Experiment: Ceftazidime 0.12 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_04100 and AO353_04105 are separated by 160 nucleotides AO353_04105 and AO353_04110 are separated by 129 nucleotides
AO353_04100: AO353_04100 - hypothetical protein, at 880,346 to 881,038
_04100
AO353_04105: AO353_04105 - argininosuccinate synthase, at 881,199 to 882,416
_04105
AO353_04110: AO353_04110 - hypothetical protein, at 882,546 to 883,454
_04110
Position (kb) 881
882
883 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 880.291 kb on - strand at 880.320 kb on - strand at 880.320 kb on - strand at 880.466 kb on + strand, within AO353_04100 at 880.466 kb on + strand, within AO353_04100 at 880.467 kb on - strand, within AO353_04100 at 880.467 kb on - strand, within AO353_04100 at 880.467 kb on - strand, within AO353_04100 at 880.496 kb on + strand, within AO353_04100 at 880.497 kb on - strand, within AO353_04100 at 880.517 kb on - strand, within AO353_04100 at 880.531 kb on + strand, within AO353_04100 at 880.536 kb on - strand, within AO353_04100 at 880.547 kb on + strand, within AO353_04100 at 880.636 kb on + strand, within AO353_04100 at 880.684 kb on + strand, within AO353_04100 at 880.694 kb on + strand, within AO353_04100 at 880.727 kb on + strand, within AO353_04100 at 880.727 kb on + strand, within AO353_04100 at 880.729 kb on + strand, within AO353_04100 at 880.729 kb on + strand, within AO353_04100 at 880.729 kb on + strand, within AO353_04100 at 880.729 kb on + strand, within AO353_04100 at 880.729 kb on + strand, within AO353_04100 at 880.729 kb on + strand, within AO353_04100 at 880.729 kb on + strand, within AO353_04100 at 880.729 kb on + strand, within AO353_04100 at 880.750 kb on + strand, within AO353_04100 at 880.750 kb on + strand, within AO353_04100 at 880.751 kb on - strand, within AO353_04100 at 880.751 kb on - strand, within AO353_04100 at 880.786 kb on - strand, within AO353_04100 at 880.985 kb on + strand at 880.996 kb on + strand at 881.006 kb on - strand at 881.086 kb on + strand at 881.162 kb on - strand at 881.285 kb on - strand at 881.285 kb on - strand at 881.285 kb on - strand at 881.309 kb on + strand at 881.310 kb on - strand at 881.310 kb on - strand at 881.310 kb on - strand at 881.374 kb on + strand, within AO353_04105 at 881.470 kb on + strand, within AO353_04105 at 881.470 kb on + strand, within AO353_04105 at 881.471 kb on - strand, within AO353_04105 at 881.471 kb on - strand, within AO353_04105 at 881.485 kb on + strand, within AO353_04105 at 881.485 kb on + strand, within AO353_04105 at 881.485 kb on + strand, within AO353_04105 at 881.485 kb on + strand, within AO353_04105 at 881.486 kb on - strand, within AO353_04105 at 881.486 kb on - strand, within AO353_04105 at 881.486 kb on - strand, within AO353_04105 at 881.486 kb on - strand, within AO353_04105 at 881.486 kb on - strand, within AO353_04105 at 881.486 kb on - strand, within AO353_04105 at 881.486 kb on - strand, within AO353_04105 at 881.489 kb on + strand, within AO353_04105 at 881.489 kb on + strand, within AO353_04105 at 881.489 kb on + strand, within AO353_04105 at 881.489 kb on + strand, within AO353_04105 at 881.489 kb on + strand, within AO353_04105 at 881.490 kb on - strand, within AO353_04105 at 881.490 kb on - strand, within AO353_04105 at 881.490 kb on - strand at 881.590 kb on + strand, within AO353_04105 at 881.617 kb on + strand, within AO353_04105 at 881.740 kb on + strand, within AO353_04105 at 881.740 kb on + strand, within AO353_04105 at 881.756 kb on - strand, within AO353_04105 at 881.756 kb on - strand, within AO353_04105 at 881.804 kb on + strand, within AO353_04105 at 881.804 kb on + strand, within AO353_04105 at 881.804 kb on + strand, within AO353_04105 at 881.804 kb on + strand, within AO353_04105 at 881.804 kb on + strand, within AO353_04105 at 881.804 kb on + strand, within AO353_04105 at 881.804 kb on + strand, within AO353_04105 at 881.804 kb on + strand, within AO353_04105 at 881.805 kb on - strand, within AO353_04105 at 881.805 kb on - strand, within AO353_04105 at 881.805 kb on - strand, within AO353_04105 at 881.805 kb on - strand, within AO353_04105 at 881.805 kb on - strand, within AO353_04105 at 881.805 kb on - strand, within AO353_04105 at 881.805 kb on - strand, within AO353_04105 at 881.828 kb on + strand, within AO353_04105 at 881.828 kb on + strand, within AO353_04105 at 881.829 kb on - strand, within AO353_04105 at 881.852 kb on - strand, within AO353_04105 at 881.938 kb on + strand, within AO353_04105 at 881.938 kb on + strand, within AO353_04105 at 882.017 kb on - strand, within AO353_04105 at 882.017 kb on - strand, within AO353_04105 at 882.143 kb on + strand, within AO353_04105 at 882.154 kb on + strand, within AO353_04105 at 882.154 kb on + strand, within AO353_04105 at 882.166 kb on + strand, within AO353_04105 at 882.235 kb on + strand, within AO353_04105 at 882.235 kb on + strand, within AO353_04105 at 882.235 kb on + strand, within AO353_04105 at 882.236 kb on - strand, within AO353_04105 at 882.246 kb on + strand, within AO353_04105 at 882.247 kb on - strand, within AO353_04105 at 882.332 kb on + strand at 882.332 kb on + strand at 882.332 kb on + strand at 882.332 kb on + strand at 882.332 kb on + strand at 882.332 kb on + strand at 882.332 kb on + strand at 882.333 kb on - strand at 882.333 kb on - strand at 882.333 kb on - strand at 882.333 kb on - strand at 882.333 kb on - strand at 882.333 kb on - strand at 882.333 kb on - strand at 882.333 kb on - strand at 882.333 kb on - strand at 882.333 kb on - strand at 882.333 kb on - strand at 882.333 kb on - strand at 882.334 kb on + strand at 882.334 kb on + strand at 882.334 kb on + strand at 882.334 kb on + strand at 882.334 kb on + strand at 882.334 kb on + strand at 882.334 kb on + strand at 882.334 kb on + strand at 882.334 kb on + strand at 882.334 kb on + strand at 882.334 kb on + strand at 882.334 kb on + strand at 882.334 kb on + strand at 882.334 kb on + strand at 882.334 kb on + strand at 882.334 kb on + strand at 882.334 kb on + strand at 882.335 kb on - strand at 882.335 kb on - strand at 882.335 kb on - strand at 882.335 kb on - strand at 882.335 kb on - strand at 882.335 kb on - strand at 882.335 kb on - strand at 882.335 kb on - strand at 882.335 kb on - strand at 882.335 kb on - strand at 882.335 kb on - strand at 882.335 kb on - strand at 882.335 kb on - strand at 882.335 kb on - strand at 882.335 kb on - strand at 882.335 kb on - strand at 882.335 kb on - strand at 882.335 kb on - strand at 882.335 kb on - strand at 882.339 kb on - strand at 882.386 kb on - strand at 882.386 kb on - strand at 882.405 kb on + strand at 882.405 kb on + strand at 882.405 kb on + strand at 882.405 kb on + strand at 882.406 kb on - strand at 882.406 kb on - strand at 882.406 kb on - strand at 882.406 kb on - strand at 882.406 kb on - strand at 882.406 kb on - strand at 882.477 kb on + strand at 882.477 kb on + strand at 882.495 kb on + strand at 882.495 kb on + strand at 882.495 kb on + strand at 882.495 kb on + strand at 882.495 kb on + strand at 882.495 kb on + strand at 882.495 kb on + strand at 882.516 kb on + strand at 882.516 kb on + strand at 882.516 kb on + strand at 882.517 kb on - strand at 882.517 kb on - strand at 882.517 kb on - strand at 882.517 kb on - strand at 882.517 kb on - strand at 882.596 kb on + strand at 882.952 kb on + strand, within AO353_04110 at 882.952 kb on + strand, within AO353_04110 at 882.953 kb on - strand, within AO353_04110 at 882.953 kb on - strand, within AO353_04110 at 882.989 kb on - strand, within AO353_04110 at 883.057 kb on + strand, within AO353_04110 at 883.057 kb on + strand, within AO353_04110 at 883.058 kb on - strand, within AO353_04110 at 883.058 kb on - strand, within AO353_04110 at 883.249 kb on + strand, within AO353_04110 at 883.249 kb on + strand, within AO353_04110 at 883.249 kb on + strand, within AO353_04110 at 883.250 kb on - strand, within AO353_04110 at 883.250 kb on - strand, within AO353_04110 at 883.250 kb on - strand, within AO353_04110 at 883.250 kb on - strand, within AO353_04110
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 0.12 mg/ml remove 880,291 - +0.8 880,320 - +0.5 880,320 - +0.1 880,466 + AO353_04100 0.17 +0.3 880,466 + AO353_04100 0.17 -1.5 880,467 - AO353_04100 0.17 -1.3 880,467 - AO353_04100 0.17 +1.6 880,467 - AO353_04100 0.17 +0.2 880,496 + AO353_04100 0.22 -1.2 880,497 - AO353_04100 0.22 -0.4 880,517 - AO353_04100 0.25 +0.5 880,531 + AO353_04100 0.27 +0.8 880,536 - AO353_04100 0.27 -0.2 880,547 + AO353_04100 0.29 -0.7 880,636 + AO353_04100 0.42 +0.2 880,684 + AO353_04100 0.49 -0.0 880,694 + AO353_04100 0.50 +0.6 880,727 + AO353_04100 0.55 -0.2 880,727 + AO353_04100 0.55 +0.4 880,729 + AO353_04100 0.55 +0.6 880,729 + AO353_04100 0.55 -0.3 880,729 + AO353_04100 0.55 +0.3 880,729 + AO353_04100 0.55 -0.2 880,729 + AO353_04100 0.55 +0.3 880,729 + AO353_04100 0.55 +0.4 880,729 + AO353_04100 0.55 +1.8 880,729 + AO353_04100 0.55 -1.0 880,750 + AO353_04100 0.58 +0.5 880,750 + AO353_04100 0.58 +0.0 880,751 - AO353_04100 0.58 -0.2 880,751 - AO353_04100 0.58 -1.0 880,786 - AO353_04100 0.63 +0.2 880,985 + -1.2 880,996 + -0.2 881,006 - -1.5 881,086 + +2.4 881,162 - -0.7 881,285 - -0.2 881,285 - -1.5 881,285 - +0.3 881,309 + -0.2 881,310 - +0.3 881,310 - -2.2 881,310 - -1.7 881,374 + AO353_04105 0.14 -0.2 881,470 + AO353_04105 0.22 +0.8 881,470 + AO353_04105 0.22 -0.7 881,471 - AO353_04105 0.22 -0.7 881,471 - AO353_04105 0.22 -0.5 881,485 + AO353_04105 0.23 -0.2 881,485 + AO353_04105 0.23 -1.3 881,485 + AO353_04105 0.23 +0.1 881,485 + AO353_04105 0.23 +1.6 881,486 - AO353_04105 0.24 +0.8 881,486 - AO353_04105 0.24 -1.6 881,486 - AO353_04105 0.24 -1.7 881,486 - AO353_04105 0.24 +0.8 881,486 - AO353_04105 0.24 +1.8 881,486 - AO353_04105 0.24 -0.9 881,486 - AO353_04105 0.24 -0.2 881,489 + AO353_04105 0.24 -0.6 881,489 + AO353_04105 0.24 +0.1 881,489 + AO353_04105 0.24 -0.2 881,489 + AO353_04105 0.24 -1.0 881,489 + AO353_04105 0.24 -0.7 881,490 - AO353_04105 0.24 -1.7 881,490 - AO353_04105 0.24 +1.1 881,490 - +0.8 881,590 + AO353_04105 0.32 -0.7 881,617 + AO353_04105 0.34 +2.8 881,740 + AO353_04105 0.44 -1.7 881,740 + AO353_04105 0.44 -0.7 881,756 - AO353_04105 0.46 -1.5 881,756 - AO353_04105 0.46 -0.2 881,804 + AO353_04105 0.50 +1.2 881,804 + AO353_04105 0.50 -2.2 881,804 + AO353_04105 0.50 -0.2 881,804 + AO353_04105 0.50 +0.3 881,804 + AO353_04105 0.50 -2.7 881,804 + AO353_04105 0.50 -0.6 881,804 + AO353_04105 0.50 +0.8 881,804 + AO353_04105 0.50 -0.2 881,805 - AO353_04105 0.50 -0.2 881,805 - AO353_04105 0.50 -0.2 881,805 - AO353_04105 0.50 -0.4 881,805 - AO353_04105 0.50 -1.5 881,805 - AO353_04105 0.50 -1.5 881,805 - AO353_04105 0.50 +2.4 881,805 - AO353_04105 0.50 -0.2 881,828 + AO353_04105 0.52 -0.6 881,828 + AO353_04105 0.52 -0.7 881,829 - AO353_04105 0.52 +0.4 881,852 - AO353_04105 0.54 -1.2 881,938 + AO353_04105 0.61 -0.1 881,938 + AO353_04105 0.61 -2.0 882,017 - AO353_04105 0.67 -1.5 882,017 - AO353_04105 0.67 -0.6 882,143 + AO353_04105 0.78 -2.3 882,154 + AO353_04105 0.78 -0.2 882,154 + AO353_04105 0.78 -0.5 882,166 + AO353_04105 0.79 -0.5 882,235 + AO353_04105 0.85 +2.4 882,235 + AO353_04105 0.85 -0.5 882,235 + AO353_04105 0.85 -0.2 882,236 - AO353_04105 0.85 -1.3 882,246 + AO353_04105 0.86 +1.6 882,247 - AO353_04105 0.86 -1.0 882,332 + +0.8 882,332 + +1.8 882,332 + -0.2 882,332 + +0.4 882,332 + +0.1 882,332 + +1.1 882,332 + -0.6 882,333 - +1.0 882,333 - -0.3 882,333 - -0.7 882,333 - -1.2 882,333 - -0.0 882,333 - -0.2 882,333 - -0.3 882,333 - -1.0 882,333 - +0.8 882,333 - -0.2 882,333 - -0.2 882,333 - +0.3 882,334 + -1.7 882,334 + -0.6 882,334 + -0.2 882,334 + +0.5 882,334 + -2.0 882,334 + +0.8 882,334 + -1.7 882,334 + +1.4 882,334 + +0.1 882,334 + +0.7 882,334 + +0.3 882,334 + -1.7 882,334 + -1.3 882,334 + -0.2 882,334 + -3.3 882,334 + -2.0 882,334 + -1.2 882,335 - -0.3 882,335 - -1.2 882,335 - +0.5 882,335 - +0.1 882,335 - +0.3 882,335 - -0.5 882,335 - +0.6 882,335 - -0.3 882,335 - -1.7 882,335 - +0.4 882,335 - +0.4 882,335 - +0.6 882,335 - +1.2 882,335 - +0.1 882,335 - +1.8 882,335 - -0.7 882,335 - +0.2 882,335 - -0.9 882,335 - -0.3 882,339 - +0.8 882,386 - +1.3 882,386 - -3.1 882,405 + +0.5 882,405 + -1.0 882,405 + +0.4 882,405 + +0.8 882,406 - -0.5 882,406 - -0.9 882,406 - +0.8 882,406 - -1.5 882,406 - -1.5 882,406 - -0.2 882,477 + -1.7 882,477 + +0.2 882,495 + -1.5 882,495 + +0.0 882,495 + +0.6 882,495 + -0.7 882,495 + -1.0 882,495 + +0.1 882,495 + -0.2 882,516 + +0.1 882,516 + -2.1 882,516 + -1.2 882,517 - -0.2 882,517 - +0.8 882,517 - +0.4 882,517 - +1.4 882,517 - -0.4 882,596 + -0.2 882,952 + AO353_04110 0.45 +0.3 882,952 + AO353_04110 0.45 -0.1 882,953 - AO353_04110 0.45 +0.4 882,953 - AO353_04110 0.45 -1.7 882,989 - AO353_04110 0.49 -0.7 883,057 + AO353_04110 0.56 +0.5 883,057 + AO353_04110 0.56 -0.2 883,058 - AO353_04110 0.56 -0.2 883,058 - AO353_04110 0.56 +1.1 883,249 + AO353_04110 0.77 -0.2 883,249 + AO353_04110 0.77 +0.6 883,249 + AO353_04110 0.77 +2.4 883,250 - AO353_04110 0.77 -0.5 883,250 - AO353_04110 0.77 -0.5 883,250 - AO353_04110 0.77 -0.3 883,250 - AO353_04110 0.77 -0.4
Or see this region's nucleotide sequence