Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_07370

Experiment: Ceftazidime 0.12 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_07360 and AO353_07365 are separated by 74 nucleotidesAO353_07365 and AO353_07370 are separated by 36 nucleotidesAO353_07370 and AO353_07375 are separated by 199 nucleotidesAO353_07375 and AO353_07380 are separated by 489 nucleotides AO353_07360: AO353_07360 - dihydroneopterin aldolase, at 1,617,496 to 1,617,849 _07360 AO353_07365: AO353_07365 - glycerol-3-phosphate acyltransferase, at 1,617,924 to 1,618,493 _07365 AO353_07370: AO353_07370 - tRNA threonylcarbamoyl adenosine modification protein TsaD, at 1,618,530 to 1,619,555 _07370 AO353_07375: AO353_07375 - 30S ribosomal protein S21, at 1,619,755 to 1,619,970 _07375 AO353_07380: AO353_07380 - DNA primase, at 1,620,460 to 1,622,421 _07380 Position (kb) 1618 1619 1620Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1617.916 kb on + strandat 1617.916 kb on + strandat 1617.916 kb on + strandat 1617.916 kb on + strandat 1617.916 kb on + strandat 1617.916 kb on + strandat 1617.917 kb on - strandat 1617.917 kb on - strandat 1617.917 kb on - strandat 1617.917 kb on - strandat 1617.917 kb on - strandat 1617.917 kb on - strandat 1617.917 kb on - strandat 1617.917 kb on - strandat 1617.920 kb on + strandat 1617.920 kb on + strandat 1617.920 kb on + strandat 1617.920 kb on + strandat 1617.920 kb on + strandat 1617.920 kb on + strandat 1617.920 kb on + strandat 1617.921 kb on - strandat 1617.921 kb on - strandat 1617.921 kb on - strandat 1617.921 kb on - strandat 1617.921 kb on - strandat 1617.921 kb on - strandat 1617.921 kb on - strandat 1617.951 kb on + strandat 1617.951 kb on + strandat 1618.054 kb on + strand, within AO353_07365at 1618.055 kb on - strand, within AO353_07365at 1618.179 kb on + strand, within AO353_07365at 1618.179 kb on + strand, within AO353_07365at 1618.180 kb on - strand, within AO353_07365at 1618.180 kb on - strand, within AO353_07365at 1618.201 kb on - strand, within AO353_07365at 1618.209 kb on + strand, within AO353_07365at 1618.209 kb on + strand, within AO353_07365at 1618.210 kb on - strand, within AO353_07365at 1618.210 kb on - strand, within AO353_07365at 1618.210 kb on - strand, within AO353_07365at 1618.210 kb on - strand, within AO353_07365at 1618.210 kb on - strand, within AO353_07365at 1618.270 kb on - strand, within AO353_07365at 1618.306 kb on + strand, within AO353_07365at 1618.317 kb on + strand, within AO353_07365at 1618.317 kb on + strand, within AO353_07365at 1618.317 kb on + strand, within AO353_07365at 1618.317 kb on + strand, within AO353_07365at 1618.317 kb on + strand, within AO353_07365at 1618.317 kb on + strand, within AO353_07365at 1618.318 kb on - strand, within AO353_07365at 1618.318 kb on - strand, within AO353_07365at 1618.318 kb on - strand, within AO353_07365at 1618.318 kb on - strand, within AO353_07365at 1618.318 kb on - strand, within AO353_07365at 1618.318 kb on - strand, within AO353_07365at 1618.456 kb on + strandat 1618.456 kb on + strandat 1618.457 kb on - strandat 1618.457 kb on - strandat 1618.457 kb on - strandat 1618.457 kb on - strandat 1618.457 kb on - strandat 1618.457 kb on - strandat 1618.491 kb on + strandat 1618.491 kb on + strandat 1618.491 kb on + strandat 1618.495 kb on + strandat 1618.495 kb on + strandat 1618.495 kb on + strandat 1618.495 kb on + strandat 1618.495 kb on + strandat 1618.495 kb on + strandat 1618.496 kb on - strandat 1618.508 kb on + strandat 1618.531 kb on + strandat 1618.531 kb on + strandat 1618.531 kb on + strandat 1618.532 kb on - strandat 1618.532 kb on - strandat 1618.532 kb on - strandat 1619.599 kb on - strandat 1619.599 kb on - strandat 1620.022 kb on + strandat 1620.022 kb on + strandat 1620.022 kb on + strandat 1620.226 kb on + strandat 1620.226 kb on + strandat 1620.226 kb on + strandat 1620.226 kb on + strandat 1620.226 kb on + strandat 1620.226 kb on + strandat 1620.226 kb on + strandat 1620.226 kb on + strandat 1620.233 kb on + strandat 1620.304 kb on + strandat 1620.304 kb on + strandat 1620.328 kb on + strandat 1620.328 kb on + strandat 1620.328 kb on + strandat 1620.328 kb on + strandat 1620.358 kb on + strandat 1620.358 kb on + strandat 1620.394 kb on + strandat 1620.394 kb on + strandat 1620.394 kb on + strandat 1620.394 kb on + strandat 1620.394 kb on + strandat 1620.394 kb on + strandat 1620.394 kb on + strandat 1620.394 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ceftazidime 0.12 mg/ml
remove
1,617,916 + -0.4
1,617,916 + +1.1
1,617,916 + -0.9
1,617,916 + -2.5
1,617,916 + -0.9
1,617,916 + -1.9
1,617,917 - +0.1
1,617,917 - +1.3
1,617,917 - -0.5
1,617,917 - +0.2
1,617,917 - +0.1
1,617,917 - +0.1
1,617,917 - -1.2
1,617,917 - -3.2
1,617,920 + -2.6
1,617,920 + +0.1
1,617,920 + -1.9
1,617,920 + +0.7
1,617,920 + -0.9
1,617,920 + -1.3
1,617,920 + -0.5
1,617,921 - +0.4
1,617,921 - -1.7
1,617,921 - +0.8
1,617,921 - -0.1
1,617,921 - +0.9
1,617,921 - +0.4
1,617,921 - -1.3
1,617,951 + +0.4
1,617,951 + -0.5
1,618,054 + AO353_07365 0.23 -1.0
1,618,055 - AO353_07365 0.23 +0.0
1,618,179 + AO353_07365 0.45 -0.1
1,618,179 + AO353_07365 0.45 +0.8
1,618,180 - AO353_07365 0.45 +2.3
1,618,180 - AO353_07365 0.45 -0.3
1,618,201 - AO353_07365 0.49 +0.2
1,618,209 + AO353_07365 0.50 -1.4
1,618,209 + AO353_07365 0.50 +0.3
1,618,210 - AO353_07365 0.50 -1.0
1,618,210 - AO353_07365 0.50 +0.6
1,618,210 - AO353_07365 0.50 +1.6
1,618,210 - AO353_07365 0.50 -1.1
1,618,210 - AO353_07365 0.50 +0.6
1,618,270 - AO353_07365 0.61 +0.9
1,618,306 + AO353_07365 0.67 -0.3
1,618,317 + AO353_07365 0.69 +0.0
1,618,317 + AO353_07365 0.69 +0.4
1,618,317 + AO353_07365 0.69 +1.9
1,618,317 + AO353_07365 0.69 -3.0
1,618,317 + AO353_07365 0.69 +0.6
1,618,317 + AO353_07365 0.69 +1.3
1,618,318 - AO353_07365 0.69 +0.1
1,618,318 - AO353_07365 0.69 -0.5
1,618,318 - AO353_07365 0.69 +1.5
1,618,318 - AO353_07365 0.69 -1.7
1,618,318 - AO353_07365 0.69 -1.2
1,618,318 - AO353_07365 0.69 +1.1
1,618,456 + +0.3
1,618,456 + +1.3
1,618,457 - +0.0
1,618,457 - +2.1
1,618,457 - -0.9
1,618,457 - +0.1
1,618,457 - +1.1
1,618,457 - +0.4
1,618,491 + -0.3
1,618,491 + +1.1
1,618,491 + +0.6
1,618,495 + +0.4
1,618,495 + +0.4
1,618,495 + -1.5
1,618,495 + +0.3
1,618,495 + -1.9
1,618,495 + -1.5
1,618,496 - +0.5
1,618,508 + -1.3
1,618,531 + -0.5
1,618,531 + +0.6
1,618,531 + +0.3
1,618,532 - -1.2
1,618,532 - +0.7
1,618,532 - +0.5
1,619,599 - +0.1
1,619,599 - -1.2
1,620,022 + -0.9
1,620,022 + +0.9
1,620,022 + -0.5
1,620,226 + -0.2
1,620,226 + +0.8
1,620,226 + -0.5
1,620,226 + -0.3
1,620,226 + -1.5
1,620,226 + -0.8
1,620,226 + +0.5
1,620,226 + +1.0
1,620,233 + +0.3
1,620,304 + -2.1
1,620,304 + +0.9
1,620,328 + +1.1
1,620,328 + -1.7
1,620,328 + +0.5
1,620,328 + -0.3
1,620,358 + +1.7
1,620,358 + -0.9
1,620,394 + -2.1
1,620,394 + -0.3
1,620,394 + -0.1
1,620,394 + +1.0
1,620,394 + +0.0
1,620,394 + -0.1
1,620,394 + +0.1
1,620,394 + -0.3

Or see this region's nucleotide sequence