Experiment: Ceftazidime 0.12 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_00755 and AO353_00760 are separated by 212 nucleotides AO353_00760 and AO353_00765 are separated by 234 nucleotides AO353_00765 and AO353_00770 are separated by 166 nucleotides
AO353_00755: AO353_00755 - hypothetical protein, at 166,328 to 167,521
_00755
AO353_00760: AO353_00760 - hypothetical protein, at 167,734 to 168,078
_00760
AO353_00765: AO353_00765 - D-alanyl-D-alanine carboxypeptidase, at 168,313 to 169,773
_00765
AO353_00770: AO353_00770 - nucleotide cyclase, at 169,940 to 172,339
_00770
Position (kb) 168
169
170 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 167.337 kb on + strand, within AO353_00755 at 167.361 kb on + strand, within AO353_00755 at 167.362 kb on - strand, within AO353_00755 at 167.362 kb on - strand, within AO353_00755 at 167.371 kb on + strand, within AO353_00755 at 167.413 kb on + strand at 167.413 kb on + strand at 167.413 kb on + strand at 167.414 kb on - strand at 167.414 kb on - strand at 167.414 kb on - strand at 167.414 kb on - strand at 167.485 kb on + strand at 167.485 kb on + strand at 167.485 kb on + strand at 167.485 kb on + strand at 167.485 kb on + strand at 167.485 kb on + strand at 167.485 kb on + strand at 167.486 kb on - strand at 167.486 kb on - strand at 167.486 kb on - strand at 167.486 kb on - strand at 167.519 kb on + strand at 167.520 kb on - strand at 167.578 kb on + strand at 167.578 kb on + strand at 167.578 kb on + strand at 167.578 kb on + strand at 167.578 kb on + strand at 167.578 kb on + strand at 167.578 kb on + strand at 167.578 kb on + strand at 167.578 kb on + strand at 167.578 kb on + strand at 167.578 kb on + strand at 167.578 kb on + strand at 167.579 kb on - strand at 167.579 kb on - strand at 167.579 kb on - strand at 167.579 kb on - strand at 167.579 kb on - strand at 167.579 kb on - strand at 167.586 kb on + strand at 167.586 kb on + strand at 167.587 kb on - strand at 167.587 kb on - strand at 167.587 kb on - strand at 167.587 kb on - strand at 167.587 kb on - strand at 167.663 kb on + strand at 167.794 kb on + strand, within AO353_00760 at 167.794 kb on + strand, within AO353_00760 at 167.794 kb on + strand, within AO353_00760 at 167.794 kb on + strand, within AO353_00760 at 167.794 kb on + strand, within AO353_00760 at 167.795 kb on - strand, within AO353_00760 at 167.795 kb on - strand, within AO353_00760 at 167.892 kb on - strand, within AO353_00760 at 168.070 kb on - strand at 168.097 kb on + strand at 168.098 kb on - strand at 168.115 kb on + strand at 168.115 kb on + strand at 168.124 kb on - strand at 168.124 kb on - strand at 168.124 kb on - strand at 168.228 kb on + strand at 168.262 kb on + strand at 168.262 kb on + strand at 168.263 kb on - strand at 168.263 kb on - strand at 168.297 kb on + strand at 168.305 kb on + strand at 168.305 kb on + strand at 168.456 kb on - strand at 168.552 kb on + strand, within AO353_00765 at 168.552 kb on + strand, within AO353_00765 at 168.553 kb on - strand, within AO353_00765 at 168.553 kb on - strand, within AO353_00765 at 168.556 kb on + strand, within AO353_00765 at 168.557 kb on - strand, within AO353_00765 at 168.607 kb on + strand, within AO353_00765 at 168.607 kb on + strand, within AO353_00765 at 168.652 kb on + strand, within AO353_00765 at 168.652 kb on + strand, within AO353_00765 at 168.652 kb on + strand, within AO353_00765 at 168.811 kb on - strand, within AO353_00765 at 168.881 kb on + strand, within AO353_00765 at 168.882 kb on - strand, within AO353_00765 at 168.882 kb on - strand, within AO353_00765 at 168.882 kb on - strand, within AO353_00765 at 168.882 kb on - strand, within AO353_00765 at 168.936 kb on + strand, within AO353_00765 at 168.936 kb on + strand, within AO353_00765 at 168.997 kb on + strand, within AO353_00765 at 168.998 kb on - strand, within AO353_00765 at 168.998 kb on - strand, within AO353_00765 at 168.998 kb on - strand, within AO353_00765 at 169.078 kb on + strand, within AO353_00765 at 169.078 kb on + strand, within AO353_00765 at 169.078 kb on + strand, within AO353_00765 at 169.078 kb on + strand, within AO353_00765 at 169.078 kb on + strand, within AO353_00765 at 169.079 kb on - strand, within AO353_00765 at 169.079 kb on - strand, within AO353_00765 at 169.105 kb on + strand, within AO353_00765 at 169.105 kb on + strand, within AO353_00765 at 169.105 kb on + strand, within AO353_00765 at 169.105 kb on + strand, within AO353_00765 at 169.106 kb on - strand, within AO353_00765 at 169.106 kb on - strand, within AO353_00765 at 169.106 kb on - strand, within AO353_00765 at 169.106 kb on - strand, within AO353_00765 at 169.106 kb on - strand, within AO353_00765 at 169.199 kb on + strand, within AO353_00765 at 169.200 kb on - strand, within AO353_00765 at 169.255 kb on + strand, within AO353_00765 at 169.255 kb on + strand, within AO353_00765 at 169.255 kb on + strand at 169.255 kb on + strand, within AO353_00765 at 169.255 kb on + strand, within AO353_00765 at 169.255 kb on + strand, within AO353_00765 at 169.255 kb on + strand, within AO353_00765 at 169.255 kb on + strand, within AO353_00765 at 169.255 kb on + strand, within AO353_00765 at 169.256 kb on - strand, within AO353_00765 at 169.256 kb on - strand, within AO353_00765 at 169.256 kb on - strand, within AO353_00765 at 169.256 kb on - strand, within AO353_00765 at 169.260 kb on + strand, within AO353_00765 at 169.260 kb on + strand, within AO353_00765 at 169.261 kb on - strand, within AO353_00765 at 169.306 kb on + strand, within AO353_00765 at 169.307 kb on - strand, within AO353_00765 at 169.307 kb on - strand, within AO353_00765 at 169.352 kb on + strand, within AO353_00765 at 169.701 kb on + strand at 169.702 kb on - strand at 169.776 kb on + strand at 169.776 kb on + strand at 169.776 kb on + strand at 169.777 kb on - strand at 169.777 kb on - strand at 169.852 kb on + strand at 169.852 kb on + strand at 169.852 kb on + strand at 169.852 kb on + strand at 169.852 kb on + strand at 169.853 kb on - strand at 169.853 kb on - strand at 169.853 kb on - strand at 169.853 kb on - strand at 170.095 kb on + strand at 170.095 kb on + strand at 170.095 kb on + strand at 170.095 kb on + strand at 170.095 kb on + strand at 170.095 kb on + strand at 170.096 kb on - strand at 170.096 kb on - strand at 170.114 kb on + strand at 170.114 kb on + strand at 170.115 kb on - strand at 170.115 kb on - strand at 170.131 kb on + strand at 170.131 kb on + strand at 170.131 kb on + strand at 170.132 kb on - strand at 170.132 kb on - strand at 170.132 kb on - strand at 170.132 kb on - strand at 170.132 kb on - strand at 170.132 kb on - strand at 170.274 kb on + strand, within AO353_00770 at 170.274 kb on + strand, within AO353_00770 at 170.275 kb on - strand, within AO353_00770 at 170.275 kb on - strand, within AO353_00770 at 170.275 kb on - strand, within AO353_00770 at 170.382 kb on + strand, within AO353_00770 at 170.383 kb on - strand, within AO353_00770 at 170.464 kb on + strand, within AO353_00770 at 170.475 kb on + strand, within AO353_00770 at 170.475 kb on + strand, within AO353_00770 at 170.475 kb on + strand, within AO353_00770 at 170.475 kb on + strand, within AO353_00770 at 170.476 kb on - strand, within AO353_00770 at 170.659 kb on + strand, within AO353_00770 at 170.659 kb on + strand, within AO353_00770 at 170.660 kb on - strand, within AO353_00770 at 170.660 kb on - strand, within AO353_00770 at 170.681 kb on + strand, within AO353_00770 at 170.681 kb on + strand, within AO353_00770 at 170.701 kb on - strand, within AO353_00770 at 170.701 kb on - strand, within AO353_00770 at 170.701 kb on - strand, within AO353_00770 at 170.727 kb on + strand, within AO353_00770 at 170.727 kb on + strand, within AO353_00770 at 170.727 kb on + strand, within AO353_00770 at 170.727 kb on + strand, within AO353_00770 at 170.727 kb on + strand, within AO353_00770 at 170.727 kb on + strand, within AO353_00770 at 170.728 kb on - strand, within AO353_00770 at 170.728 kb on - strand, within AO353_00770 at 170.728 kb on - strand, within AO353_00770 at 170.728 kb on - strand, within AO353_00770 at 170.728 kb on - strand, within AO353_00770 at 170.728 kb on - strand, within AO353_00770 at 170.728 kb on - strand, within AO353_00770 at 170.728 kb on - strand, within AO353_00770 at 170.769 kb on + strand, within AO353_00770 at 170.769 kb on + strand, within AO353_00770 at 170.769 kb on + strand, within AO353_00770 at 170.769 kb on + strand, within AO353_00770 at 170.769 kb on + strand, within AO353_00770 at 170.770 kb on - strand, within AO353_00770
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 0.12 mg/ml remove 167,337 + AO353_00755 0.85 -0.4 167,361 + AO353_00755 0.87 +1.1 167,362 - AO353_00755 0.87 +0.5 167,362 - AO353_00755 0.87 -0.5 167,371 + AO353_00755 0.87 +0.5 167,413 + +0.8 167,413 + -0.5 167,413 + +0.9 167,414 - +1.5 167,414 - -0.6 167,414 - +0.0 167,414 - +0.9 167,485 + +0.7 167,485 + -0.7 167,485 + +0.9 167,485 + +1.9 167,485 + -0.8 167,485 + -2.5 167,485 + +2.1 167,486 - -0.5 167,486 - -2.3 167,486 - -0.9 167,486 - -0.5 167,519 + +1.2 167,520 - -2.5 167,578 + +0.5 167,578 + +1.1 167,578 + +0.7 167,578 + -1.6 167,578 + -0.1 167,578 + +0.5 167,578 + +0.2 167,578 + +0.9 167,578 + +0.7 167,578 + -0.2 167,578 + +1.5 167,578 + -0.6 167,579 - +0.7 167,579 - -0.8 167,579 - +0.5 167,579 - +1.9 167,579 - -1.5 167,579 - -1.0 167,586 + -1.5 167,586 + -1.5 167,587 - -2.9 167,587 - +0.2 167,587 - +0.2 167,587 - -2.1 167,587 - +0.0 167,663 + +0.8 167,794 + AO353_00760 0.17 -0.5 167,794 + AO353_00760 0.17 -2.0 167,794 + AO353_00760 0.17 -1.8 167,794 + AO353_00760 0.17 -1.1 167,794 + AO353_00760 0.17 +0.9 167,795 - AO353_00760 0.18 -1.1 167,795 - AO353_00760 0.18 -0.1 167,892 - AO353_00760 0.46 -1.8 168,070 - +0.5 168,097 + +1.4 168,098 - -0.7 168,115 + +0.7 168,115 + -0.8 168,124 - +0.2 168,124 - +0.1 168,124 - -0.5 168,228 + -0.5 168,262 + +0.3 168,262 + +1.1 168,263 - -2.1 168,263 - -1.8 168,297 + +1.7 168,305 + +2.1 168,305 + -0.1 168,456 - -3.5 168,552 + AO353_00765 0.16 -1.1 168,552 + AO353_00765 0.16 +0.1 168,553 - AO353_00765 0.16 -1.1 168,553 - AO353_00765 0.16 -1.8 168,556 + AO353_00765 0.17 -0.6 168,557 - AO353_00765 0.17 -0.8 168,607 + AO353_00765 0.20 -4.1 168,607 + AO353_00765 0.20 -1.1 168,652 + AO353_00765 0.23 -2.2 168,652 + AO353_00765 0.23 -1.0 168,652 + AO353_00765 0.23 +0.5 168,811 - AO353_00765 0.34 -2.6 168,881 + AO353_00765 0.39 -1.8 168,882 - AO353_00765 0.39 +0.1 168,882 - AO353_00765 0.39 +0.5 168,882 - AO353_00765 0.39 -3.6 168,882 - AO353_00765 0.39 -1.1 168,936 + AO353_00765 0.43 -2.7 168,936 + AO353_00765 0.43 -2.1 168,997 + AO353_00765 0.47 -1.3 168,998 - AO353_00765 0.47 -2.3 168,998 - AO353_00765 0.47 -0.5 168,998 - AO353_00765 0.47 -1.5 169,078 + AO353_00765 0.52 -1.5 169,078 + AO353_00765 0.52 -1.1 169,078 + AO353_00765 0.52 -2.6 169,078 + AO353_00765 0.52 -1.3 169,078 + AO353_00765 0.52 -1.8 169,079 - AO353_00765 0.52 -2.1 169,079 - AO353_00765 0.52 -1.1 169,105 + AO353_00765 0.54 -0.1 169,105 + AO353_00765 0.54 -0.8 169,105 + AO353_00765 0.54 -2.3 169,105 + AO353_00765 0.54 -2.6 169,106 - AO353_00765 0.54 -2.5 169,106 - AO353_00765 0.54 -0.9 169,106 - AO353_00765 0.54 -1.7 169,106 - AO353_00765 0.54 -1.5 169,106 - AO353_00765 0.54 -1.1 169,199 + AO353_00765 0.61 -2.0 169,200 - AO353_00765 0.61 -2.6 169,255 + AO353_00765 0.64 -0.5 169,255 + AO353_00765 0.64 -1.1 169,255 + -0.5 169,255 + AO353_00765 0.64 -2.9 169,255 + AO353_00765 0.64 -2.1 169,255 + AO353_00765 0.64 -1.8 169,255 + AO353_00765 0.64 -2.4 169,255 + AO353_00765 0.64 +0.2 169,255 + AO353_00765 0.64 -1.0 169,256 - AO353_00765 0.65 -2.1 169,256 - AO353_00765 0.65 -1.1 169,256 - AO353_00765 0.65 -0.7 169,256 - AO353_00765 0.65 -1.1 169,260 + AO353_00765 0.65 +1.1 169,260 + AO353_00765 0.65 -3.6 169,261 - AO353_00765 0.65 -0.5 169,306 + AO353_00765 0.68 -1.8 169,307 - AO353_00765 0.68 -3.1 169,307 - AO353_00765 0.68 +0.8 169,352 + AO353_00765 0.71 +0.5 169,701 + -0.1 169,702 - -2.5 169,776 + +0.3 169,776 + +0.7 169,776 + +1.5 169,777 - -0.7 169,777 - +0.5 169,852 + +0.1 169,852 + -0.3 169,852 + +1.1 169,852 + -2.6 169,852 + -0.3 169,853 - +1.2 169,853 - +0.3 169,853 - -0.3 169,853 - +0.0 170,095 + -1.1 170,095 + +0.9 170,095 + +0.9 170,095 + +0.2 170,095 + -0.7 170,095 + -1.2 170,096 - -0.1 170,096 - -1.2 170,114 + +0.9 170,114 + +1.9 170,115 - +0.9 170,115 - +0.1 170,131 + -0.5 170,131 + -0.7 170,131 + +0.8 170,132 - +0.0 170,132 - +0.7 170,132 - -0.7 170,132 - +0.5 170,132 - +1.4 170,132 - +1.2 170,274 + AO353_00770 0.14 +0.8 170,274 + AO353_00770 0.14 +0.5 170,275 - AO353_00770 0.14 -0.5 170,275 - AO353_00770 0.14 +1.1 170,275 - AO353_00770 0.14 +1.9 170,382 + AO353_00770 0.18 +0.5 170,383 - AO353_00770 0.18 -0.5 170,464 + AO353_00770 0.22 +1.0 170,475 + AO353_00770 0.22 -1.3 170,475 + AO353_00770 0.22 -0.5 170,475 + AO353_00770 0.22 +0.9 170,475 + AO353_00770 0.22 +0.9 170,476 - AO353_00770 0.22 +1.2 170,659 + AO353_00770 0.30 -1.5 170,659 + AO353_00770 0.30 -0.9 170,660 - AO353_00770 0.30 +1.3 170,660 - AO353_00770 0.30 -0.1 170,681 + AO353_00770 0.31 +0.1 170,681 + AO353_00770 0.31 -1.5 170,701 - AO353_00770 0.32 -0.3 170,701 - AO353_00770 0.32 +1.5 170,701 - AO353_00770 0.32 +0.3 170,727 + AO353_00770 0.33 +0.8 170,727 + AO353_00770 0.33 -0.0 170,727 + AO353_00770 0.33 +0.9 170,727 + AO353_00770 0.33 +0.0 170,727 + AO353_00770 0.33 -0.7 170,727 + AO353_00770 0.33 -0.9 170,728 - AO353_00770 0.33 -0.8 170,728 - AO353_00770 0.33 +1.9 170,728 - AO353_00770 0.33 +1.3 170,728 - AO353_00770 0.33 +0.7 170,728 - AO353_00770 0.33 -2.3 170,728 - AO353_00770 0.33 -0.0 170,728 - AO353_00770 0.33 +0.4 170,728 - AO353_00770 0.33 -0.5 170,769 + AO353_00770 0.35 +0.1 170,769 + AO353_00770 0.35 +0.3 170,769 + AO353_00770 0.35 -0.5 170,769 + AO353_00770 0.35 +0.3 170,769 + AO353_00770 0.35 -1.1 170,770 - AO353_00770 0.35 +0.9
Or see this region's nucleotide sequence