693 1694 1695Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1692.735 kb on - strand, within AO353_07680at 1692.832 kb on - strand, within AO353_07680at 1692.913 kb on + strand, within AO353_07680at 1692.913 kb on + strand, within AO353_07680at 1692.914 kb on - strand, within AO353_07680at 1692.914 kb on - strand, within AO353_07680at 1692.956 kb on - strandat 1693.154 kb on + strand, within AO353_07680at 1693.154 kb on + strand, within AO353_07680at 1693.155 kb on - strand, within AO353_07680at 1693.155 kb on - strand, within AO353_07680at 1693.155 kb on - strand, within AO353_07680at 1693.251 kb on - strand, within AO353_07680at 1693.277 kb on + strandat 1693.277 kb on + strandat 1693.277 kb on + strandat 1693.278 kb on - strandat 1693.278 kb on - strandat 1693.278 kb on - strandat 1693.278 kb on - strandat 1693.278 kb on - strandat 1693.278 kb on - strandat 1693.278 kb on - strandat 1693.310 kb on + strandat 1693.310 kb on + strandat 1693.355 kb on + strandat 1693.356 kb on - strandat 1693.356 kb on - strandat 1693.382 kb on + strandat 1693.383 kb on - strandat 1693.383 kb on - strandat 1693.495 kb on + strandat 1693.495 kb on + strandat 1693.495 kb on + strandat 1693.495 kb on + strandat 1693.496 kb on - strandat 1693.496 kb on - strandat 1693.496 kb on - strandat 1693.496 kb on - strandat 1693.505 kb on + strandat 1693.505 kb on + strandat 1693.505 kb on + strandat 1693.505 kb on + strandat 1693.505 kb on + strandat 1693.505 kb on + strandat 1693.505 kb on + strandat 1693.505 kb on + strandat 1693.505 kb on + strandat 1693.506 kb on - strandat 1693.506 kb on - strandat 1693.506 kb on - strandat 1693.506 kb on - strandat 1693.506 kb on - strandat 1693.506 kb on - strandat 1693.506 kb on - strandat 1693.506 kb on - strandat 1693.506 kb on - strandat 1693.506 kb on - strandat 1693.506 kb on - strandat 1693.506 kb on - strandat 1693.506 kb on - strandat 1693.506 kb on - strandat 1693.506 kb on - strandat 1693.522 kb on + strandat 1693.522 kb on + strandat 1693.522 kb on + strandat 1693.522 kb on + strandat 1693.522 kb on + strandat 1693.522 kb on + strandat 1693.523 kb on - strandat 1693.523 kb on - strandat 1693.540 kb on - strandat 1693.540 kb on - strandat 1693.548 kb on - strandat 1693.554 kb on + strandat 1693.562 kb on - strandat 1693.562 kb on - strandat 1693.576 kb on + strandat 1693.576 kb on + strandat 1693.576 kb on + strandat 1693.577 kb on - strandat 1693.577 kb on - strandat 1693.577 kb on - strandat 1693.578 kb on + strandat 1693.579 kb on - strandat 1693.592 kb on + strandat 1693.592 kb on + strandat 1693.592 kb on + strandat 1693.635 kb on + strandat 1693.635 kb on + strandat 1693.635 kb on + strandat 1693.686 kb on - strandat 1693.699 kb on + strandat 1693.700 kb on - strandat 1693.700 kb on - strandat 1693.733 kb on - strand, within AO353_07685at 1693.846 kb on + strand, within AO353_07685at 1693.846 kb on + strand, within AO353_07685at 1693.846 kb on + strand, within AO353_07685at 1693.847 kb on - strand, within AO353_07685at 1693.876 kb on + strand, within AO353_07685at 1693.908 kb on - strand, within AO353_07685at 1693.967 kb on + strand, within AO353_07685at 1693.968 kb on - strand, within AO353_07685at 1693.968 kb on - strand, within AO353_07685at 1693.968 kb on - strand, within AO353_07685at 1693.988 kb on + strand, within AO353_07685at 1694.031 kb on + strandat 1694.032 kb on - strandat 1694.032 kb on - strandat 1694.096 kb on - strandat 1694.131 kb on - strandat 1694.150 kb on - strandat 1694.180 kb on + strandat 1694.184 kb on + strandat 1694.184 kb on + strandat 1694.184 kb on + strandat 1694.184 kb on + strandat 1694.184 kb on + strandat 1694.184 kb on + strandat 1694.184 kb on + strandat 1694.185 kb on - strandat 1694.185 kb on - strandat 1694.203 kb on + strandat 1694.204 kb on - strandat 1694.204 kb on - strandat 1694.238 kb on - strandat 1694.246 kb on + strandat 1694.246 kb on + strandat 1694.247 kb on - strandat 1694.247 kb on - strandat 1694.247 kb on - strandat 1694.247 kb on - strandat 1694.247 kb on - strandat 1694.255 kb on + strandat 1694.255 kb on + strandat 1694.255 kb on + strandat 1694.255 kb on + strandat 1694.255 kb on + strandat 1694.255 kb on + strandat 1694.255 kb on + strandat 1694.256 kb on - strandat 1694.256 kb on - strandat 1694.256 kb on - strandat 1694.304 kb on + strand, within AO353_07690at 1694.305 kb on - strand, within AO353_07690at 1694.305 kb on - strand, within AO353_07690at 1694.333 kb on + strand, within AO353_07690at 1694.333 kb on + strand, within AO353_07690at 1694.334 kb on - strand, within AO353_07690at 1694.334 kb on - strand, within AO353_07690at 1694.364 kb on - strand, within AO353_07690at 1694.411 kb on + strand, within AO353_07690at 1694.417 kb on + strand, within AO353_07690at 1694.417 kb on + strand, within AO353_07690at 1694.417 kb on + strand, within AO353_07690at 1694.417 kb on + strand, within AO353_07690at 1694.418 kb on - strand, within AO353_07690at 1694.479 kb on + strand, within AO353_07690at 1694.479 kb on + strand, within AO353_07690at 1694.480 kb on - strand, within AO353_07690at 1694.480 kb on - strand, within AO353_07690at 1694.480 kb on - strand, within AO353_07690at 1694.483 kb on + strand, within AO353_07690at 1694.483 kb on + strand, within AO353_07690at 1694.483 kb on + strand, within AO353_07690at 1694.483 kb on + strand, within AO353_07690at 1694.483 kb on + strand, within AO353_07690at 1694.483 kb on + strand, within AO353_07690at 1694.484 kb on - strand, within AO353_07690at 1694.484 kb on - strand, within AO353_07690at 1694.484 kb on - strand, within AO353_07690at 1694.484 kb on - strand, within AO353_07690at 1694.484 kb on - strand, within AO353_07690at 1694.484 kb on - strand, within AO353_07690at 1694.484 kb on - strand, within AO353_07690at 1694.484 kb on - strand, within AO353_07690at 1694.484 kb on - strand, within AO353_07690at 1694.514 kb on - strand, within AO353_07690at 1694.570 kb on + strand, within AO353_07690at 1694.570 kb on + strand, within AO353_07690at 1694.570 kb on + strand, within AO353_07690at 1694.570 kb on + strand, within AO353_07690at 1694.570 kb on + strand, within AO353_07690at 1694.570 kb on + strand, within AO353_07690at 1694.570 kb on + strand, within AO353_07690at 1694.570 kb on + strand, within AO353_07690at 1694.570 kb on + strand, within AO353_07690at 1694.570 kb on + strand, within AO353_07690at 1694.570 kb on + strand, within AO353_07690at 1694.570 kb on + strand, within AO353_07690at 1694.570 kb on + strand, within AO353_07690at 1694.570 kb on + strand, within AO353_07690at 1694.570 kb on + strand, within AO353_07690at 1694.570 kb on + strand, within AO353_07690at 1694.570 kb on + strand, within AO353_07690at 1694.570 kb on + strand, within AO353_07690at 1694.570 kb on + strand, within AO353_07690at 1694.570 kb on + strand, within AO353_07690at 1694.570 kb on + strand, within AO353_07690at 1694.570 kb on + strand, within AO353_07690at 1694.570 kb on + strand, within AO353_07690at 1694.571 kb on - strand, within AO353_07690at 1694.571 kb on - strand, within AO353_07690at 1694.571 kb on - strand, within AO353_07690at 1694.571 kb on - strand, within AO353_07690at 1694.571 kb on - strand, within AO353_07690at 1694.571 kb on - strand, within AO353_07690at 1694.571 kb on - strand, within AO353_07690at 1694.571 kb on - strand, within AO353_07690at 1694.571 kb on - strand, within AO353_07690at 1694.571 kb on - strand, within AO353_07690at 1694.571 kb on - strand, within AO353_07690at 1694.571 kb on - strand, within AO353_07690at 1694.571 kb on - strand, within AO353_07690at 1694.571 kb on - strand, within AO353_07690at 1694.571 kb on - strand, within AO353_07690at 1694.571 kb on - strand, within AO353_07690at 1694.571 kb on - strand, within AO353_07690at 1694.571 kb on - strand, within AO353_07690at 1694.571 kb on - strand, within AO353_07690at 1694.571 kb on - strand, within AO353_07690at 1694.571 kb on - strand, within AO353_07690at 1694.627 kb on + strand, within AO353_07690at 1694.628 kb on - strand, within AO353_07690at 1694.654 kb on + strand, within AO353_07690at 1694.714 kb on + strand, within AO353_07690at 1694.714 kb on + strand, within AO353_07690at 1694.714 kb on + strand, within AO353_07690at 1694.715 kb on - strand, within AO353_07690at 1694.715 kb on - strand, within AO353_07690at 1694.715 kb on - strand, within AO353_07690at 1694.715 kb on - strand, within AO353_07690at 1694.804 kb on + strandat 1694.805 kb on - strandat 1694.805 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ceftazidime 0.12 mg/ml
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1,692,735 - AO353_07680 0.50 -0.8
1,692,832 - AO353_07680 0.57 +0.6
1,692,913 + AO353_07680 0.64 +0.7
1,692,913 + AO353_07680 0.64 -0.0
1,692,914 - AO353_07680 0.64 -0.4
1,692,914 - AO353_07680 0.64 +0.3
1,692,956 - +1.2
1,693,154 + AO353_07680 0.82 -0.4
1,693,154 + AO353_07680 0.82 -0.4
1,693,155 - AO353_07680 0.82 -1.4
1,693,155 - AO353_07680 0.82 +1.0
1,693,155 - AO353_07680 0.82 -0.9
1,693,251 - AO353_07680 0.90 +0.9
1,693,277 + -0.3
1,693,277 + +0.8
1,693,277 + -1.2
1,693,278 - -1.4
1,693,278 - -1.6
1,693,278 - +0.6
1,693,278 - -0.8
1,693,278 - -1.0
1,693,278 - -0.0
1,693,278 - +1.2
1,693,310 + +0.2
1,693,310 + -0.1
1,693,355 + -0.6
1,693,356 - +0.8
1,693,356 - +0.8
1,693,382 + +1.2
1,693,383 - -0.2
1,693,383 - +0.7
1,693,495 + -0.8
1,693,495 + -0.4
1,693,495 + -0.5
1,693,495 + +0.5
1,693,496 - -1.4
1,693,496 - +0.4
1,693,496 - -2.3
1,693,496 - +1.6
1,693,505 + +0.4
1,693,505 + -0.0
1,693,505 + +0.3
1,693,505 + +1.4
1,693,505 + +0.2
1,693,505 + +2.2
1,693,505 + +0.1
1,693,505 + +1.2
1,693,505 + -0.4
1,693,506 - -0.0
1,693,506 - -0.6
1,693,506 - -0.1
1,693,506 - -1.8
1,693,506 - +0.7
1,693,506 - -0.4
1,693,506 - +1.2
1,693,506 - -1.4
1,693,506 - +0.5
1,693,506 - -0.1
1,693,506 - -1.0
1,693,506 - +1.0
1,693,506 - +1.1
1,693,506 - -0.6
1,693,506 - +3.3
1,693,522 + -0.5
1,693,522 + -0.5
1,693,522 + -0.3
1,693,522 + +0.2
1,693,522 + +1.2
1,693,522 + +0.1
1,693,523 - -0.2
1,693,523 - -1.2
1,693,540 - -0.3
1,693,540 - +0.9
1,693,548 - +0.1
1,693,554 + -0.7
1,693,562 - +0.9
1,693,562 - +0.2
1,693,576 + +0.6
1,693,576 + +0.8
1,693,576 + -0.4
1,693,577 - +1.9
1,693,577 - -0.2
1,693,577 - +1.3
1,693,578 + -1.0
1,693,579 - +0.4
1,693,592 + +0.3
1,693,592 + -0.6
1,693,592 + -0.7
1,693,635 + +0.7
1,693,635 + +2.2
1,693,635 + -0.2
1,693,686 - -1.2
1,693,699 + -0.4
1,693,700 - +0.3
1,693,700 - +1.0
1,693,733 - AO353_07685 0.12 -0.8
1,693,846 + AO353_07685 0.46 -1.8
1,693,846 + AO353_07685 0.46 -0.4
1,693,846 + AO353_07685 0.46 +0.3
1,693,847 - AO353_07685 0.46 -0.3
1,693,876 + AO353_07685 0.54 -2.6
1,693,908 - AO353_07685 0.64 -1.1
1,693,967 + AO353_07685 0.82 -2.6
1,693,968 - AO353_07685 0.82 -0.3
1,693,968 - AO353_07685 0.82 -0.3
1,693,968 - AO353_07685 0.82 -0.4
1,693,988 + AO353_07685 0.88 +0.7
1,694,031 + -0.6
1,694,032 - -0.2
1,694,032 - +1.2
1,694,096 - +2.2
1,694,131 - +0.1
1,694,150 - -0.8
1,694,180 + +0.4
1,694,184 + +1.3
1,694,184 + -0.4
1,694,184 + +1.4
1,694,184 + +1.4
1,694,184 + -0.2
1,694,184 + +0.5
1,694,184 + +0.6
1,694,185 - +0.2
1,694,185 - +0.2
1,694,203 + +0.8
1,694,204 - -1.7
1,694,204 - -1.3
1,694,238 - -0.8
1,694,246 + +0.9
1,694,246 + +0.8
1,694,247 - +0.0
1,694,247 - +0.6
1,694,247 - -1.8
1,694,247 - +0.9
1,694,247 - +0.1
1,694,255 + -0.1
1,694,255 + +0.0
1,694,255 + +1.2
1,694,255 + -1.4
1,694,255 + -1.2
1,694,255 + -0.8
1,694,255 + -0.7
1,694,256 - +0.1
1,694,256 - -1.0
1,694,256 - +0.3
1,694,304 + AO353_07690 0.12 -0.1
1,694,305 - AO353_07690 0.12 +1.6
1,694,305 - AO353_07690 0.12 -0.3
1,694,333 + AO353_07690 0.17 +1.4
1,694,333 + AO353_07690 0.17 -0.1
1,694,334 - AO353_07690 0.17 -0.4
1,694,334 - AO353_07690 0.17 -1.4
1,694,364 - AO353_07690 0.23 +1.9
1,694,411 + AO353_07690 0.31 +0.1
1,694,417 + AO353_07690 0.32 +1.2
1,694,417 + AO353_07690 0.32 -0.4
1,694,417 + AO353_07690 0.32 +0.4
1,694,417 + AO353_07690 0.32 +0.6
1,694,418 - AO353_07690 0.32 +0.6
1,694,479 + AO353_07690 0.43 -0.1
1,694,479 + AO353_07690 0.43 +0.7
1,694,480 - AO353_07690 0.43 +1.0
1,694,480 - AO353_07690 0.43 -0.3
1,694,480 - AO353_07690 0.43 +1.7
1,694,483 + AO353_07690 0.44 +1.2
1,694,483 + AO353_07690 0.44 +1.4
1,694,483 + AO353_07690 0.44 -0.1
1,694,483 + AO353_07690 0.44 +0.1
1,694,483 + AO353_07690 0.44 -0.0
1,694,483 + AO353_07690 0.44 -1.0
1,694,484 - AO353_07690 0.44 +0.9
1,694,484 - AO353_07690 0.44 +0.2
1,694,484 - AO353_07690 0.44 -0.6
1,694,484 - AO353_07690 0.44 +0.6
1,694,484 - AO353_07690 0.44 -0.6
1,694,484 - AO353_07690 0.44 +3.8
1,694,484 - AO353_07690 0.44 +0.4
1,694,484 - AO353_07690 0.44 -2.1
1,694,484 - AO353_07690 0.44 -0.6
1,694,514 - AO353_07690 0.49 +0.4
1,694,570 + AO353_07690 0.59 +1.2
1,694,570 + AO353_07690 0.59 -0.1
1,694,570 + AO353_07690 0.59 -0.1
1,694,570 + AO353_07690 0.59 -1.3
1,694,570 + AO353_07690 0.59 -0.4
1,694,570 + AO353_07690 0.59 -1.0
1,694,570 + AO353_07690 0.59 -1.4
1,694,570 + AO353_07690 0.59 +0.4
1,694,570 + AO353_07690 0.59 -0.1
1,694,570 + AO353_07690 0.59 +0.0
1,694,570 + AO353_07690 0.59 -1.0
1,694,570 + AO353_07690 0.59 -0.4
1,694,570 + AO353_07690 0.59 -1.4
1,694,570 + AO353_07690 0.59 +0.0
1,694,570 + AO353_07690 0.59 -0.8
1,694,570 + AO353_07690 0.59 +0.2
1,694,570 + AO353_07690 0.59 +0.9
1,694,570 + AO353_07690 0.59 -1.3
1,694,570 + AO353_07690 0.59 -1.2
1,694,570 + AO353_07690 0.59 +0.7
1,694,570 + AO353_07690 0.59 -1.1
1,694,570 + AO353_07690 0.59 -2.0
1,694,570 + AO353_07690 0.59 -0.2
1,694,571 - AO353_07690 0.59 -2.0
1,694,571 - AO353_07690 0.59 +0.6
1,694,571 - AO353_07690 0.59 -0.3
1,694,571 - AO353_07690 0.59 +0.2
1,694,571 - AO353_07690 0.59 +0.7
1,694,571 - AO353_07690 0.59 -0.8
1,694,571 - AO353_07690 0.59 -1.1
1,694,571 - AO353_07690 0.59 +2.0
1,694,571 - AO353_07690 0.59 +0.6
1,694,571 - AO353_07690 0.59 +0.6
1,694,571 - AO353_07690 0.59 +0.3
1,694,571 - AO353_07690 0.59 -0.4
1,694,571 - AO353_07690 0.59 +0.9
1,694,571 - AO353_07690 0.59 +0.2
1,694,571 - AO353_07690 0.59 +0.6
1,694,571 - AO353_07690 0.59 +1.0
1,694,571 - AO353_07690 0.59 +1.2
1,694,571 - AO353_07690 0.59 -3.1
1,694,571 - AO353_07690 0.59 -0.7
1,694,571 - AO353_07690 0.59 +0.5
1,694,571 - AO353_07690 0.59 -0.1
1,694,627 + AO353_07690 0.69 +0.1
1,694,628 - AO353_07690 0.69 +2.8
1,694,654 + AO353_07690 0.74 -1.1
1,694,714 + AO353_07690 0.84 +0.6
1,694,714 + AO353_07690 0.84 -1.4
1,694,714 + AO353_07690 0.84 -0.2
1,694,715 - AO353_07690 0.84 +0.4
1,694,715 - AO353_07690 0.84 -1.4
1,694,715 - AO353_07690 0.84 +0.2
1,694,715 - AO353_07690 0.84 -0.5
1,694,804 + +1.5
1,694,805 - +1.0
1,694,805 - -2.3

Or see this region's nucleotide sequence