Experiment: Ceftazidime 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt leuC and Synpcc7942_1899 are separated by 61 nucleotides Synpcc7942_1899 and dcd are separated by 53 nucleotides dcd and Synpcc7942_1901 are separated by 44 nucleotides
Synpcc7942_1898: leuC - isopropylmalate isomerase large subunit, at 1,970,822 to 1,972,228
leuC
Synpcc7942_1899: Synpcc7942_1899 - hypothetical protein, at 1,972,290 to 1,972,778
_1899
Synpcc7942_1900: dcd - deoxycytidine triphosphate deaminase, at 1,972,832 to 1,973,413
dcd
Synpcc7942_1901: Synpcc7942_1901 - putative glycosyltransferase, at 1,973,458 to 1,975,839
_1901
Position (kb) 1972
1973
1974 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7 at 1972.223 kb on + strand at 1972.259 kb on + strand at 1972.259 kb on + strand at 1972.265 kb on - strand at 1972.267 kb on - strand at 1972.340 kb on - strand, within Synpcc7942_1899 at 1972.342 kb on - strand, within Synpcc7942_1899 at 1972.392 kb on + strand, within Synpcc7942_1899 at 1972.398 kb on + strand, within Synpcc7942_1899 at 1972.400 kb on + strand, within Synpcc7942_1899 at 1972.400 kb on + strand at 1972.481 kb on - strand, within Synpcc7942_1899 at 1972.488 kb on + strand, within Synpcc7942_1899 at 1972.490 kb on + strand, within Synpcc7942_1899 at 1972.490 kb on + strand, within Synpcc7942_1899 at 1972.495 kb on + strand, within Synpcc7942_1899 at 1972.498 kb on - strand, within Synpcc7942_1899 at 1972.521 kb on - strand, within Synpcc7942_1899 at 1972.521 kb on - strand, within Synpcc7942_1899 at 1972.523 kb on + strand, within Synpcc7942_1899 at 1972.523 kb on + strand, within Synpcc7942_1899 at 1972.523 kb on + strand, within Synpcc7942_1899 at 1972.531 kb on - strand, within Synpcc7942_1899 at 1972.531 kb on - strand, within Synpcc7942_1899 at 1972.531 kb on - strand, within Synpcc7942_1899 at 1972.531 kb on - strand, within Synpcc7942_1899 at 1972.536 kb on - strand, within Synpcc7942_1899 at 1972.546 kb on + strand, within Synpcc7942_1899 at 1972.546 kb on + strand, within Synpcc7942_1899 at 1972.551 kb on + strand, within Synpcc7942_1899 at 1972.554 kb on - strand, within Synpcc7942_1899 at 1972.566 kb on - strand, within Synpcc7942_1899 at 1972.642 kb on - strand, within Synpcc7942_1899 at 1972.661 kb on - strand, within Synpcc7942_1899 at 1972.676 kb on + strand, within Synpcc7942_1899 at 1972.677 kb on - strand, within Synpcc7942_1899 at 1972.742 kb on - strand at 1972.747 kb on + strand at 1972.762 kb on + strand at 1972.762 kb on - strand at 1972.762 kb on - strand at 1972.770 kb on - strand at 1972.809 kb on - strand at 1973.397 kb on + strand at 1973.407 kb on + strand at 1973.407 kb on + strand at 1973.415 kb on - strand at 1973.415 kb on - strand at 1973.415 kb on - strand at 1973.494 kb on - strand at 1973.867 kb on - strand, within Synpcc7942_1901 at 1974.301 kb on - strand, within Synpcc7942_1901
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 0.125 mg/ml remove 1,972,223 + -1.0 1,972,259 + +1.0 1,972,259 + -0.8 1,972,265 - +3.9 1,972,267 - +0.0 1,972,340 - Synpcc7942_1899 0.10 -1.7 1,972,342 - Synpcc7942_1899 0.11 -0.8 1,972,392 + Synpcc7942_1899 0.21 +2.0 1,972,398 + Synpcc7942_1899 0.22 -0.6 1,972,400 + Synpcc7942_1899 0.22 -0.3 1,972,400 + +0.0 1,972,481 - Synpcc7942_1899 0.39 +0.4 1,972,488 + Synpcc7942_1899 0.40 +1.0 1,972,490 + Synpcc7942_1899 0.41 +1.6 1,972,490 + Synpcc7942_1899 0.41 -0.1 1,972,495 + Synpcc7942_1899 0.42 -0.1 1,972,498 - Synpcc7942_1899 0.43 -2.2 1,972,521 - Synpcc7942_1899 0.47 +0.6 1,972,521 - Synpcc7942_1899 0.47 -0.6 1,972,523 + Synpcc7942_1899 0.48 -1.2 1,972,523 + Synpcc7942_1899 0.48 +3.3 1,972,523 + Synpcc7942_1899 0.48 +1.9 1,972,531 - Synpcc7942_1899 0.49 -0.6 1,972,531 - Synpcc7942_1899 0.49 +0.0 1,972,531 - Synpcc7942_1899 0.49 +1.0 1,972,531 - Synpcc7942_1899 0.49 -0.4 1,972,536 - Synpcc7942_1899 0.50 +0.7 1,972,546 + Synpcc7942_1899 0.52 +0.0 1,972,546 + Synpcc7942_1899 0.52 +0.5 1,972,551 + Synpcc7942_1899 0.53 -1.0 1,972,554 - Synpcc7942_1899 0.54 -1.2 1,972,566 - Synpcc7942_1899 0.56 -0.6 1,972,642 - Synpcc7942_1899 0.72 -1.3 1,972,661 - Synpcc7942_1899 0.76 +1.0 1,972,676 + Synpcc7942_1899 0.79 -0.4 1,972,677 - Synpcc7942_1899 0.79 +1.0 1,972,742 - -0.6 1,972,747 + +2.2 1,972,762 + +3.6 1,972,762 - +1.6 1,972,762 - -2.1 1,972,770 - -0.8 1,972,809 - -0.6 1,973,397 + +3.6 1,973,407 + +0.0 1,973,407 + +1.4 1,973,415 - -0.7 1,973,415 - +0.4 1,973,415 - -1.0 1,973,494 - +6.9 1,973,867 - Synpcc7942_1901 0.17 +6.5 1,974,301 - Synpcc7942_1901 0.35 +2.5
Or see this region's nucleotide sequence