Experiment: Ceftazidime 0.12 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_00715 and AO353_00720 are separated by 256 nucleotides AO353_00720 and AO353_00725 are separated by 2 nucleotides AO353_00725 and AO353_00730 are separated by 265 nucleotides
AO353_00715: AO353_00715 - cell division protein ZipA, at 153,338 to 154,186
_00715
AO353_00720: AO353_00720 - chromosome segregation protein SMC, at 154,443 to 157,931
_00720
AO353_00725: AO353_00725 - GntR family transcriptional regulator, at 157,934 to 158,593
_00725
AO353_00730: AO353_00730 - FAD-binding molybdopterin dehydrogenase, at 158,859 to 160,313
_00730
Position (kb) 154
155
156
157
158 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 154.222 kb on - strand at 154.250 kb on - strand at 154.314 kb on - strand at 154.314 kb on - strand at 154.334 kb on - strand at 154.340 kb on - strand at 154.340 kb on - strand at 154.340 kb on - strand at 154.370 kb on - strand at 154.370 kb on - strand at 154.422 kb on - strand at 154.422 kb on - strand at 154.422 kb on - strand at 154.431 kb on - strand at 154.569 kb on - strand at 154.569 kb on - strand at 154.571 kb on - strand at 154.571 kb on - strand at 154.571 kb on - strand at 154.571 kb on - strand at 154.571 kb on - strand at 154.571 kb on - strand at 154.571 kb on - strand at 154.571 kb on - strand at 154.571 kb on - strand at 154.571 kb on - strand at 154.743 kb on + strand at 154.743 kb on + strand at 154.744 kb on - strand at 154.806 kb on + strand, within AO353_00720 at 154.806 kb on + strand, within AO353_00720 at 154.807 kb on - strand, within AO353_00720 at 154.831 kb on + strand, within AO353_00720 at 154.831 kb on + strand, within AO353_00720 at 154.832 kb on - strand, within AO353_00720 at 154.832 kb on - strand, within AO353_00720 at 154.832 kb on - strand, within AO353_00720 at 154.832 kb on - strand, within AO353_00720 at 154.898 kb on + strand, within AO353_00720 at 154.898 kb on + strand, within AO353_00720 at 154.898 kb on + strand, within AO353_00720 at 154.899 kb on - strand, within AO353_00720 at 154.899 kb on - strand, within AO353_00720 at 155.023 kb on + strand, within AO353_00720 at 155.024 kb on - strand, within AO353_00720 at 155.423 kb on + strand, within AO353_00720 at 155.423 kb on + strand, within AO353_00720 at 155.424 kb on - strand, within AO353_00720 at 155.555 kb on + strand at 155.760 kb on + strand, within AO353_00720 at 155.760 kb on + strand, within AO353_00720 at 155.761 kb on - strand, within AO353_00720 at 155.761 kb on - strand, within AO353_00720 at 156.881 kb on + strand, within AO353_00720 at 156.882 kb on - strand, within AO353_00720 at 157.051 kb on + strand, within AO353_00720 at 157.051 kb on + strand, within AO353_00720 at 157.052 kb on - strand, within AO353_00720 at 157.052 kb on - strand, within AO353_00720 at 157.270 kb on + strand, within AO353_00720 at 157.270 kb on + strand, within AO353_00720 at 157.279 kb on + strand, within AO353_00720 at 157.279 kb on + strand, within AO353_00720 at 157.279 kb on + strand, within AO353_00720 at 157.279 kb on + strand, within AO353_00720 at 157.414 kb on + strand, within AO353_00720 at 157.414 kb on + strand, within AO353_00720 at 157.414 kb on + strand, within AO353_00720 at 157.414 kb on + strand, within AO353_00720 at 157.415 kb on - strand, within AO353_00720 at 157.415 kb on - strand, within AO353_00720 at 157.415 kb on - strand, within AO353_00720 at 157.510 kb on + strand, within AO353_00720 at 157.510 kb on + strand, within AO353_00720 at 157.585 kb on + strand at 157.585 kb on + strand at 157.585 kb on + strand at 157.586 kb on - strand at 157.588 kb on + strand at 157.588 kb on + strand at 157.588 kb on + strand at 157.588 kb on + strand at 157.588 kb on + strand at 157.588 kb on + strand at 157.588 kb on + strand at 157.588 kb on + strand at 157.589 kb on - strand at 157.589 kb on - strand at 157.589 kb on - strand at 157.589 kb on - strand at 157.589 kb on - strand at 157.589 kb on - strand at 157.589 kb on - strand at 157.589 kb on - strand at 157.589 kb on - strand at 157.589 kb on - strand at 157.589 kb on - strand at 157.589 kb on - strand at 157.589 kb on - strand at 157.589 kb on - strand at 157.649 kb on - strand at 157.649 kb on - strand at 157.724 kb on + strand at 157.725 kb on - strand at 157.859 kb on + strand at 157.859 kb on + strand at 157.983 kb on + strand at 157.983 kb on + strand at 157.984 kb on - strand at 157.984 kb on - strand at 158.103 kb on + strand, within AO353_00725 at 158.151 kb on + strand, within AO353_00725 at 158.151 kb on + strand, within AO353_00725 at 158.151 kb on + strand, within AO353_00725 at 158.152 kb on - strand, within AO353_00725 at 158.152 kb on - strand, within AO353_00725 at 158.152 kb on - strand, within AO353_00725 at 158.158 kb on + strand, within AO353_00725 at 158.232 kb on + strand, within AO353_00725 at 158.232 kb on + strand, within AO353_00725 at 158.232 kb on + strand, within AO353_00725 at 158.233 kb on - strand, within AO353_00725 at 158.325 kb on + strand at 158.325 kb on + strand, within AO353_00725 at 158.325 kb on + strand, within AO353_00725 at 158.325 kb on + strand at 158.325 kb on + strand, within AO353_00725 at 158.325 kb on + strand, within AO353_00725 at 158.325 kb on + strand, within AO353_00725 at 158.325 kb on + strand, within AO353_00725 at 158.325 kb on + strand, within AO353_00725 at 158.325 kb on + strand, within AO353_00725 at 158.325 kb on + strand, within AO353_00725 at 158.325 kb on + strand, within AO353_00725 at 158.325 kb on + strand, within AO353_00725 at 158.326 kb on - strand, within AO353_00725 at 158.326 kb on - strand, within AO353_00725 at 158.326 kb on - strand, within AO353_00725 at 158.326 kb on - strand, within AO353_00725 at 158.326 kb on - strand, within AO353_00725 at 158.621 kb on - strand at 158.637 kb on - strand at 158.707 kb on + strand at 158.707 kb on + strand at 158.708 kb on - strand at 158.708 kb on - strand at 158.708 kb on - strand at 158.732 kb on + strand at 158.732 kb on + strand at 158.732 kb on + strand at 158.732 kb on + strand at 158.732 kb on + strand at 158.732 kb on + strand at 158.732 kb on + strand at 158.732 kb on + strand at 158.732 kb on + strand at 158.733 kb on - strand at 158.733 kb on - strand at 158.733 kb on - strand at 158.733 kb on - strand at 158.733 kb on - strand at 158.733 kb on - strand at 158.733 kb on - strand at 158.758 kb on + strand at 158.758 kb on + strand at 158.772 kb on + strand at 158.772 kb on + strand at 158.772 kb on + strand at 158.773 kb on - strand at 158.773 kb on - strand at 158.810 kb on - strand at 158.837 kb on + strand at 158.838 kb on - strand at 158.872 kb on + strand at 158.872 kb on + strand at 158.876 kb on + strand at 158.877 kb on - strand at 158.877 kb on - strand at 158.931 kb on + strand at 158.931 kb on + strand at 158.931 kb on + strand at 158.931 kb on + strand at 158.931 kb on + strand at 158.931 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 0.12 mg/ml remove 154,222 - +0.2 154,250 - -0.3 154,314 - -2.9 154,314 - -2.2 154,334 - -0.2 154,340 - -0.2 154,340 - -0.1 154,340 - -0.9 154,370 - -1.5 154,370 - -1.3 154,422 - -0.1 154,422 - -0.2 154,422 - -0.1 154,431 - -0.3 154,569 - +0.8 154,569 - -2.5 154,571 - +0.9 154,571 - +0.8 154,571 - +0.4 154,571 - -0.1 154,571 - +0.5 154,571 - -0.3 154,571 - +0.2 154,571 - +0.5 154,571 - -1.5 154,571 - +0.5 154,743 + -2.0 154,743 + -1.3 154,744 - -0.1 154,806 + AO353_00720 0.10 -1.7 154,806 + AO353_00720 0.10 -0.2 154,807 - AO353_00720 0.10 +0.1 154,831 + AO353_00720 0.11 -1.5 154,831 + AO353_00720 0.11 -0.5 154,832 - AO353_00720 0.11 -0.5 154,832 - AO353_00720 0.11 -1.2 154,832 - AO353_00720 0.11 -1.8 154,832 - AO353_00720 0.11 +0.5 154,898 + AO353_00720 0.13 -1.1 154,898 + AO353_00720 0.13 -1.1 154,898 + AO353_00720 0.13 -1.5 154,899 - AO353_00720 0.13 -0.9 154,899 - AO353_00720 0.13 -0.2 155,023 + AO353_00720 0.17 -0.5 155,024 - AO353_00720 0.17 +0.5 155,423 + AO353_00720 0.28 +0.9 155,423 + AO353_00720 0.28 -0.5 155,424 - AO353_00720 0.28 -0.2 155,555 + -1.5 155,760 + AO353_00720 0.38 -1.2 155,760 + AO353_00720 0.38 -1.1 155,761 - AO353_00720 0.38 -0.6 155,761 - AO353_00720 0.38 -0.5 156,881 + AO353_00720 0.70 +0.3 156,882 - AO353_00720 0.70 +0.0 157,051 + AO353_00720 0.75 -0.6 157,051 + AO353_00720 0.75 +0.1 157,052 - AO353_00720 0.75 -2.4 157,052 - AO353_00720 0.75 -0.5 157,270 + AO353_00720 0.81 -1.8 157,270 + AO353_00720 0.81 -1.8 157,279 + AO353_00720 0.81 +0.8 157,279 + AO353_00720 0.81 +0.3 157,279 + AO353_00720 0.81 +3.3 157,279 + AO353_00720 0.81 -0.8 157,414 + AO353_00720 0.85 +0.5 157,414 + AO353_00720 0.85 +1.2 157,414 + AO353_00720 0.85 -0.1 157,414 + AO353_00720 0.85 -0.8 157,415 - AO353_00720 0.85 -0.7 157,415 - AO353_00720 0.85 +0.2 157,415 - AO353_00720 0.85 +0.5 157,510 + AO353_00720 0.88 -1.5 157,510 + AO353_00720 0.88 -0.6 157,585 + -1.5 157,585 + -1.1 157,585 + -3.4 157,586 - +0.3 157,588 + +0.5 157,588 + +0.9 157,588 + -0.3 157,588 + -0.1 157,588 + -1.7 157,588 + -0.3 157,588 + -1.3 157,588 + -1.1 157,589 - +0.5 157,589 - -0.5 157,589 - -0.1 157,589 - +0.1 157,589 - -0.2 157,589 - -0.3 157,589 - -0.5 157,589 - +0.9 157,589 - -0.8 157,589 - -0.5 157,589 - -1.2 157,589 - +0.3 157,589 - +0.5 157,589 - +1.0 157,649 - -1.5 157,649 - -0.1 157,724 + -1.8 157,725 - -0.7 157,859 + -1.3 157,859 + +0.8 157,983 + -0.3 157,983 + -0.6 157,984 - +0.9 157,984 - -1.2 158,103 + AO353_00725 0.26 -1.1 158,151 + AO353_00725 0.33 -1.2 158,151 + AO353_00725 0.33 -1.6 158,151 + AO353_00725 0.33 -0.2 158,152 - AO353_00725 0.33 +0.2 158,152 - AO353_00725 0.33 -1.5 158,152 - AO353_00725 0.33 +0.2 158,158 + AO353_00725 0.34 +0.5 158,232 + AO353_00725 0.45 +0.1 158,232 + AO353_00725 0.45 -0.8 158,232 + AO353_00725 0.45 -0.1 158,233 - AO353_00725 0.45 -0.2 158,325 + -0.5 158,325 + AO353_00725 0.59 +0.1 158,325 + AO353_00725 0.59 +0.9 158,325 + +1.5 158,325 + AO353_00725 0.59 +0.3 158,325 + AO353_00725 0.59 -0.2 158,325 + AO353_00725 0.59 -0.3 158,325 + AO353_00725 0.59 -2.5 158,325 + AO353_00725 0.59 -1.1 158,325 + AO353_00725 0.59 -0.3 158,325 + AO353_00725 0.59 +0.9 158,325 + AO353_00725 0.59 -0.7 158,325 + AO353_00725 0.59 -2.1 158,326 - AO353_00725 0.59 +0.3 158,326 - AO353_00725 0.59 +0.0 158,326 - AO353_00725 0.59 +0.9 158,326 - AO353_00725 0.59 +0.7 158,326 - AO353_00725 0.59 +0.2 158,621 - +0.2 158,637 - -0.2 158,707 + -0.1 158,707 + +1.9 158,708 - -0.8 158,708 - +2.5 158,708 - +0.0 158,732 + -1.3 158,732 + -0.2 158,732 + -2.5 158,732 + -1.2 158,732 + -0.2 158,732 + +0.5 158,732 + +2.1 158,732 + +0.2 158,732 + +0.5 158,733 - +0.1 158,733 - -1.1 158,733 - -1.1 158,733 - +0.2 158,733 - +0.9 158,733 - +1.8 158,733 - +0.3 158,758 + +0.1 158,758 + -0.2 158,772 + -1.9 158,772 + +0.9 158,772 + +0.5 158,773 - -2.6 158,773 - -1.5 158,810 - -0.2 158,837 + -0.5 158,838 - -0.1 158,872 + +0.5 158,872 + +0.3 158,876 + +1.1 158,877 - -0.3 158,877 - +0.3 158,931 + -1.5 158,931 + -1.5 158,931 + -0.5 158,931 + +1.0 158,931 + +0.8 158,931 + -1.9
Or see this region's nucleotide sequence