Experiment: Ceftazidime 0.12 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_02520 and AO353_02525 are separated by 118 nucleotides AO353_02525 and AO353_02530 are separated by 91 nucleotides AO353_02530 and AO353_02535 are separated by 84 nucleotides
AO353_02520: AO353_02520 - sodium transporter, at 536,655 to 537,620
_02520
AO353_02525: AO353_02525 - molecular chaperone, at 537,739 to 538,059
_02525
AO353_02530: AO353_02530 - glycerol acyltransferase, at 538,151 to 540,025
_02530
AO353_02535: AO353_02535 - C4-dicarboxylate ABC transporter, at 540,110 to 541,261
_02535
Position (kb) 538
539
540
541 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 537.351 kb on - strand, within AO353_02520 at 537.351 kb on - strand, within AO353_02520 at 537.351 kb on - strand, within AO353_02520 at 537.375 kb on + strand, within AO353_02520 at 537.375 kb on + strand, within AO353_02520 at 537.558 kb on + strand at 537.558 kb on + strand at 537.558 kb on + strand at 537.559 kb on - strand at 537.559 kb on - strand at 537.559 kb on - strand at 537.559 kb on - strand at 537.559 kb on - strand at 537.559 kb on - strand at 537.559 kb on - strand at 537.626 kb on + strand at 537.646 kb on + strand at 537.647 kb on - strand at 537.656 kb on + strand at 537.656 kb on + strand at 537.656 kb on + strand at 537.656 kb on + strand at 537.658 kb on + strand at 537.658 kb on + strand at 537.658 kb on + strand at 537.659 kb on - strand at 537.659 kb on - strand at 537.659 kb on - strand at 537.659 kb on - strand at 537.698 kb on + strand at 537.698 kb on + strand at 537.698 kb on + strand at 537.699 kb on - strand at 537.699 kb on - strand at 537.701 kb on + strand at 537.701 kb on + strand at 537.701 kb on + strand at 537.701 kb on + strand at 537.701 kb on + strand at 537.701 kb on + strand at 537.702 kb on - strand at 537.702 kb on - strand at 537.702 kb on - strand at 537.702 kb on - strand at 537.702 kb on - strand at 537.702 kb on - strand at 537.802 kb on + strand, within AO353_02525 at 537.802 kb on + strand, within AO353_02525 at 537.803 kb on - strand, within AO353_02525 at 537.803 kb on - strand, within AO353_02525 at 537.803 kb on - strand, within AO353_02525 at 537.803 kb on - strand, within AO353_02525 at 537.803 kb on - strand, within AO353_02525 at 537.804 kb on + strand, within AO353_02525 at 537.804 kb on + strand, within AO353_02525 at 537.805 kb on - strand, within AO353_02525 at 537.805 kb on - strand, within AO353_02525 at 537.858 kb on - strand, within AO353_02525 at 537.858 kb on - strand, within AO353_02525 at 537.914 kb on - strand, within AO353_02525 at 537.914 kb on - strand, within AO353_02525 at 538.057 kb on + strand at 538.057 kb on + strand at 538.057 kb on + strand at 538.058 kb on - strand at 538.058 kb on - strand at 538.088 kb on - strand at 538.093 kb on + strand at 538.093 kb on + strand at 538.093 kb on + strand at 538.093 kb on + strand at 538.093 kb on + strand at 538.094 kb on - strand at 538.094 kb on - strand at 538.100 kb on + strand at 538.101 kb on - strand at 538.101 kb on - strand at 538.109 kb on - strand at 538.152 kb on + strand at 538.152 kb on + strand at 538.152 kb on + strand at 538.152 kb on + strand at 538.153 kb on - strand at 538.153 kb on - strand at 538.153 kb on - strand at 538.153 kb on - strand at 538.156 kb on + strand at 538.156 kb on + strand at 538.156 kb on + strand at 538.157 kb on - strand at 538.449 kb on + strand, within AO353_02530 at 538.449 kb on + strand, within AO353_02530 at 538.450 kb on - strand, within AO353_02530 at 538.558 kb on + strand, within AO353_02530 at 538.559 kb on - strand, within AO353_02530 at 538.559 kb on - strand at 538.559 kb on - strand, within AO353_02530 at 538.559 kb on - strand, within AO353_02530 at 538.559 kb on - strand, within AO353_02530 at 538.559 kb on - strand, within AO353_02530 at 538.559 kb on - strand, within AO353_02530 at 538.560 kb on + strand, within AO353_02530 at 538.560 kb on + strand, within AO353_02530 at 538.560 kb on + strand, within AO353_02530 at 538.560 kb on + strand, within AO353_02530 at 538.560 kb on + strand, within AO353_02530 at 538.560 kb on + strand, within AO353_02530 at 538.560 kb on + strand, within AO353_02530 at 538.560 kb on + strand, within AO353_02530 at 538.561 kb on - strand, within AO353_02530 at 538.561 kb on - strand, within AO353_02530 at 538.561 kb on - strand, within AO353_02530 at 538.561 kb on - strand, within AO353_02530 at 538.561 kb on - strand, within AO353_02530 at 538.561 kb on - strand, within AO353_02530 at 538.561 kb on - strand, within AO353_02530 at 538.561 kb on - strand, within AO353_02530 at 538.561 kb on - strand, within AO353_02530 at 538.561 kb on - strand, within AO353_02530 at 538.569 kb on + strand, within AO353_02530 at 538.569 kb on + strand, within AO353_02530 at 538.569 kb on + strand, within AO353_02530 at 538.569 kb on + strand, within AO353_02530 at 538.569 kb on + strand, within AO353_02530 at 538.569 kb on + strand, within AO353_02530 at 538.569 kb on + strand, within AO353_02530 at 538.569 kb on + strand, within AO353_02530 at 538.569 kb on + strand, within AO353_02530 at 538.569 kb on + strand, within AO353_02530 at 538.570 kb on - strand, within AO353_02530 at 538.570 kb on - strand, within AO353_02530 at 538.570 kb on - strand, within AO353_02530 at 538.570 kb on - strand, within AO353_02530 at 538.570 kb on - strand, within AO353_02530 at 538.572 kb on + strand, within AO353_02530 at 538.572 kb on + strand, within AO353_02530 at 538.572 kb on + strand, within AO353_02530 at 538.572 kb on + strand, within AO353_02530 at 538.572 kb on + strand, within AO353_02530 at 538.572 kb on + strand, within AO353_02530 at 538.572 kb on + strand, within AO353_02530 at 538.572 kb on + strand, within AO353_02530 at 538.572 kb on + strand, within AO353_02530 at 538.572 kb on + strand, within AO353_02530 at 538.573 kb on - strand, within AO353_02530 at 538.573 kb on - strand, within AO353_02530 at 538.573 kb on - strand, within AO353_02530 at 538.704 kb on + strand, within AO353_02530 at 538.704 kb on + strand at 538.704 kb on + strand, within AO353_02530 at 538.705 kb on - strand, within AO353_02530 at 538.770 kb on + strand, within AO353_02530 at 538.771 kb on - strand, within AO353_02530 at 538.771 kb on - strand, within AO353_02530 at 538.771 kb on - strand, within AO353_02530 at 538.771 kb on - strand, within AO353_02530 at 538.771 kb on - strand, within AO353_02530 at 538.771 kb on - strand, within AO353_02530 at 538.771 kb on - strand, within AO353_02530 at 538.771 kb on - strand, within AO353_02530 at 538.778 kb on + strand, within AO353_02530 at 538.778 kb on + strand, within AO353_02530 at 538.778 kb on + strand, within AO353_02530 at 538.778 kb on + strand, within AO353_02530 at 538.779 kb on - strand, within AO353_02530 at 538.779 kb on - strand, within AO353_02530 at 538.779 kb on - strand, within AO353_02530 at 538.779 kb on - strand at 538.779 kb on - strand, within AO353_02530 at 538.779 kb on - strand, within AO353_02530 at 538.956 kb on + strand, within AO353_02530 at 538.957 kb on - strand, within AO353_02530 at 538.957 kb on - strand, within AO353_02530 at 538.957 kb on - strand, within AO353_02530 at 538.971 kb on + strand, within AO353_02530 at 538.971 kb on + strand, within AO353_02530 at 539.289 kb on + strand, within AO353_02530 at 539.290 kb on - strand, within AO353_02530 at 539.290 kb on - strand, within AO353_02530 at 539.290 kb on - strand, within AO353_02530 at 539.396 kb on - strand, within AO353_02530 at 539.396 kb on - strand, within AO353_02530 at 539.396 kb on - strand, within AO353_02530 at 539.411 kb on + strand, within AO353_02530 at 539.411 kb on + strand, within AO353_02530 at 539.411 kb on + strand, within AO353_02530 at 539.411 kb on + strand, within AO353_02530 at 539.412 kb on - strand, within AO353_02530 at 539.412 kb on - strand, within AO353_02530 at 539.412 kb on - strand, within AO353_02530 at 539.461 kb on - strand, within AO353_02530 at 539.509 kb on - strand, within AO353_02530 at 539.637 kb on + strand, within AO353_02530 at 539.637 kb on + strand, within AO353_02530 at 539.638 kb on - strand, within AO353_02530 at 539.638 kb on - strand, within AO353_02530 at 539.638 kb on - strand, within AO353_02530 at 539.901 kb on + strand at 539.902 kb on - strand at 539.966 kb on - strand at 540.057 kb on + strand at 540.057 kb on + strand at 540.057 kb on + strand at 540.058 kb on - strand at 540.058 kb on - strand at 540.058 kb on - strand at 540.058 kb on - strand at 540.070 kb on + strand at 540.093 kb on + strand at 540.093 kb on + strand at 540.093 kb on + strand at 540.094 kb on - strand at 540.094 kb on - strand at 540.094 kb on - strand at 540.094 kb on - strand at 540.097 kb on + strand at 540.097 kb on + strand at 540.098 kb on - strand at 540.098 kb on - strand at 540.111 kb on + strand at 540.111 kb on + strand at 540.112 kb on - strand at 540.112 kb on - strand at 540.112 kb on - strand at 540.120 kb on - strand at 540.288 kb on + strand, within AO353_02535 at 540.307 kb on + strand, within AO353_02535 at 540.307 kb on + strand, within AO353_02535 at 540.307 kb on + strand, within AO353_02535 at 540.307 kb on + strand, within AO353_02535 at 540.307 kb on + strand, within AO353_02535 at 540.308 kb on - strand, within AO353_02535 at 540.308 kb on - strand, within AO353_02535 at 540.308 kb on - strand, within AO353_02535 at 540.308 kb on - strand, within AO353_02535 at 540.308 kb on - strand, within AO353_02535 at 540.308 kb on - strand, within AO353_02535 at 540.409 kb on + strand, within AO353_02535 at 540.409 kb on + strand, within AO353_02535 at 540.409 kb on + strand, within AO353_02535 at 540.409 kb on + strand, within AO353_02535 at 540.409 kb on + strand, within AO353_02535 at 540.409 kb on + strand, within AO353_02535 at 540.409 kb on + strand, within AO353_02535 at 540.409 kb on + strand, within AO353_02535 at 540.410 kb on - strand, within AO353_02535 at 540.410 kb on - strand, within AO353_02535 at 540.410 kb on - strand, within AO353_02535 at 540.410 kb on - strand, within AO353_02535 at 540.410 kb on - strand, within AO353_02535 at 540.592 kb on + strand, within AO353_02535 at 540.599 kb on + strand, within AO353_02535 at 540.599 kb on + strand at 540.599 kb on + strand, within AO353_02535 at 540.600 kb on - strand, within AO353_02535 at 540.654 kb on + strand, within AO353_02535 at 540.654 kb on + strand, within AO353_02535 at 540.654 kb on + strand, within AO353_02535 at 540.654 kb on + strand, within AO353_02535 at 540.654 kb on + strand, within AO353_02535 at 540.654 kb on + strand, within AO353_02535 at 540.654 kb on + strand, within AO353_02535 at 540.654 kb on + strand, within AO353_02535 at 540.654 kb on + strand, within AO353_02535 at 540.654 kb on + strand, within AO353_02535 at 540.655 kb on - strand, within AO353_02535 at 540.655 kb on - strand, within AO353_02535 at 540.655 kb on - strand, within AO353_02535 at 540.655 kb on - strand, within AO353_02535 at 540.810 kb on + strand, within AO353_02535 at 540.811 kb on - strand, within AO353_02535 at 540.811 kb on - strand at 540.811 kb on - strand, within AO353_02535 at 540.811 kb on - strand, within AO353_02535
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 0.12 mg/ml remove 537,351 - AO353_02520 0.72 -0.8 537,351 - AO353_02520 0.72 -1.7 537,351 - AO353_02520 0.72 -0.8 537,375 + AO353_02520 0.75 +0.5 537,375 + AO353_02520 0.75 +1.5 537,558 + +1.0 537,558 + -1.0 537,558 + -1.1 537,559 - -0.2 537,559 - -0.0 537,559 - +1.0 537,559 - -0.4 537,559 - -1.0 537,559 - -1.7 537,559 - -2.0 537,626 + -0.4 537,646 + +0.0 537,647 - +0.0 537,656 + -0.0 537,656 + -1.0 537,656 + +0.4 537,656 + -1.2 537,658 + +0.2 537,658 + -0.4 537,658 + -2.0 537,659 - +1.6 537,659 - +2.6 537,659 - -0.1 537,659 - -0.4 537,698 + +0.1 537,698 + -0.4 537,698 + -1.0 537,699 - -0.7 537,699 - +0.5 537,701 + -0.4 537,701 + +0.0 537,701 + +0.4 537,701 + +0.4 537,701 + +1.6 537,701 + +1.1 537,702 - -0.8 537,702 - +1.3 537,702 - +1.1 537,702 - -0.6 537,702 - -0.6 537,702 - -2.0 537,802 + AO353_02525 0.20 -1.0 537,802 + AO353_02525 0.20 -0.7 537,803 - AO353_02525 0.20 -0.1 537,803 - AO353_02525 0.20 -0.3 537,803 - AO353_02525 0.20 -2.1 537,803 - AO353_02525 0.20 +1.2 537,803 - AO353_02525 0.20 -0.2 537,804 + AO353_02525 0.20 +0.3 537,804 + AO353_02525 0.20 +0.3 537,805 - AO353_02525 0.21 -1.2 537,805 - AO353_02525 0.21 -0.2 537,858 - AO353_02525 0.37 -0.2 537,858 - AO353_02525 0.37 +0.0 537,914 - AO353_02525 0.55 +1.1 537,914 - AO353_02525 0.55 -1.2 538,057 + +1.6 538,057 + +0.4 538,057 + -1.0 538,058 - +0.3 538,058 - +0.3 538,088 - -1.4 538,093 + -0.2 538,093 + +0.3 538,093 + +1.0 538,093 + +0.0 538,093 + -0.4 538,094 - +0.1 538,094 - -0.3 538,100 + -0.2 538,101 - -1.4 538,101 - +1.0 538,109 - +1.3 538,152 + -0.4 538,152 + +0.4 538,152 + +2.4 538,152 + -0.5 538,153 - +1.9 538,153 - +0.3 538,153 - -0.7 538,153 - -0.7 538,156 + +0.8 538,156 + +0.6 538,156 + +1.0 538,157 - -1.4 538,449 + AO353_02530 0.16 -2.9 538,449 + AO353_02530 0.16 -0.5 538,450 - AO353_02530 0.16 +0.6 538,558 + AO353_02530 0.22 +0.4 538,559 - AO353_02530 0.22 -0.2 538,559 - -1.4 538,559 - AO353_02530 0.22 +0.3 538,559 - AO353_02530 0.22 -1.4 538,559 - AO353_02530 0.22 -0.5 538,559 - AO353_02530 0.22 +0.0 538,559 - AO353_02530 0.22 -0.8 538,560 + AO353_02530 0.22 +0.2 538,560 + AO353_02530 0.22 -0.3 538,560 + AO353_02530 0.22 +1.1 538,560 + AO353_02530 0.22 +0.3 538,560 + AO353_02530 0.22 -1.4 538,560 + AO353_02530 0.22 -1.3 538,560 + AO353_02530 0.22 +0.0 538,560 + AO353_02530 0.22 -0.6 538,561 - AO353_02530 0.22 -0.4 538,561 - AO353_02530 0.22 -2.4 538,561 - AO353_02530 0.22 +0.6 538,561 - AO353_02530 0.22 +0.6 538,561 - AO353_02530 0.22 +1.6 538,561 - AO353_02530 0.22 -1.1 538,561 - AO353_02530 0.22 -0.8 538,561 - AO353_02530 0.22 -1.7 538,561 - AO353_02530 0.22 +0.3 538,561 - AO353_02530 0.22 +0.2 538,569 + AO353_02530 0.22 +1.6 538,569 + AO353_02530 0.22 -0.2 538,569 + AO353_02530 0.22 -0.8 538,569 + AO353_02530 0.22 +0.2 538,569 + AO353_02530 0.22 +0.6 538,569 + AO353_02530 0.22 -0.4 538,569 + AO353_02530 0.22 -0.4 538,569 + AO353_02530 0.22 +0.4 538,569 + AO353_02530 0.22 -0.4 538,569 + AO353_02530 0.22 +1.3 538,570 - AO353_02530 0.22 -0.7 538,570 - AO353_02530 0.22 -2.4 538,570 - AO353_02530 0.22 +0.4 538,570 - AO353_02530 0.22 +0.2 538,570 - AO353_02530 0.22 +1.2 538,572 + AO353_02530 0.22 -1.0 538,572 + AO353_02530 0.22 +0.6 538,572 + AO353_02530 0.22 +0.2 538,572 + AO353_02530 0.22 -0.6 538,572 + AO353_02530 0.22 -2.0 538,572 + AO353_02530 0.22 -0.4 538,572 + AO353_02530 0.22 -0.1 538,572 + AO353_02530 0.22 -1.5 538,572 + AO353_02530 0.22 +0.3 538,572 + AO353_02530 0.22 +0.6 538,573 - AO353_02530 0.23 +0.5 538,573 - AO353_02530 0.23 +1.5 538,573 - AO353_02530 0.23 +0.6 538,704 + AO353_02530 0.29 -3.1 538,704 + -0.4 538,704 + AO353_02530 0.29 -0.6 538,705 - AO353_02530 0.30 -0.2 538,770 + AO353_02530 0.33 -0.7 538,771 - AO353_02530 0.33 -1.2 538,771 - AO353_02530 0.33 +0.0 538,771 - AO353_02530 0.33 +1.8 538,771 - AO353_02530 0.33 -0.6 538,771 - AO353_02530 0.33 -1.4 538,771 - AO353_02530 0.33 -0.9 538,771 - AO353_02530 0.33 -0.7 538,771 - AO353_02530 0.33 -0.4 538,778 + AO353_02530 0.33 -1.0 538,778 + AO353_02530 0.33 -0.0 538,778 + AO353_02530 0.33 +0.2 538,778 + AO353_02530 0.33 +0.6 538,779 - AO353_02530 0.33 -1.6 538,779 - AO353_02530 0.33 +1.2 538,779 - AO353_02530 0.33 +0.9 538,779 - +0.6 538,779 - AO353_02530 0.33 +0.0 538,779 - AO353_02530 0.33 -0.2 538,956 + AO353_02530 0.43 -2.2 538,957 - AO353_02530 0.43 +1.6 538,957 - AO353_02530 0.43 -1.2 538,957 - AO353_02530 0.43 -1.2 538,971 + AO353_02530 0.44 -0.8 538,971 + AO353_02530 0.44 +1.1 539,289 + AO353_02530 0.61 +2.1 539,290 - AO353_02530 0.61 -0.5 539,290 - AO353_02530 0.61 +0.6 539,290 - AO353_02530 0.61 -0.2 539,396 - AO353_02530 0.66 +1.8 539,396 - AO353_02530 0.66 -0.1 539,396 - AO353_02530 0.66 +0.3 539,411 + AO353_02530 0.67 -1.1 539,411 + AO353_02530 0.67 -0.6 539,411 + AO353_02530 0.67 -0.2 539,411 + AO353_02530 0.67 +0.6 539,412 - AO353_02530 0.67 -0.8 539,412 - AO353_02530 0.67 +0.8 539,412 - AO353_02530 0.67 -1.6 539,461 - AO353_02530 0.70 -1.7 539,509 - AO353_02530 0.72 -0.2 539,637 + AO353_02530 0.79 -1.0 539,637 + AO353_02530 0.79 +0.2 539,638 - AO353_02530 0.79 +0.6 539,638 - AO353_02530 0.79 +0.0 539,638 - AO353_02530 0.79 +0.6 539,901 + +0.3 539,902 - +0.2 539,966 - +0.1 540,057 + -0.5 540,057 + +0.2 540,057 + -1.7 540,058 - -0.0 540,058 - -1.4 540,058 - -1.4 540,058 - -0.1 540,070 + -0.1 540,093 + +0.4 540,093 + -2.4 540,093 + -0.4 540,094 - +0.1 540,094 - +1.0 540,094 - +0.8 540,094 - -0.1 540,097 + +0.2 540,097 + -1.7 540,098 - +1.6 540,098 - +0.6 540,111 + -0.5 540,111 + -1.4 540,112 - +0.3 540,112 - +0.5 540,112 - +0.1 540,120 - -0.7 540,288 + AO353_02535 0.15 -0.9 540,307 + AO353_02535 0.17 +1.0 540,307 + AO353_02535 0.17 +0.0 540,307 + AO353_02535 0.17 +0.0 540,307 + AO353_02535 0.17 +0.2 540,307 + AO353_02535 0.17 +0.6 540,308 - AO353_02535 0.17 -0.6 540,308 - AO353_02535 0.17 +0.0 540,308 - AO353_02535 0.17 +2.9 540,308 - AO353_02535 0.17 +0.2 540,308 - AO353_02535 0.17 -0.4 540,308 - AO353_02535 0.17 +0.6 540,409 + AO353_02535 0.26 -0.9 540,409 + AO353_02535 0.26 +0.3 540,409 + AO353_02535 0.26 -0.1 540,409 + AO353_02535 0.26 +0.2 540,409 + AO353_02535 0.26 -0.7 540,409 + AO353_02535 0.26 +1.3 540,409 + AO353_02535 0.26 -1.2 540,409 + AO353_02535 0.26 -1.2 540,410 - AO353_02535 0.26 -1.0 540,410 - AO353_02535 0.26 -0.7 540,410 - AO353_02535 0.26 -0.4 540,410 - AO353_02535 0.26 -0.6 540,410 - AO353_02535 0.26 -0.4 540,592 + AO353_02535 0.42 -1.0 540,599 + AO353_02535 0.42 +1.0 540,599 + -1.0 540,599 + AO353_02535 0.42 +0.4 540,600 - AO353_02535 0.43 -0.7 540,654 + AO353_02535 0.47 +0.4 540,654 + AO353_02535 0.47 +0.0 540,654 + AO353_02535 0.47 +2.4 540,654 + AO353_02535 0.47 -0.2 540,654 + AO353_02535 0.47 -0.2 540,654 + AO353_02535 0.47 +0.0 540,654 + AO353_02535 0.47 -1.0 540,654 + AO353_02535 0.47 +2.6 540,654 + AO353_02535 0.47 -1.4 540,654 + AO353_02535 0.47 +1.5 540,655 - AO353_02535 0.47 +0.1 540,655 - AO353_02535 0.47 -0.3 540,655 - AO353_02535 0.47 -0.3 540,655 - AO353_02535 0.47 -0.7 540,810 + AO353_02535 0.61 -1.7 540,811 - AO353_02535 0.61 +0.6 540,811 - -1.4 540,811 - AO353_02535 0.61 -0.3 540,811 - AO353_02535 0.61 +1.6
Or see this region's nucleotide sequence