Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_02595

Experiment: Ceftazidime 0.12 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_02585 and AO353_02590 are separated by 77 nucleotidesAO353_02590 and AO353_02595 are separated by 82 nucleotidesAO353_02595 and AO353_02600 are separated by 2 nucleotidesAO353_02600 and AO353_02605 overlap by 4 nucleotides AO353_02585: AO353_02585 - MFS transporter, at 552,699 to 553,907 _02585 AO353_02590: AO353_02590 - MarR family transcriptional regulator, at 553,985 to 554,389 _02590 AO353_02595: AO353_02595 - cobalamin synthase, at 554,472 to 555,203 _02595 AO353_02600: AO353_02600 - alpha-ribazole phosphatase, at 555,206 to 555,781 _02600 AO353_02605: AO353_02605 - nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase, at 555,778 to 556,833 _02605 Position (kb) 554 555 556Strain fitness (log2 ratio) -3 -2 -1 0 1at 553.655 kb on - strand, within AO353_02585at 553.655 kb on - strand, within AO353_02585at 553.872 kb on + strandat 553.872 kb on + strandat 553.872 kb on + strandat 553.873 kb on - strandat 553.873 kb on - strandat 553.873 kb on - strandat 553.912 kb on - strandat 553.912 kb on - strandat 553.912 kb on - strandat 553.928 kb on + strandat 553.930 kb on + strandat 553.930 kb on + strandat 553.932 kb on + strandat 553.932 kb on + strandat 553.962 kb on + strandat 553.963 kb on - strandat 553.963 kb on - strandat 553.963 kb on - strandat 553.963 kb on - strandat 553.963 kb on - strandat 554.192 kb on - strand, within AO353_02590at 554.192 kb on - strand, within AO353_02590at 554.203 kb on + strand, within AO353_02590at 554.203 kb on + strand, within AO353_02590at 554.283 kb on + strand, within AO353_02590at 554.283 kb on + strand, within AO353_02590at 554.283 kb on + strand, within AO353_02590at 554.284 kb on - strand, within AO353_02590at 554.325 kb on + strand, within AO353_02590at 554.326 kb on - strand, within AO353_02590at 554.369 kb on + strandat 554.369 kb on + strandat 554.370 kb on - strandat 554.370 kb on - strandat 554.385 kb on - strandat 554.385 kb on - strandat 554.385 kb on - strandat 554.398 kb on + strandat 554.399 kb on - strandat 554.399 kb on - strandat 554.399 kb on - strandat 554.399 kb on - strandat 554.400 kb on + strandat 554.400 kb on + strandat 554.401 kb on - strandat 554.401 kb on - strandat 554.418 kb on - strandat 554.418 kb on - strandat 554.418 kb on - strandat 554.735 kb on - strand, within AO353_02595at 554.735 kb on - strand, within AO353_02595at 554.804 kb on + strand, within AO353_02595at 554.805 kb on - strand, within AO353_02595at 554.805 kb on - strand, within AO353_02595at 554.805 kb on - strand, within AO353_02595at 555.103 kb on + strand, within AO353_02595at 555.103 kb on + strand, within AO353_02595at 555.373 kb on - strand, within AO353_02600at 555.373 kb on - strand, within AO353_02600at 555.373 kb on - strand, within AO353_02600at 555.373 kb on - strand, within AO353_02600at 555.373 kb on - strand, within AO353_02600at 555.937 kb on + strand, within AO353_02605at 555.937 kb on + strand, within AO353_02605at 555.937 kb on + strand, within AO353_02605at 555.937 kb on + strand, within AO353_02605at 555.937 kb on + strand, within AO353_02605at 555.937 kb on + strand, within AO353_02605at 555.937 kb on + strand, within AO353_02605at 555.938 kb on - strand, within AO353_02605at 555.938 kb on - strand, within AO353_02605at 556.038 kb on + strand, within AO353_02605at 556.038 kb on + strand, within AO353_02605at 556.038 kb on + strand, within AO353_02605at 556.038 kb on + strand, within AO353_02605at 556.038 kb on + strand, within AO353_02605at 556.038 kb on + strand, within AO353_02605at 556.039 kb on - strand, within AO353_02605at 556.039 kb on - strand, within AO353_02605at 556.039 kb on - strand, within AO353_02605at 556.039 kb on - strand, within AO353_02605at 556.039 kb on - strand, within AO353_02605at 556.039 kb on - strand, within AO353_02605at 556.039 kb on - strand, within AO353_02605at 556.039 kb on - strand, within AO353_02605at 556.039 kb on - strand, within AO353_02605at 556.085 kb on + strand, within AO353_02605at 556.086 kb on - strand, within AO353_02605at 556.198 kb on - strand, within AO353_02605

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Per-strain Table

Position Strand Gene LocusTag Fraction Ceftazidime 0.12 mg/ml
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553,655 - AO353_02585 0.79 +1.0
553,655 - AO353_02585 0.79 +0.3
553,872 + +0.6
553,872 + +0.6
553,872 + -2.0
553,873 - +0.9
553,873 - -2.4
553,873 - -1.7
553,912 - +0.9
553,912 - -0.7
553,912 - -0.4
553,928 + -1.0
553,930 + -0.6
553,930 + +0.5
553,932 + +1.0
553,932 + -0.0
553,962 + +0.2
553,963 - +1.6
553,963 - +0.3
553,963 - -0.8
553,963 - +0.3
553,963 - -0.8
554,192 - AO353_02590 0.51 +0.6
554,192 - AO353_02590 0.51 +1.2
554,203 + AO353_02590 0.54 -0.4
554,203 + AO353_02590 0.54 -1.7
554,283 + AO353_02590 0.74 +1.0
554,283 + AO353_02590 0.74 +1.6
554,283 + AO353_02590 0.74 -1.3
554,284 - AO353_02590 0.74 +0.6
554,325 + AO353_02590 0.84 +0.3
554,326 - AO353_02590 0.84 -0.3
554,369 + +0.1
554,369 + -1.0
554,370 - -0.4
554,370 - -0.1
554,385 - -2.4
554,385 - -0.5
554,385 - -1.2
554,398 + +0.9
554,399 - -0.1
554,399 - +0.6
554,399 - -1.7
554,399 - +0.1
554,400 + -1.4
554,400 + -0.0
554,401 - +0.9
554,401 - -0.6
554,418 - -0.3
554,418 - +0.6
554,418 - +0.0
554,735 - AO353_02595 0.36 -2.4
554,735 - AO353_02595 0.36 +0.4
554,804 + AO353_02595 0.45 -0.2
554,805 - AO353_02595 0.45 -1.7
554,805 - AO353_02595 0.45 -1.6
554,805 - AO353_02595 0.45 +0.2
555,103 + AO353_02595 0.86 -0.5
555,103 + AO353_02595 0.86 -1.1
555,373 - AO353_02600 0.29 -0.3
555,373 - AO353_02600 0.29 +0.2
555,373 - AO353_02600 0.29 +0.8
555,373 - AO353_02600 0.29 +1.4
555,373 - AO353_02600 0.29 +0.6
555,937 + AO353_02605 0.15 +0.6
555,937 + AO353_02605 0.15 +1.0
555,937 + AO353_02605 0.15 +0.4
555,937 + AO353_02605 0.15 +1.0
555,937 + AO353_02605 0.15 -1.2
555,937 + AO353_02605 0.15 +1.2
555,937 + AO353_02605 0.15 -2.2
555,938 - AO353_02605 0.15 +0.2
555,938 - AO353_02605 0.15 +1.0
556,038 + AO353_02605 0.25 +0.4
556,038 + AO353_02605 0.25 +0.4
556,038 + AO353_02605 0.25 -2.8
556,038 + AO353_02605 0.25 +0.5
556,038 + AO353_02605 0.25 +0.4
556,038 + AO353_02605 0.25 +1.6
556,039 - AO353_02605 0.25 -0.5
556,039 - AO353_02605 0.25 +1.6
556,039 - AO353_02605 0.25 +0.6
556,039 - AO353_02605 0.25 +0.6
556,039 - AO353_02605 0.25 +1.6
556,039 - AO353_02605 0.25 +0.0
556,039 - AO353_02605 0.25 +0.4
556,039 - AO353_02605 0.25 +0.3
556,039 - AO353_02605 0.25 -0.4
556,085 + AO353_02605 0.29 -1.2
556,086 - AO353_02605 0.29 -0.1
556,198 - AO353_02605 0.40 +0.0

Or see this region's nucleotide sequence