Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_03485

Experiment: Ceftazidime 0.12 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_03480 and AO353_03485 are separated by 57 nucleotidesAO353_03485 and AO353_03490 are separated by 182 nucleotides AO353_03480: AO353_03480 - carbamate kinase, at 744,313 to 745,242 _03480 AO353_03485: AO353_03485 - acetyl-CoA carboxylase, at 745,300 to 745,656 _03485 AO353_03490: AO353_03490 - Fis family transcriptional regulator, at 745,839 to 747,347 _03490 Position (kb) 745 746Strain fitness (log2 ratio) -2 -1 0 1 2 3at 744.312 kb on + strandat 744.312 kb on + strandat 744.313 kb on - strandat 744.393 kb on + strandat 744.502 kb on + strand, within AO353_03480at 744.502 kb on + strand, within AO353_03480at 744.503 kb on - strand, within AO353_03480at 744.503 kb on - strand, within AO353_03480at 744.503 kb on - strand, within AO353_03480at 744.565 kb on + strandat 744.565 kb on + strand, within AO353_03480at 744.566 kb on - strand, within AO353_03480at 744.694 kb on + strand, within AO353_03480at 744.694 kb on + strand, within AO353_03480at 744.694 kb on + strand, within AO353_03480at 744.695 kb on - strand, within AO353_03480at 744.883 kb on + strand, within AO353_03480at 744.883 kb on + strand, within AO353_03480at 744.883 kb on + strand, within AO353_03480at 744.883 kb on + strand, within AO353_03480at 744.883 kb on + strand, within AO353_03480at 744.883 kb on + strand, within AO353_03480at 744.884 kb on - strand, within AO353_03480at 744.884 kb on - strand, within AO353_03480at 744.884 kb on - strand, within AO353_03480at 744.884 kb on - strand, within AO353_03480at 744.884 kb on - strand, within AO353_03480at 744.884 kb on - strand, within AO353_03480at 745.227 kb on + strandat 745.234 kb on + strandat 745.234 kb on + strandat 745.234 kb on + strandat 745.235 kb on - strandat 745.235 kb on - strandat 745.235 kb on - strandat 745.235 kb on - strandat 745.235 kb on - strandat 745.241 kb on - strandat 745.241 kb on - strandat 745.307 kb on + strandat 745.307 kb on + strandat 745.307 kb on + strandat 745.307 kb on + strandat 745.307 kb on + strandat 745.307 kb on + strandat 745.307 kb on + strandat 745.307 kb on + strandat 745.308 kb on - strandat 745.308 kb on - strandat 745.308 kb on - strandat 745.308 kb on - strandat 745.308 kb on - strandat 745.308 kb on - strandat 745.366 kb on + strand, within AO353_03485at 745.366 kb on + strand, within AO353_03485at 745.367 kb on - strand, within AO353_03485at 745.367 kb on - strand, within AO353_03485at 745.367 kb on - strand, within AO353_03485at 745.367 kb on - strand, within AO353_03485at 745.413 kb on + strand, within AO353_03485at 745.413 kb on + strand, within AO353_03485at 745.413 kb on + strand, within AO353_03485at 745.413 kb on + strand, within AO353_03485at 745.413 kb on + strand, within AO353_03485at 745.413 kb on + strand, within AO353_03485at 745.413 kb on + strand, within AO353_03485at 745.413 kb on + strand, within AO353_03485at 745.414 kb on - strand, within AO353_03485at 745.414 kb on - strand, within AO353_03485at 745.414 kb on - strand, within AO353_03485at 745.414 kb on - strand, within AO353_03485at 745.414 kb on - strand, within AO353_03485at 745.414 kb on - strand, within AO353_03485at 745.414 kb on - strand, within AO353_03485at 745.414 kb on - strand, within AO353_03485at 745.414 kb on - strand, within AO353_03485at 745.415 kb on + strand, within AO353_03485at 745.415 kb on + strand, within AO353_03485at 745.415 kb on + strand, within AO353_03485at 745.415 kb on + strand, within AO353_03485at 745.415 kb on + strand, within AO353_03485at 745.415 kb on + strand, within AO353_03485at 745.415 kb on + strand, within AO353_03485at 745.415 kb on + strand, within AO353_03485at 745.415 kb on + strand, within AO353_03485at 745.415 kb on + strand, within AO353_03485at 745.415 kb on + strand, within AO353_03485at 745.415 kb on + strand, within AO353_03485at 745.415 kb on + strand, within AO353_03485at 745.415 kb on + strand, within AO353_03485at 745.415 kb on + strand, within AO353_03485at 745.415 kb on + strand, within AO353_03485at 745.415 kb on + strand, within AO353_03485at 745.415 kb on + strand, within AO353_03485at 745.415 kb on + strand, within AO353_03485at 745.416 kb on - strand, within AO353_03485at 745.416 kb on - strand, within AO353_03485at 745.416 kb on - strand, within AO353_03485at 745.416 kb on - strand, within AO353_03485at 745.416 kb on - strand, within AO353_03485at 745.416 kb on - strand, within AO353_03485at 745.416 kb on - strand, within AO353_03485at 745.416 kb on - strand, within AO353_03485at 745.416 kb on - strand, within AO353_03485at 745.416 kb on - strand, within AO353_03485at 745.416 kb on - strand, within AO353_03485at 745.416 kb on - strand, within AO353_03485at 745.416 kb on - strand, within AO353_03485at 745.416 kb on - strand, within AO353_03485at 745.416 kb on - strand, within AO353_03485at 745.416 kb on - strand, within AO353_03485at 745.534 kb on + strand, within AO353_03485at 745.534 kb on + strand, within AO353_03485at 745.534 kb on + strand, within AO353_03485at 745.534 kb on + strand, within AO353_03485at 745.534 kb on + strand, within AO353_03485at 745.535 kb on - strand, within AO353_03485at 745.535 kb on - strand, within AO353_03485at 745.535 kb on - strand, within AO353_03485at 745.535 kb on - strand, within AO353_03485at 745.576 kb on + strand, within AO353_03485at 745.576 kb on + strand, within AO353_03485at 745.576 kb on + strand, within AO353_03485at 745.576 kb on + strand, within AO353_03485at 745.576 kb on + strand, within AO353_03485at 745.576 kb on + strand, within AO353_03485at 745.577 kb on - strand, within AO353_03485at 745.577 kb on - strand, within AO353_03485at 745.577 kb on - strand, within AO353_03485at 745.577 kb on - strand, within AO353_03485at 745.577 kb on - strand, within AO353_03485at 745.579 kb on + strand, within AO353_03485at 745.579 kb on + strand, within AO353_03485at 745.579 kb on + strand, within AO353_03485at 745.579 kb on + strand, within AO353_03485at 745.579 kb on + strand, within AO353_03485at 745.579 kb on + strand, within AO353_03485at 745.579 kb on + strand, within AO353_03485at 745.580 kb on - strand, within AO353_03485at 745.580 kb on - strand, within AO353_03485at 745.580 kb on - strand, within AO353_03485at 745.580 kb on - strand, within AO353_03485at 745.601 kb on + strand, within AO353_03485at 745.601 kb on + strand, within AO353_03485at 745.601 kb on + strand, within AO353_03485at 745.601 kb on + strand, within AO353_03485at 745.602 kb on - strand, within AO353_03485at 745.602 kb on - strand, within AO353_03485at 745.602 kb on - strand, within AO353_03485at 745.602 kb on - strand, within AO353_03485at 745.602 kb on - strand, within AO353_03485at 745.654 kb on + strandat 745.654 kb on + strandat 745.654 kb on + strandat 745.654 kb on + strandat 745.655 kb on - strandat 745.655 kb on - strandat 745.655 kb on - strandat 745.655 kb on - strandat 745.655 kb on - strandat 745.655 kb on - strandat 745.655 kb on - strandat 745.655 kb on - strandat 745.655 kb on - strandat 745.657 kb on + strandat 745.657 kb on + strandat 745.658 kb on - strandat 745.658 kb on - strandat 745.709 kb on + strandat 745.709 kb on + strandat 745.710 kb on - strandat 745.710 kb on - strandat 745.710 kb on - strandat 745.710 kb on - strandat 745.717 kb on - strandat 745.717 kb on - strandat 745.717 kb on - strandat 745.717 kb on - strandat 745.755 kb on + strandat 745.755 kb on + strandat 745.766 kb on + strandat 745.766 kb on + strandat 745.799 kb on + strandat 745.799 kb on + strandat 745.799 kb on + strandat 745.799 kb on + strandat 745.799 kb on + strandat 745.799 kb on + strandat 745.799 kb on + strandat 745.800 kb on - strandat 745.800 kb on - strandat 745.800 kb on - strandat 745.800 kb on - strandat 745.800 kb on - strandat 745.800 kb on - strandat 745.800 kb on - strandat 745.800 kb on - strandat 745.953 kb on + strandat 745.953 kb on + strandat 745.954 kb on - strandat 746.172 kb on + strand, within AO353_03490at 746.172 kb on + strand, within AO353_03490at 746.172 kb on + strand, within AO353_03490at 746.172 kb on + strand, within AO353_03490at 746.172 kb on + strand, within AO353_03490at 746.172 kb on + strand, within AO353_03490at 746.346 kb on + strand, within AO353_03490at 746.346 kb on + strand, within AO353_03490at 746.346 kb on + strand, within AO353_03490at 746.346 kb on + strand, within AO353_03490at 746.346 kb on + strand, within AO353_03490at 746.346 kb on + strand, within AO353_03490at 746.346 kb on + strand, within AO353_03490at 746.346 kb on + strand, within AO353_03490at 746.346 kb on + strand, within AO353_03490at 746.346 kb on + strand, within AO353_03490at 746.347 kb on - strand, within AO353_03490at 746.347 kb on - strand, within AO353_03490at 746.347 kb on - strand, within AO353_03490at 746.347 kb on - strand, within AO353_03490at 746.347 kb on - strand, within AO353_03490at 746.347 kb on - strand, within AO353_03490at 746.347 kb on - strand, within AO353_03490at 746.347 kb on - strand, within AO353_03490at 746.347 kb on - strand, within AO353_03490at 746.347 kb on - strand, within AO353_03490at 746.447 kb on - strand, within AO353_03490

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Per-strain Table

Position Strand Gene LocusTag Fraction Ceftazidime 0.12 mg/ml
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744,312 + -0.4
744,312 + -0.0
744,313 - +1.0
744,393 + +0.2
744,502 + AO353_03480 0.20 +0.8
744,502 + AO353_03480 0.20 +1.5
744,503 - AO353_03480 0.20 -0.4
744,503 - AO353_03480 0.20 +0.3
744,503 - AO353_03480 0.20 -2.2
744,565 + -1.2
744,565 + AO353_03480 0.27 +0.8
744,566 - AO353_03480 0.27 -1.4
744,694 + AO353_03480 0.41 -0.2
744,694 + AO353_03480 0.41 +1.8
744,694 + AO353_03480 0.41 +0.2
744,695 - AO353_03480 0.41 -0.8
744,883 + AO353_03480 0.61 -0.8
744,883 + AO353_03480 0.61 +0.5
744,883 + AO353_03480 0.61 +0.8
744,883 + AO353_03480 0.61 +0.8
744,883 + AO353_03480 0.61 -0.6
744,883 + AO353_03480 0.61 +0.1
744,884 - AO353_03480 0.61 -1.6
744,884 - AO353_03480 0.61 +0.6
744,884 - AO353_03480 0.61 -1.0
744,884 - AO353_03480 0.61 -0.6
744,884 - AO353_03480 0.61 +0.8
744,884 - AO353_03480 0.61 -1.2
745,227 + +0.1
745,234 + -0.0
745,234 + -0.8
745,234 + -1.1
745,235 - +1.4
745,235 - +0.0
745,235 - -0.1
745,235 - -0.3
745,235 - +1.0
745,241 - +0.9
745,241 - +0.2
745,307 + +0.8
745,307 + -0.0
745,307 + -0.2
745,307 + +0.2
745,307 + +1.1
745,307 + +1.6
745,307 + +2.1
745,307 + -0.2
745,308 - +0.3
745,308 - +1.0
745,308 - +1.5
745,308 - +0.8
745,308 - -0.5
745,308 - -1.4
745,366 + AO353_03485 0.18 +0.2
745,366 + AO353_03485 0.18 -0.8
745,367 - AO353_03485 0.19 +0.6
745,367 - AO353_03485 0.19 -2.2
745,367 - AO353_03485 0.19 +0.4
745,367 - AO353_03485 0.19 +0.6
745,413 + AO353_03485 0.32 +0.8
745,413 + AO353_03485 0.32 -2.0
745,413 + AO353_03485 0.32 +0.5
745,413 + AO353_03485 0.32 -1.3
745,413 + AO353_03485 0.32 +0.4
745,413 + AO353_03485 0.32 +0.4
745,413 + AO353_03485 0.32 -2.2
745,413 + AO353_03485 0.32 -0.0
745,414 - AO353_03485 0.32 -0.2
745,414 - AO353_03485 0.32 +0.7
745,414 - AO353_03485 0.32 -0.8
745,414 - AO353_03485 0.32 +0.9
745,414 - AO353_03485 0.32 +0.8
745,414 - AO353_03485 0.32 -0.6
745,414 - AO353_03485 0.32 +1.1
745,414 - AO353_03485 0.32 +0.1
745,414 - AO353_03485 0.32 -0.1
745,415 + AO353_03485 0.32 +2.6
745,415 + AO353_03485 0.32 -0.2
745,415 + AO353_03485 0.32 -0.2
745,415 + AO353_03485 0.32 +0.3
745,415 + AO353_03485 0.32 +1.2
745,415 + AO353_03485 0.32 -0.2
745,415 + AO353_03485 0.32 -0.2
745,415 + AO353_03485 0.32 +1.4
745,415 + AO353_03485 0.32 -0.8
745,415 + AO353_03485 0.32 +0.8
745,415 + AO353_03485 0.32 -0.2
745,415 + AO353_03485 0.32 -0.5
745,415 + AO353_03485 0.32 -0.2
745,415 + AO353_03485 0.32 +0.5
745,415 + AO353_03485 0.32 +2.2
745,415 + AO353_03485 0.32 +0.4
745,415 + AO353_03485 0.32 +1.0
745,415 + AO353_03485 0.32 -0.9
745,415 + AO353_03485 0.32 +2.2
745,416 - AO353_03485 0.32 +0.0
745,416 - AO353_03485 0.32 +0.4
745,416 - AO353_03485 0.32 -0.0
745,416 - AO353_03485 0.32 -0.9
745,416 - AO353_03485 0.32 +0.8
745,416 - AO353_03485 0.32 -0.2
745,416 - AO353_03485 0.32 +0.8
745,416 - AO353_03485 0.32 +2.8
745,416 - AO353_03485 0.32 -0.4
745,416 - AO353_03485 0.32 +0.4
745,416 - AO353_03485 0.32 +0.8
745,416 - AO353_03485 0.32 -0.2
745,416 - AO353_03485 0.32 -0.9
745,416 - AO353_03485 0.32 +0.1
745,416 - AO353_03485 0.32 -0.6
745,416 - AO353_03485 0.32 +0.0
745,534 + AO353_03485 0.66 -0.2
745,534 + AO353_03485 0.66 +0.5
745,534 + AO353_03485 0.66 +0.4
745,534 + AO353_03485 0.66 +2.4
745,534 + AO353_03485 0.66 +0.4
745,535 - AO353_03485 0.66 -1.6
745,535 - AO353_03485 0.66 +2.0
745,535 - AO353_03485 0.66 +0.6
745,535 - AO353_03485 0.66 +1.2
745,576 + AO353_03485 0.77 -1.6
745,576 + AO353_03485 0.77 -0.9
745,576 + AO353_03485 0.77 +0.5
745,576 + AO353_03485 0.77 -0.2
745,576 + AO353_03485 0.77 -0.1
745,576 + AO353_03485 0.77 -0.8
745,577 - AO353_03485 0.78 -0.2
745,577 - AO353_03485 0.78 +1.0
745,577 - AO353_03485 0.78 +0.6
745,577 - AO353_03485 0.78 +0.8
745,577 - AO353_03485 0.78 +0.4
745,579 + AO353_03485 0.78 -0.4
745,579 + AO353_03485 0.78 +1.8
745,579 + AO353_03485 0.78 +1.0
745,579 + AO353_03485 0.78 +0.5
745,579 + AO353_03485 0.78 +1.1
745,579 + AO353_03485 0.78 -0.2
745,579 + AO353_03485 0.78 +0.5
745,580 - AO353_03485 0.78 +0.7
745,580 - AO353_03485 0.78 +0.4
745,580 - AO353_03485 0.78 +0.9
745,580 - AO353_03485 0.78 +0.8
745,601 + AO353_03485 0.84 -1.8
745,601 + AO353_03485 0.84 +0.5
745,601 + AO353_03485 0.84 -0.2
745,601 + AO353_03485 0.84 +0.8
745,602 - AO353_03485 0.85 +0.8
745,602 - AO353_03485 0.85 -1.2
745,602 - AO353_03485 0.85 -0.2
745,602 - AO353_03485 0.85 +1.0
745,602 - AO353_03485 0.85 +0.8
745,654 + +1.0
745,654 + +1.1
745,654 + -1.2
745,654 + +0.0
745,655 - +1.1
745,655 - -0.2
745,655 - -1.2
745,655 - +2.1
745,655 - -0.0
745,655 - -0.6
745,655 - +1.8
745,655 - -0.6
745,655 - -0.2
745,657 + -1.4
745,657 + +0.8
745,658 - -0.8
745,658 - +1.1
745,709 + +0.2
745,709 + -0.8
745,710 - -1.6
745,710 - +0.8
745,710 - -1.2
745,710 - +1.5
745,717 - +0.4
745,717 - +2.0
745,717 - -0.2
745,717 - -0.8
745,755 + +0.2
745,755 + -0.2
745,766 + +0.8
745,766 + +0.6
745,799 + -0.3
745,799 + +1.4
745,799 + +0.4
745,799 + -1.6
745,799 + +0.6
745,799 + -1.2
745,799 + -2.0
745,800 - -1.8
745,800 - +0.8
745,800 - +1.8
745,800 - +0.2
745,800 - +0.8
745,800 - -0.2
745,800 - +0.2
745,800 - -1.2
745,953 + +0.9
745,953 + -0.2
745,954 - +0.1
746,172 + AO353_03490 0.22 -0.2
746,172 + AO353_03490 0.22 -0.5
746,172 + AO353_03490 0.22 +0.5
746,172 + AO353_03490 0.22 -0.5
746,172 + AO353_03490 0.22 +1.3
746,172 + AO353_03490 0.22 +0.7
746,346 + AO353_03490 0.34 -0.4
746,346 + AO353_03490 0.34 +1.0
746,346 + AO353_03490 0.34 +0.2
746,346 + AO353_03490 0.34 +0.4
746,346 + AO353_03490 0.34 +1.4
746,346 + AO353_03490 0.34 -0.2
746,346 + AO353_03490 0.34 +0.8
746,346 + AO353_03490 0.34 +0.2
746,346 + AO353_03490 0.34 +2.0
746,346 + AO353_03490 0.34 +2.0
746,347 - AO353_03490 0.34 -1.1
746,347 - AO353_03490 0.34 +0.5
746,347 - AO353_03490 0.34 +0.2
746,347 - AO353_03490 0.34 +0.3
746,347 - AO353_03490 0.34 -1.5
746,347 - AO353_03490 0.34 +0.2
746,347 - AO353_03490 0.34 -2.0
746,347 - AO353_03490 0.34 +1.1
746,347 - AO353_03490 0.34 -0.2
746,347 - AO353_03490 0.34 -0.8
746,447 - AO353_03490 0.40 -0.8

Or see this region's nucleotide sequence