Experiment: Ceftazidime 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ppiB and thiL are separated by 13 nucleotides thiL and Synpcc7942_2568 are separated by 11 nucleotides Synpcc7942_2568 and pyrF overlap by 4 nucleotides
Synpcc7942_2566: ppiB - peptidyl-prolyl cis-trans isomerase, at 2,645,522 to 2,646,619
ppiB
Synpcc7942_2567: thiL - thiamine monophosphate kinase, at 2,646,633 to 2,647,616
thiL
Synpcc7942_2568: Synpcc7942_2568 - hypothetical protein, at 2,647,628 to 2,648,101
_2568
Synpcc7942_2569: pyrF - orotidine 5'-phosphate decarboxylase, at 2,648,098 to 2,648,820
pyrF
Position (kb)
2646
2647
2648 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 2645.671 kb on + strand at 2645.751 kb on - strand, within ppiB at 2645.779 kb on + strand at 2645.878 kb on + strand, within ppiB at 2645.923 kb on + strand, within ppiB at 2646.124 kb on - strand at 2646.136 kb on - strand, within ppiB at 2646.184 kb on - strand, within ppiB at 2646.264 kb on - strand, within ppiB at 2646.423 kb on - strand, within ppiB at 2646.459 kb on - strand, within ppiB at 2646.526 kb on + strand at 2646.534 kb on - strand at 2646.574 kb on + strand at 2646.581 kb on - strand at 2646.615 kb on + strand at 2646.622 kb on - strand at 2646.622 kb on - strand at 2647.618 kb on - strand at 2647.626 kb on + strand at 2647.626 kb on + strand at 2647.672 kb on + strand at 2647.712 kb on - strand, within Synpcc7942_2568 at 2647.725 kb on + strand, within Synpcc7942_2568 at 2647.759 kb on + strand, within Synpcc7942_2568 at 2647.795 kb on + strand, within Synpcc7942_2568 at 2647.807 kb on + strand, within Synpcc7942_2568 at 2647.807 kb on + strand, within Synpcc7942_2568 at 2647.861 kb on + strand, within Synpcc7942_2568 at 2647.931 kb on - strand, within Synpcc7942_2568 at 2647.957 kb on + strand, within Synpcc7942_2568 at 2647.958 kb on + strand, within Synpcc7942_2568 at 2647.980 kb on - strand, within Synpcc7942_2568 at 2648.038 kb on - strand, within Synpcc7942_2568 at 2648.043 kb on + strand, within Synpcc7942_2568 at 2648.051 kb on - strand, within Synpcc7942_2568 at 2648.075 kb on + strand at 2648.097 kb on + strand at 2648.107 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 0.125 mg/ml remove 2,645,671 + -0.0 2,645,751 - ppiB Synpcc7942_2566 0.21 +0.6 2,645,779 + +3.6 2,645,878 + ppiB Synpcc7942_2566 0.32 -0.0 2,645,923 + ppiB Synpcc7942_2566 0.37 +3.3 2,646,124 - -0.0 2,646,136 - ppiB Synpcc7942_2566 0.56 -0.0 2,646,184 - ppiB Synpcc7942_2566 0.60 +3.0 2,646,264 - ppiB Synpcc7942_2566 0.68 +0.6 2,646,423 - ppiB Synpcc7942_2566 0.82 -0.0 2,646,459 - ppiB Synpcc7942_2566 0.85 +3.6 2,646,526 + -1.4 2,646,534 - +1.0 2,646,574 + -1.0 2,646,581 - -1.0 2,646,615 + +2.0 2,646,622 - -0.1 2,646,622 - -0.0 2,647,618 - -0.1 2,647,626 + -0.6 2,647,626 + -0.7 2,647,672 + +2.5 2,647,712 - Synpcc7942_2568 0.18 +2.9 2,647,725 + Synpcc7942_2568 0.20 +2.3 2,647,759 + Synpcc7942_2568 0.28 +2.6 2,647,795 + Synpcc7942_2568 0.35 +2.7 2,647,807 + Synpcc7942_2568 0.38 +2.6 2,647,807 + Synpcc7942_2568 0.38 +1.4 2,647,861 + Synpcc7942_2568 0.49 +4.2 2,647,931 - Synpcc7942_2568 0.64 +0.6 2,647,957 + Synpcc7942_2568 0.69 +2.7 2,647,958 + Synpcc7942_2568 0.70 +0.7 2,647,980 - Synpcc7942_2568 0.74 +3.9 2,648,038 - Synpcc7942_2568 0.86 +1.6 2,648,043 + Synpcc7942_2568 0.88 -0.5 2,648,051 - Synpcc7942_2568 0.89 +0.3 2,648,075 + +2.5 2,648,097 + -0.0 2,648,107 - -0.0
Or see this region's nucleotide sequence