Experiment: Ceftazidime 0.12 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_00605 and AO353_00610 overlap by 1 nucleotides AO353_00610 and AO353_00615 are separated by 5 nucleotides AO353_00615 and AO353_00620 overlap by 4 nucleotides
AO353_00605: AO353_00605 - cytochrome C oxidase Cbb3, at 128,140 to 129,582
_00605
AO353_00610: AO353_00610 - cytochrome C oxidase Cbb3, at 129,582 to 130,190
_00610
AO353_00615: AO353_00615 - cytochrome oxidase, at 130,196 to 130,381
_00615
AO353_00620: AO353_00620 - cytochrome C oxidase Cbb3, at 130,378 to 131,355
_00620
Position (kb) 129
130
131 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 128.614 kb on + strand, within AO353_00605 at 128.614 kb on + strand, within AO353_00605 at 128.615 kb on - strand, within AO353_00605 at 128.615 kb on - strand, within AO353_00605 at 128.632 kb on + strand, within AO353_00605 at 128.710 kb on + strand, within AO353_00605 at 128.711 kb on - strand, within AO353_00605 at 128.711 kb on - strand, within AO353_00605 at 128.810 kb on - strand, within AO353_00605 at 128.812 kb on + strand, within AO353_00605 at 128.812 kb on + strand, within AO353_00605 at 128.813 kb on - strand, within AO353_00605 at 128.846 kb on - strand, within AO353_00605 at 128.846 kb on - strand, within AO353_00605 at 128.923 kb on + strand, within AO353_00605 at 129.039 kb on + strand, within AO353_00605 at 129.039 kb on + strand, within AO353_00605 at 129.039 kb on + strand, within AO353_00605 at 129.040 kb on - strand, within AO353_00605 at 129.179 kb on + strand, within AO353_00605 at 129.179 kb on + strand, within AO353_00605 at 129.179 kb on + strand, within AO353_00605 at 129.180 kb on - strand, within AO353_00605 at 129.229 kb on + strand, within AO353_00605 at 129.326 kb on - strand at 129.403 kb on + strand, within AO353_00605 at 129.404 kb on - strand, within AO353_00605 at 129.404 kb on - strand, within AO353_00605 at 129.499 kb on + strand at 129.499 kb on + strand at 129.500 kb on - strand at 129.608 kb on + strand at 129.609 kb on - strand at 129.891 kb on - strand, within AO353_00610 at 129.954 kb on + strand, within AO353_00610 at 130.077 kb on + strand, within AO353_00610 at 130.078 kb on - strand, within AO353_00610 at 130.193 kb on + strand at 130.194 kb on - strand at 130.363 kb on + strand at 130.363 kb on + strand at 130.363 kb on + strand at 130.363 kb on + strand at 130.364 kb on - strand at 130.364 kb on - strand at 130.364 kb on - strand at 130.383 kb on + strand at 130.383 kb on + strand at 130.400 kb on - strand at 130.400 kb on - strand at 130.525 kb on + strand at 131.143 kb on - strand, within AO353_00620 at 131.170 kb on - strand, within AO353_00620
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 0.12 mg/ml remove 128,614 + AO353_00605 0.33 +1.2 128,614 + AO353_00605 0.33 +2.1 128,615 - AO353_00605 0.33 +0.1 128,615 - AO353_00605 0.33 -1.2 128,632 + AO353_00605 0.34 +1.0 128,710 + AO353_00605 0.40 -1.5 128,711 - AO353_00605 0.40 +0.5 128,711 - AO353_00605 0.40 -1.1 128,810 - AO353_00605 0.46 -0.1 128,812 + AO353_00605 0.47 -0.1 128,812 + AO353_00605 0.47 +0.7 128,813 - AO353_00605 0.47 +1.1 128,846 - AO353_00605 0.49 +0.5 128,846 - AO353_00605 0.49 -0.3 128,923 + AO353_00605 0.54 -0.5 129,039 + AO353_00605 0.62 -0.1 129,039 + AO353_00605 0.62 -0.1 129,039 + AO353_00605 0.62 -1.0 129,040 - AO353_00605 0.62 -1.1 129,179 + AO353_00605 0.72 +1.5 129,179 + AO353_00605 0.72 -0.1 129,179 + AO353_00605 0.72 -0.7 129,180 - AO353_00605 0.72 -1.5 129,229 + AO353_00605 0.75 -0.3 129,326 - +0.5 129,403 + AO353_00605 0.88 +0.9 129,404 - AO353_00605 0.88 -2.8 129,404 - AO353_00605 0.88 +0.5 129,499 + +1.0 129,499 + -2.6 129,500 - +1.5 129,608 + +0.7 129,609 - -0.3 129,891 - AO353_00610 0.51 -0.5 129,954 + AO353_00610 0.61 -0.5 130,077 + AO353_00610 0.81 -1.3 130,078 - AO353_00610 0.81 +0.5 130,193 + -1.1 130,194 - -1.1 130,363 + +1.5 130,363 + +0.3 130,363 + -1.4 130,363 + +1.1 130,364 - -0.8 130,364 - -1.5 130,364 - -1.5 130,383 + +2.1 130,383 + +0.5 130,400 - -0.1 130,400 - +0.5 130,525 + -0.1 131,143 - AO353_00620 0.78 +0.9 131,170 - AO353_00620 0.81 -0.1
Or see this region's nucleotide sequence