Experiment: Ceftazidime 0.12 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_04400 and AO353_04405 are separated by 71 nucleotides AO353_04405 and AO353_04410 are separated by 102 nucleotides
AO353_04400: AO353_04400 - transporter, at 947,431 to 948,696
_04400
AO353_04405: AO353_04405 - MFS transporter, at 948,768 to 950,084
_04405
AO353_04410: AO353_04410 - phosphoribosylglycinamide formyltransferase, at 950,187 to 951,368
_04410
Position (kb) 948
949
950
951 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 947.816 kb on + strand, within AO353_04400 at 947.817 kb on - strand, within AO353_04400 at 947.822 kb on - strand, within AO353_04400 at 948.156 kb on + strand, within AO353_04400 at 948.232 kb on + strand, within AO353_04400 at 948.232 kb on + strand, within AO353_04400 at 948.232 kb on + strand, within AO353_04400 at 948.232 kb on + strand, within AO353_04400 at 948.232 kb on + strand, within AO353_04400 at 948.232 kb on + strand, within AO353_04400 at 948.232 kb on + strand, within AO353_04400 at 948.233 kb on - strand, within AO353_04400 at 948.233 kb on - strand, within AO353_04400 at 948.233 kb on - strand, within AO353_04400 at 948.233 kb on - strand, within AO353_04400 at 948.233 kb on - strand, within AO353_04400 at 948.233 kb on - strand, within AO353_04400 at 948.233 kb on - strand, within AO353_04400 at 948.233 kb on - strand, within AO353_04400 at 948.233 kb on - strand, within AO353_04400 at 948.233 kb on - strand, within AO353_04400 at 948.233 kb on - strand, within AO353_04400 at 948.319 kb on + strand, within AO353_04400 at 948.319 kb on + strand, within AO353_04400 at 948.319 kb on + strand, within AO353_04400 at 948.320 kb on - strand, within AO353_04400 at 948.329 kb on + strand, within AO353_04400 at 948.329 kb on + strand, within AO353_04400 at 948.329 kb on + strand, within AO353_04400 at 948.330 kb on - strand, within AO353_04400 at 948.330 kb on - strand, within AO353_04400 at 948.330 kb on - strand, within AO353_04400 at 948.330 kb on - strand, within AO353_04400 at 948.330 kb on - strand, within AO353_04400 at 948.330 kb on - strand, within AO353_04400 at 948.647 kb on + strand at 948.648 kb on - strand at 948.695 kb on - strand at 948.695 kb on - strand at 948.695 kb on - strand at 948.724 kb on - strand at 948.726 kb on + strand at 948.726 kb on + strand at 948.726 kb on + strand at 948.726 kb on + strand at 948.727 kb on - strand at 948.727 kb on - strand at 948.727 kb on - strand at 948.727 kb on - strand at 948.727 kb on - strand at 948.727 kb on - strand at 948.773 kb on + strand at 948.773 kb on + strand at 948.774 kb on - strand at 948.786 kb on + strand at 948.786 kb on + strand at 948.786 kb on + strand at 948.786 kb on + strand at 948.787 kb on - strand at 948.787 kb on - strand at 948.787 kb on - strand at 948.870 kb on + strand at 948.871 kb on - strand at 948.871 kb on - strand at 948.871 kb on - strand at 948.879 kb on + strand at 948.879 kb on + strand at 948.879 kb on + strand at 948.879 kb on + strand at 948.879 kb on + strand at 948.879 kb on + strand at 948.879 kb on + strand at 948.879 kb on + strand at 948.879 kb on + strand at 948.880 kb on - strand at 948.880 kb on - strand at 948.880 kb on - strand at 948.880 kb on - strand at 948.880 kb on - strand at 948.880 kb on - strand at 948.880 kb on - strand at 948.880 kb on - strand at 948.880 kb on - strand at 948.880 kb on - strand at 948.885 kb on + strand at 949.000 kb on + strand, within AO353_04405 at 949.001 kb on - strand, within AO353_04405 at 949.001 kb on - strand, within AO353_04405 at 949.114 kb on - strand, within AO353_04405 at 949.153 kb on + strand, within AO353_04405 at 949.153 kb on + strand, within AO353_04405 at 949.154 kb on - strand, within AO353_04405 at 949.154 kb on - strand, within AO353_04405 at 949.278 kb on - strand, within AO353_04405 at 949.404 kb on + strand, within AO353_04405 at 949.404 kb on + strand, within AO353_04405 at 949.404 kb on + strand, within AO353_04405 at 949.404 kb on + strand, within AO353_04405 at 949.405 kb on - strand, within AO353_04405 at 949.501 kb on - strand, within AO353_04405 at 949.558 kb on - strand, within AO353_04405 at 949.558 kb on - strand, within AO353_04405 at 949.558 kb on - strand, within AO353_04405 at 949.584 kb on + strand, within AO353_04405 at 949.584 kb on + strand, within AO353_04405 at 949.584 kb on + strand, within AO353_04405 at 949.585 kb on - strand, within AO353_04405 at 949.585 kb on - strand, within AO353_04405 at 949.585 kb on - strand, within AO353_04405 at 949.606 kb on - strand, within AO353_04405 at 949.606 kb on - strand, within AO353_04405 at 949.890 kb on - strand, within AO353_04405 at 949.908 kb on + strand, within AO353_04405 at 949.908 kb on + strand, within AO353_04405 at 949.908 kb on + strand, within AO353_04405 at 949.908 kb on + strand, within AO353_04405 at 949.908 kb on + strand, within AO353_04405 at 949.908 kb on + strand, within AO353_04405 at 949.908 kb on + strand, within AO353_04405 at 949.909 kb on - strand, within AO353_04405 at 949.998 kb on + strand at 949.998 kb on + strand at 949.998 kb on + strand at 949.999 kb on - strand at 949.999 kb on - strand at 949.999 kb on - strand at 950.060 kb on + strand at 950.060 kb on + strand at 950.060 kb on + strand at 950.061 kb on - strand at 950.061 kb on - strand at 950.085 kb on + strand at 950.085 kb on + strand at 950.086 kb on - strand at 950.086 kb on - strand at 950.086 kb on - strand at 950.086 kb on - strand at 950.116 kb on - strand at 950.116 kb on - strand at 950.121 kb on + strand at 950.121 kb on + strand at 950.121 kb on + strand at 950.121 kb on + strand at 950.121 kb on + strand at 950.121 kb on + strand at 950.121 kb on + strand at 950.121 kb on + strand at 950.121 kb on + strand at 950.121 kb on + strand at 950.121 kb on + strand at 950.121 kb on + strand at 950.122 kb on - strand at 950.122 kb on - strand at 950.122 kb on - strand at 950.122 kb on - strand at 950.122 kb on - strand at 950.160 kb on + strand at 950.161 kb on - strand at 950.188 kb on + strand at 950.188 kb on + strand at 950.188 kb on + strand at 950.188 kb on + strand at 950.188 kb on + strand at 950.189 kb on - strand at 950.196 kb on + strand at 950.196 kb on + strand at 950.196 kb on + strand at 950.196 kb on + strand at 950.196 kb on + strand at 950.197 kb on - strand at 950.197 kb on - strand at 950.197 kb on - strand at 950.778 kb on - strand, within AO353_04410 at 950.861 kb on + strand, within AO353_04410 at 950.961 kb on - strand, within AO353_04410 at 950.975 kb on - strand, within AO353_04410
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 0.12 mg/ml remove 947,816 + AO353_04400 0.30 -0.7 947,817 - AO353_04400 0.30 +0.9 947,822 - AO353_04400 0.31 -0.1 948,156 + AO353_04400 0.57 +0.3 948,232 + AO353_04400 0.63 +1.1 948,232 + AO353_04400 0.63 -0.1 948,232 + AO353_04400 0.63 -0.7 948,232 + AO353_04400 0.63 -0.6 948,232 + AO353_04400 0.63 -0.4 948,232 + AO353_04400 0.63 -0.9 948,232 + AO353_04400 0.63 -0.5 948,233 - AO353_04400 0.63 -1.0 948,233 - AO353_04400 0.63 +0.3 948,233 - AO353_04400 0.63 -1.5 948,233 - AO353_04400 0.63 -1.7 948,233 - AO353_04400 0.63 +0.4 948,233 - AO353_04400 0.63 -0.8 948,233 - AO353_04400 0.63 -1.6 948,233 - AO353_04400 0.63 +0.1 948,233 - AO353_04400 0.63 +0.5 948,233 - AO353_04400 0.63 +0.9 948,233 - AO353_04400 0.63 +0.6 948,319 + AO353_04400 0.70 +0.5 948,319 + AO353_04400 0.70 -3.1 948,319 + AO353_04400 0.70 -0.9 948,320 - AO353_04400 0.70 +0.1 948,329 + AO353_04400 0.71 -0.4 948,329 + AO353_04400 0.71 -1.1 948,329 + AO353_04400 0.71 -1.1 948,330 - AO353_04400 0.71 +1.4 948,330 - AO353_04400 0.71 +0.3 948,330 - AO353_04400 0.71 +0.4 948,330 - AO353_04400 0.71 +0.2 948,330 - AO353_04400 0.71 +0.2 948,330 - AO353_04400 0.71 -0.3 948,647 + +1.3 948,648 - -0.1 948,695 - +0.6 948,695 - -0.1 948,695 - +0.5 948,724 - +1.3 948,726 + +0.6 948,726 + +1.5 948,726 + +1.1 948,726 + -0.1 948,727 - +1.9 948,727 - -0.9 948,727 - +0.6 948,727 - +1.2 948,727 - -2.6 948,727 - +0.6 948,773 + +1.1 948,773 + +0.7 948,774 - +0.1 948,786 + +0.2 948,786 + -1.1 948,786 + +0.0 948,786 + -1.9 948,787 - -1.8 948,787 - +1.6 948,787 - +1.6 948,870 + +0.2 948,871 - +1.4 948,871 - +1.6 948,871 - -0.2 948,879 + -1.5 948,879 + +0.6 948,879 + -0.0 948,879 + -0.6 948,879 + -0.1 948,879 + +0.8 948,879 + -0.7 948,879 + +0.4 948,879 + +0.4 948,880 - -0.7 948,880 - +1.1 948,880 - +0.5 948,880 - -0.7 948,880 - -0.1 948,880 - +0.7 948,880 - -0.0 948,880 - -0.7 948,880 - -0.4 948,880 - -0.3 948,885 + -0.4 949,000 + AO353_04405 0.18 -0.5 949,001 - AO353_04405 0.18 -0.5 949,001 - AO353_04405 0.18 -0.6 949,114 - AO353_04405 0.26 +1.3 949,153 + AO353_04405 0.29 -1.5 949,153 + AO353_04405 0.29 -0.9 949,154 - AO353_04405 0.29 -0.7 949,154 - AO353_04405 0.29 +0.4 949,278 - AO353_04405 0.39 +2.0 949,404 + AO353_04405 0.48 -0.8 949,404 + AO353_04405 0.48 -1.1 949,404 + AO353_04405 0.48 -0.5 949,404 + AO353_04405 0.48 -0.9 949,405 - AO353_04405 0.48 -0.7 949,501 - AO353_04405 0.56 -1.6 949,558 - AO353_04405 0.60 -0.1 949,558 - AO353_04405 0.60 +1.5 949,558 - AO353_04405 0.60 -1.6 949,584 + AO353_04405 0.62 -0.7 949,584 + AO353_04405 0.62 +0.9 949,584 + AO353_04405 0.62 -0.5 949,585 - AO353_04405 0.62 +0.6 949,585 - AO353_04405 0.62 +1.4 949,585 - AO353_04405 0.62 -0.1 949,606 - AO353_04405 0.64 +0.9 949,606 - AO353_04405 0.64 -0.1 949,890 - AO353_04405 0.85 -0.5 949,908 + AO353_04405 0.87 -0.7 949,908 + AO353_04405 0.87 -2.3 949,908 + AO353_04405 0.87 -2.6 949,908 + AO353_04405 0.87 -1.3 949,908 + AO353_04405 0.87 +1.3 949,908 + AO353_04405 0.87 +2.5 949,908 + AO353_04405 0.87 -2.3 949,909 - AO353_04405 0.87 +1.1 949,998 + -0.5 949,998 + +0.5 949,998 + +0.2 949,999 - +1.5 949,999 - +0.1 949,999 - +0.5 950,060 + +1.5 950,060 + -0.1 950,060 + +1.6 950,061 - +0.2 950,061 - -0.9 950,085 + +0.3 950,085 + -0.1 950,086 - -2.6 950,086 - +0.3 950,086 - +0.9 950,086 - -1.4 950,116 - -1.1 950,116 - -1.1 950,121 + +0.3 950,121 + +0.2 950,121 + -0.7 950,121 + -2.1 950,121 + +0.8 950,121 + -1.1 950,121 + -0.2 950,121 + -0.1 950,121 + -0.7 950,121 + +1.4 950,121 + +0.1 950,121 + +0.0 950,122 - -1.1 950,122 - +0.7 950,122 - +1.9 950,122 - +2.1 950,122 - +0.4 950,160 + -2.1 950,161 - +0.4 950,188 + +0.5 950,188 + +0.9 950,188 + -1.5 950,188 + -0.1 950,188 + -0.8 950,189 - -2.3 950,196 + +0.5 950,196 + +3.2 950,196 + -2.3 950,196 + +0.9 950,196 + +1.2 950,197 - +1.1 950,197 - -0.5 950,197 - -1.4 950,778 - AO353_04410 0.50 +0.6 950,861 + AO353_04410 0.57 +0.9 950,961 - AO353_04410 0.65 -0.1 950,975 - AO353_04410 0.67 -0.5
Or see this region's nucleotide sequence